Rh3DG293400

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000768
Physical Location & Seq
Reverse (-)
30409908 .. 30416204
6297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG293400.1

Sequence Viewer

Length: 1713 bp
ATGTCTATCCAGTGCTTAGCGAGCAGCGGTAGCCCTACTGCTCAAACTTCACATCTGGATGTTAAAAGACTGACAGCAAATTACAAGCCAAGTATTTGGAGTCATGATTTTTTTCAGTCGTTACAGATTGATGATCGTAATCATGAAGAAGTATACAAAGATAATAGGTGGAAGTTGATTGAGGAGGATCTGAAAAATGTGATTGATGCAGAGTCACTACAGACTACACTTGAATTGATTGATGACATCCAACTATTAGGTTTGGGACACCGATTCGAGGCCAGTATAACAGAAGCCCTTGATAAAGTTTTGAAGAAACTTGACCAAATAACAGATGAGGATACTCCAAGTCTGCACCTCACTGCTCTCAGCTTCAGACTCCTTAGACAACATGGGTTTCAAGTCTCCCAAGATGTTTTCAAAATTTTCATGGACTGCGACGACAACTTCAAGGATTGCCTTTGCGAAGATGTCAAAGGAATGTTGAGTCTATACGAAGCTTCATTCCTTGGTATTGAAGGAGAAACACTCTTGGAAGAGGCTCTTGCATTCACCAGCATGCACCTAAAGAACCTCAGCAAATTGCATGTTACTCAAGGCATAGGTGTATTAGAGCAAGTGAGTCATGCATTGGAGATGCCATTGCACCATAGAATGCAAAGACTAGAAGCTAGATGGTATATTGAGGCATATAGTAAAAAGGCAGATGCAAATCAGGTGCTACTTGAATTTGCCAAGCTAGATTACAATGTGGTGCAACAAACGTACCAAAGAGATCTTAAAGACATTTCAAGGTGGTGGAAGGACACAGGGTTAGCAAAGAAGTTATCCTTCAGCAGAGACAGACTGATGGAGTTGTTCTTTTGGTCAGTTGGTATAGTGTTTGAACCTCAATTCAGCAATGTTAGAAAAGGGATAACTAAAGTCAGTGCTCTAATAACGACAATTGATGATGTTTATGATGTTTATGGTGCTTTGGATGAACTAGAGCTATTCACATCTGTTGTTGAAAGATGGGATGTGAATGCTGTGGAGATTCTTTCAGACTACCAGCTGAAGCTCTGTTTCCTTGCTCTCTATAACACTGTGAATGAAATGACTTATGAAACTTTGAAGGAACAAGGAGTGAATGTCCTTCCTTACATGAGAAAAGCTTGGGCAGATATGTGCAAAACTTGGTTGACGGAGGCAAAGTGGCGTCACAACAAGTACACACCTACATTTGAAGAATATCTTGCCAATGCATGGATATCAGTGTCCGGGGTGGTCATTCTAGTTCATACCTACTTTCTACTGAATCAAAATATCTTAGATGAAGCACTTAAATGCTTAGAGAATCACCATGATCTCTTGCGTTGGCCGTCTCTTATTTTTCGGCTCTCAAATGATTTGGTTACTTCGAAGGCAGAACTAGAGAGAGGTGAAACTGCAACTTCAATATCCTGCATCAAACGTGATGGTGTTGTTTCTGATGAGGAATCTGCTCTCAAATATATTAGTAATTTGATTGAGAATAGTTGGAAGAAGATGAACAAAGATGGACTACTATTTGGTGCTAATAGAGCTTCTTCTCCATTCACAAAGGAATTTGTAGCAGCAACAATGAACCTTGCTCGAATTGCCCAATGCATTTACCAATATGGAGACGGGATTGGTGCCCCGGACAAAAGAGTAAAGAACCAGATCCTAGCAGTGATTGTACAACCCGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

570

Amino Acids

65.49

Weight (kDa)

5.33

Isoelectric Point (pI)

34.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 32 - 211 4e-48 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 268 - 509 1.1e-85 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 308 - 509 8.2e-56 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1655
AccB7I CCANNNNNTGG 1 cut(s) 1245
AccI GTMKAC 1 cut(s) 153
AciI CCGC 1 cut(s) 27
AclWI GGATC 2 cut(s) 195, 1678
AcoI YGGCCR 1 cut(s) 1358
AcsI RAATTY 3 cut(s) 423, 728, 1586
AcuI CTGAAG 3 cut(s) 358, 817, 1076
AcyI GRCGYC 1 cut(s) 1198
AfaI GTAC 3 cut(s) 767, 1211, 1701
AfiI CCNNNNNNNGG 2 cut(s) 277, 1245
AluBI AGCT 9 cut(s) 372, 500, 671, 739, 991, 1054, 1060, 1154, 1565
AluI AGCT 9 cut(s) 372, 500, 671, 739, 991, 1054, 1060, 1154, 1565
Alw21I GWGCWC 1 cut(s) 934
Alw26I GTCTC 4 cut(s) 409, 834, 1368, 1638
AlwI GGATC 2 cut(s) 195, 1678
AoxI GGCC 2 cut(s) 279, 1358
ApeKI GCWGC 2 cut(s) 24, 1595
ApoI RAATTY 3 cut(s) 423, 728, 1586
AsuC2I CCSGG 2 cut(s) 1261, 1661
AsuHPI GGTGA 3 cut(s) 544, 1331, 1433
AsuII TTCGAA 1 cut(s) 1400
BaeGI GKGCMC 1 cut(s) 1660
BaeI ACNNNNGTAYC 2 cut(s) 749, 782
BanI GGYRCC 1 cut(s) 1655
Bbv12I GWGCWC 1 cut(s) 934
BbvCI CCTCAGC 1 cut(s) 575
BbvI GCAGC 2 cut(s) 36, 1607
BccI CCATC 5 cut(s) 669, 844, 1008, 1451, 1532
BceAI ACGGC 1 cut(s) 1345
BciVI GTATCC 1 cut(s) 334
BcnI CCSGG 2 cut(s) 1261, 1661
BcoDI GTCTC 4 cut(s) 409, 834, 1368, 1638
BfaI CTAG 7 cut(s) 665, 672, 740, 986, 1274, 1412, 1688
BfmI CTRYAG 1 cut(s) 218
BfuI GTATCC 1 cut(s) 334
BglII AGATCT 1 cut(s) 775
BisI GCNGC 2 cut(s) 25, 1596
BlpI GCTNAGC 1 cut(s) 16
BlsI GCNGC 2 cut(s) 26, 1597
Bme1390I CCNGG 2 cut(s) 1261, 1661
BmiI GGNNCC 1 cut(s) 1657
BmrFI CCNGG 2 cut(s) 1261, 1661
BmsI GCATC 4 cut(s) 196, 627, 697, 1455
BplI GAGNNNNNCTC 2 cut(s) 513, 545
Bpu10I CCTNAGC 1 cut(s) 575
Bpu1102I GCTNAGC 1 cut(s) 16
Bpu14I TTCGAA 1 cut(s) 1400
BpuEI CTTGAG 1 cut(s) 579
BpuMI CCSGG 2 cut(s) 1261, 1661
BsaBI GATNNNNATC 2 cut(s) 138, 711
BsaHI GRCGYC 1 cut(s) 1198
BsaJI CCNNGG 3 cut(s) 508, 1260, 1659
BsaXI ACNNNNNCTCC 4 cut(s) 1116, 1146, 1178, 1208
Bsc4I CCNNNNNNNGG 2 cut(s) 277, 1245
Bse1I ACTGG 2 cut(s) 10, 282
Bse3DI GCAATG 2 cut(s) 641, 907
Bse8I GATNNNNATC 2 cut(s) 138, 711
BseDI CCNNGG 3 cut(s) 508, 1260, 1659
BseGI GGATG 4 cut(s) 64, 246, 985, 1024
BseJI GATNNNNATC 2 cut(s) 138, 711
BseLI CCNNNNNNNGG 2 cut(s) 277, 1245
BseMI GCAATG 2 cut(s) 641, 907
BseMII CTCAG 2 cut(s) 382, 589
BseNI ACTGG 2 cut(s) 10, 282
BseRI GAGGAG 1 cut(s) 197
BseSI GKGCMC 1 cut(s) 1660
BseXI GCAGC 2 cut(s) 36, 1607
BsgI GTGCAG 1 cut(s) 338
BshFI GGCC 2 cut(s) 281, 1360
BshNI GGYRCC 1 cut(s) 1655
BsiHKAI GWGCWC 1 cut(s) 934
BsiSI CCGG 2 cut(s) 1260, 1661
BslFI GGGAC 1 cut(s) 279
BslI CCNNNNNNNGG 2 cut(s) 277, 1245
BsmAI GTCTC 4 cut(s) 409, 834, 1368, 1638
BsmBI CGTCTC 2 cut(s) 1368, 1638
BsmFI GGGAC 1 cut(s) 279
BsmI GAATGC 3 cut(s) 548, 660, 1030
BsnI GGCC 2 cut(s) 281, 1360
Bsp119I TTCGAA 1 cut(s) 1400
Bsp1286I GDGCHC 2 cut(s) 934, 1660
Bsp1407I TGTACA 1 cut(s) 1699
Bsp143I GATC 5 cut(s) 133, 187, 775, 1345, 1683
Bsp1720I GCTNAGC 1 cut(s) 16
BspACI CCGC 1 cut(s) 27
BspANI GGCC 2 cut(s) 281, 1360
BspCNI CTCAG 2 cut(s) 381, 588
BspHI TCATGA 2 cut(s) 103, 142
BspLI GGNNCC 1 cut(s) 1657
BspPI GGATC 2 cut(s) 195, 1678
BspT104I TTCGAA 1 cut(s) 1400
BspT107I GGYRCC 1 cut(s) 1655
BsrDI GCAATG 2 cut(s) 641, 907
BsrGI TGTACA 1 cut(s) 1699
BsrI ACTGG 2 cut(s) 10, 282
BssECI CCNNGG 3 cut(s) 508, 1260, 1659
BssMI GATC 5 cut(s) 133, 187, 775, 1345, 1683
BssNAI GTATAC 1 cut(s) 154
BssNI GRCGYC 1 cut(s) 1198
BssT1I CCWWGG 1 cut(s) 508
Bst1107I GTATAC 1 cut(s) 154
Bst4CI ACNGT 1 cut(s) 1087
Bst6I CTCTTC 1 cut(s) 531
BstACI GRCGYC 1 cut(s) 1198
BstAUI TGTACA 1 cut(s) 1699
BstBI TTCGAA 1 cut(s) 1400
BstC8I GCNNGC 2 cut(s) 22, 560
BstDEI CTNAG 6 cut(s) 16, 368, 383, 575, 1309, 1330
BstF5I GGATG 4 cut(s) 64, 246, 985, 1024
BstKTI GATC 5 cut(s) 136, 190, 778, 1348, 1686
BstMAI GTCTC 4 cut(s) 409, 834, 1368, 1638
BstMBI GATC 5 cut(s) 133, 187, 775, 1345, 1683
BstMWI GCNNNNNNNGC 4 cut(s) 21, 30, 1562, 1619
BstNSI RCATGY 2 cut(s) 562, 590
BstSCI CCNGG 2 cut(s) 1259, 1659
BstSFI CTRYAG 1 cut(s) 218
BstSLI GKGCMC 1 cut(s) 1660
BstV1I GCAGC 2 cut(s) 36, 1607
BstX2I RGATCY 3 cut(s) 187, 775, 1683
BstXI CCANNNNNNTGG 1 cut(s) 96
BstYI RGATCY 3 cut(s) 187, 775, 1683
BstZ17I GTATAC 1 cut(s) 154
BsuI GTATCC 1 cut(s) 334
BsuRI GGCC 2 cut(s) 281, 1360
BtsCI GGATG 4 cut(s) 64, 246, 985, 1024
BtsI GCAGTG 2 cut(s) 360, 1698
BtsIMutI CAGTG 6 cut(s) 17, 360, 934, 1083, 1260, 1698
Cac8I GCNNGC 2 cut(s) 22, 560
CciI TCATGA 2 cut(s) 103, 142
CseI GACGC 1 cut(s) 1187
Csp6I GTAC 3 cut(s) 766, 1210, 1700
CviQI GTAC 3 cut(s) 766, 1210, 1700
DdeI CTNAG 6 cut(s) 16, 368, 383, 575, 1309, 1330
DpnI GATC 5 cut(s) 135, 189, 777, 1347, 1685
DpnII GATC 5 cut(s) 133, 187, 775, 1345, 1683
EaeI YGGCCR 1 cut(s) 1358
Eam1104I CTCTTC 1 cut(s) 531
EarI CTCTTC 1 cut(s) 531
Eco130I CCWWGG 1 cut(s) 508
Eco32I GATATC 1 cut(s) 1251
Eco57I CTGAAG 3 cut(s) 358, 817, 1076
EcoRV GATATC 1 cut(s) 1251
EcoT14I CCWWGG 1 cut(s) 508
EcoT22I ATGCAT 3 cut(s) 631, 1246, 1631
ErhI CCWWGG 1 cut(s) 508
Esp3I CGTCTC 2 cut(s) 1368, 1638
FalI AAGNNNNNCTT 6 cut(s) 528, 560, 815, 847, 1218, 1250
FaqI GGGAC 1 cut(s) 279
FblI GTMKAC 1 cut(s) 153
Fnu4HI GCNGC 2 cut(s) 25, 1596
FokI GGATG 4 cut(s) 71, 233, 992, 1031
Fsp4HI GCNGC 2 cut(s) 25, 1596
FspBI CTAG 7 cut(s) 665, 672, 740, 986, 1274, 1412, 1688
GluI GCNGC 2 cut(s) 25, 1596
HaeIII GGCC 2 cut(s) 281, 1360
HapII CCGG 2 cut(s) 1260, 1661
HgaI GACGC 1 cut(s) 1187
Hin1I GRCGYC 1 cut(s) 1198
HincII GTYRAC 1 cut(s) 1182
HindII GTYRAC 1 cut(s) 1182
HindIII AAGCTT 2 cut(s) 498, 1152
HpaII CCGG 2 cut(s) 1260, 1661
HphI GGTGA 3 cut(s) 544, 1331, 1433
Hpy166II GTNNAC 3 cut(s) 154, 1182, 1212
Hpy188I TCNGA 4 cut(s) 192, 377, 1045, 1471
Hpy188III TCNNGA 3 cut(s) 56, 104, 143
Hpy8I GTNNAC 3 cut(s) 154, 1182, 1212
Hpy99I CGWCG 1 cut(s) 443
HpyAV CCTTC 6 cut(s) 512, 796, 841, 1108, 1145, 1396
HpyCH4III ACNGT 1 cut(s) 1087
HpyCH4IV ACGT 2 cut(s) 764, 1453
HpyF10VI GCNNNNNNNGC 4 cut(s) 21, 30, 1562, 1619
HpyF3I CTNAG 6 cut(s) 16, 368, 383, 575, 1309, 1330
HpySE526I ACGT 2 cut(s) 764, 1453
Hsp92I GRCGYC 1 cut(s) 1198
Kzo9I GATC 5 cut(s) 133, 187, 775, 1345, 1683
Lsp1109I GCAGC 2 cut(s) 36, 1607
LweI GCATC 4 cut(s) 196, 627, 697, 1455
MaeI CTAG 7 cut(s) 665, 672, 740, 986, 1274, 1412, 1688
MaeII ACGT 2 cut(s) 764, 1453
MaeIII GTNAC 5 cut(s) 120, 213, 589, 1199, 1393
MalI GATC 5 cut(s) 135, 189, 777, 1347, 1685
MboI GATC 5 cut(s) 133, 187, 775, 1345, 1683
MboII GAAGA 8 cut(s) 158, 325, 479, 548, 1238, 1534, 1537, 1560
MfeI CAATTG 1 cut(s) 945
MflI RGATCY 3 cut(s) 187, 775, 1683
MhlI GDGCHC 2 cut(s) 934, 1660
MlyI GAGTC 5 cut(s) 109, 221, 372, 496, 631
MmeI TCCRAC 2 cut(s) 274, 1499
Mph1103I ATGCAT 3 cut(s) 631, 1246, 1631
MseI TTAA 3 cut(s) 63, 780, 1323
MslI CAYNNNNRTG 3 cut(s) 57, 557, 1324
MspA1I CMGCKG 2 cut(s) 27, 1054
MspI CCGG 2 cut(s) 1260, 1661
MspR9I CCNGG 2 cut(s) 1261, 1661
MunI CAATTG 1 cut(s) 945
Mva1269I GAATGC 3 cut(s) 548, 660, 1030
MwoI GCNNNNNNNGC 4 cut(s) 21, 30, 1562, 1619
NciI CCSGG 2 cut(s) 1261, 1661
NdeII GATC 5 cut(s) 133, 187, 775, 1345, 1683
NlaIV GGNNCC 1 cut(s) 1657
NmuCI GTSAC 2 cut(s) 213, 1199
NsiI ATGCAT 3 cut(s) 631, 1246, 1631
NspI RCATGY 2 cut(s) 562, 590
NspV TTCGAA 1 cut(s) 1400
PaeI GCATGC 1 cut(s) 562
PagI TCATGA 2 cut(s) 103, 142
PctI GAATGC 3 cut(s) 548, 660, 1030
PfeI GAWTC 5 cut(s) 273, 1036, 1297, 1336, 1478
PflMI CCANNNNNTGG 1 cut(s) 1245
PkrI GCNGC 2 cut(s) 26, 1597
PleI GAGTC 5 cut(s) 108, 220, 372, 495, 630
PpsI GAGTC 5 cut(s) 108, 220, 372, 495, 630
PspN4I GGNNCC 1 cut(s) 1657
PsuI RGATCY 3 cut(s) 187, 775, 1683
PvuII CAGCTG 1 cut(s) 1054
RsaI GTAC 3 cut(s) 767, 1211, 1701
RsaNI GTAC 3 cut(s) 766, 1210, 1700
RseI CAYNNNNRTG 3 cut(s) 57, 557, 1324
SaqAI TTAA 3 cut(s) 63, 780, 1323
SatI GCNGC 2 cut(s) 25, 1596
Sau3AI GATC 5 cut(s) 133, 187, 775, 1345, 1683
SchI GAGTC 5 cut(s) 109, 221, 372, 496, 631
ScrFI CCNGG 2 cut(s) 1261, 1661
SduI GDGCHC 2 cut(s) 934, 1660
SfaNI GCATC 4 cut(s) 196, 627, 697, 1455
SfcI CTRYAG 1 cut(s) 218
SfuI TTCGAA 1 cut(s) 1400
SmiMI CAYNNNNRTG 3 cut(s) 57, 557, 1324
SmlI CTYRAG 1 cut(s) 594
SmoI CTYRAG 1 cut(s) 594
SphI GCATGC 1 cut(s) 562
SsiI CCGC 1 cut(s) 27
SspMI CTAG 7 cut(s) 665, 672, 740, 986, 1274, 1412, 1688
StyD4I CCNGG 2 cut(s) 1259, 1659
StyI CCWWGG 1 cut(s) 508
TaaI ACNGT 1 cut(s) 1087
TaiI ACGT 2 cut(s) 767, 1456
TaqI TCGA 3 cut(s) 276, 1400, 1615
TatI WGTACW 2 cut(s) 1209, 1699
TfiI GAWTC 5 cut(s) 273, 1036, 1297, 1336, 1478
Tru1I TTAA 3 cut(s) 63, 780, 1323
Tru9I TTAA 3 cut(s) 63, 780, 1323
TscAI CASTG 6 cut(s) 17, 367, 934, 1090, 1260, 1698
TseFI GTSAC 2 cut(s) 213, 1199
TseI GCWGC 2 cut(s) 24, 1595
Tsp45I GTSAC 2 cut(s) 213, 1199
TspGWI ACGGA 1 cut(s) 1199
TspRI CASTG 6 cut(s) 17, 367, 934, 1090, 1260, 1698
Van91I CCANNNNNTGG 1 cut(s) 1245
XapI RAATTY 3 cut(s) 423, 728, 1586
XceI RCATGY 2 cut(s) 562, 590
XmiI GTMKAC 1 cut(s) 153
XspI CTAG 7 cut(s) 665, 672, 740, 986, 1274, 1412, 1688
Zsp2I ATGCAT 3 cut(s) 631, 1246, 1631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.