pycom17g08710

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0000768
Physical Location & Seq
Forward (+)
6540919 .. 6543425
2507 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g08710.3

Sequence Viewer

Length: 1287 bp
ATGTATTTAGTAGCTAGATTCACGGATGGTAATGGAAGTTTCAAGGCATGGCTTTGCGAGGATGTAAAGGGAATGCTTAGTCTATACGAAGCTTCATATTTTTCTTTTGAAGGAGAGAGCCTCTTGGATGAGGGCCTTGCATTCTCAACCATTTATCTCAAGAACCTCAGTGGAGCCAATGTTACAAAAGGACTAGCAGAACAAGTGAGTCATGCACTGGAACTTCCACTGCACCATAGAATGCAAAGATTAGAAGCTAGATGGTACATTGAGGCATACAGTAAAAGGCCAGATGCAAATCACGCACTACTTGAAATTGCGAAGCGAGATTTTAACAAGGTGCAATCTACACTCCAAAGGGATCTTAAAGAAGTATCAAGGTGGTGGGTGGATATGGGGTTAGCAAAAAAGTTGAGCTTCATCAGAGACAGATTGATGGAGTGCTTTTTTTGGTCGATTGGAATCGTCTTTGAACCTCAACACAGTCATGTCAGGAAAGAGTTGACCAAAGTGGCTGCTCTAGTAACCACCATTGATGATGTCTATGATGTTTGTGGTACTTTGGATGAACTAGAGCTTTTTACTTCTGCTGTTGAAAGATGGGATATCAAAGCTGTAGAAAATCTCCCAGATTACATGAAGCTTTGTTTTCTAGCTCTTTATAACACAGTGAATGAGATGGTTTACGACACTCTAAAGGAGCAAGGAGAAAACGCCCTCCCTTATGTCACAAAAACTTGGGCTGATTTGTGCAAAGCATTTCTTAAGGAGACAACGTGGCTCTATAACAAGCACATACCCACATCTGAAGAATATATCGACACTGCATGGATATCAGCCTCAGGAGTGGTGGTGTTAGTTCATACATATTTTCTCCTCACCCCAAAGATCACAAAGCAAGCACTTGAATGCTTAGAAAATCACCACAATCTCTTGCGTTGGCCATCTCTTATTTTCCGGCTTTGCAATGATTTGAGTACTTTCGAAGCAGAAGTGCAGAGAGGAGAAACTGCGAACTCAATCTCATGCATGACGCGTGGCGGTATGAATGTTTCTGAGGAATTTGCTCGCGAATATATAAGTAATTTGGTTCAAAACAGTTGGAAGAAGCTGAACAAAGATGGAGCTTCTGGTTCTCCATTTACAGAGCAATTTGTACAAGCAGCAAGAAACCTTGCTCGGATTTCCCAATGCGTATACCAATATGGTGATGGGCATGGAGCTCCAGACACAAGAGCAAAGAATCGAATCCTATCAGTTATTATCGATCCCATTAAAGGACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

429

Amino Acids

48.95

Weight (kDa)

5.84

Isoelectric Point (pI)

30.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 663
AccI GTMKAC 1 cut(s) 1197
AccII CGCG 2 cut(s) 1036, 1071
AciI CCGC 1 cut(s) 1041
AclWI GGATC 2 cut(s) 369, 1262
AcoI YGGCCR 1 cut(s) 941
AcsI RAATTY 1 cut(s) 1061
AcuI CTGAAG 1 cut(s) 828
AfaI GTAC 4 cut(s) 266, 559, 979, 1158
AfiI CCNNNNNNNGG 1 cut(s) 1277
AflII CTTAAG 1 cut(s) 764
AflIII ACRYGT 1 cut(s) 1034
AgsI TTSAA 7 cut(s) 43, 110, 314, 473, 596, 908, 1094
Alw21I GWGCWC 1 cut(s) 1225
Alw26I GTCTC 2 cut(s) 420, 764
AlwI GGATC 2 cut(s) 369, 1262
AoxI GGCC 3 cut(s) 133, 287, 941
ApeKI GCWGC 2 cut(s) 515, 1163
ApoI RAATTY 1 cut(s) 1061
AspS9I GGNCC 2 cut(s) 133, 1280
AsuHPI GGTGA 3 cut(s) 871, 914, 1220
AsuII TTCGAA 1 cut(s) 984
AvaII GGWCC 1 cut(s) 1280
AxyI CCTNAGG 1 cut(s) 841
BalI TGGCCA 1 cut(s) 943
BanII GRGCYC 1 cut(s) 1225
Bbv12I GWGCWC 1 cut(s) 1225
BbvI GCAGC 2 cut(s) 502, 1175
BccI CCATC 8 cut(s) 20, 255, 430, 594, 673, 952, 1115, 1205
BcoDI GTCTC 2 cut(s) 420, 764
BfaI CTAG 6 cut(s) 15, 194, 258, 521, 572, 653
BfmI CTRYAG 1 cut(s) 615
BfrI CTTAAG 1 cut(s) 764
BisI GCNGC 2 cut(s) 516, 1164
BlsI GCNGC 2 cut(s) 517, 1165
BmcAI AGTACT 1 cut(s) 979
Bme18I GGWCC 1 cut(s) 1280
BmgT120I GGNCC 2 cut(s) 133, 1280
BmiI GGNNCC 1 cut(s) 175
BmsI GCATC 1 cut(s) 283
BplI GAGNNNNNCTC 2 cut(s) 105, 137
BpmI CTGGAG 1 cut(s) 1209
Bpu14I TTCGAA 1 cut(s) 984
BpuEI CTTGAG 1 cut(s) 143
Bsa29I ATCGAT 1 cut(s) 1266
BsaBI GATNNNNATC 2 cut(s) 297, 461
BsaXI ACNNNNNCTCC 6 cut(s) 165, 195, 761, 791, 837, 867
Bsc4I CCNNNNNNNGG 1 cut(s) 1277
Bse1I ACTGG 1 cut(s) 222
Bse21I CCTNAGG 1 cut(s) 841
Bse3DI GCAATG 1 cut(s) 973
Bse8I GATNNNNATC 2 cut(s) 297, 461
BseCI ATCGAT 1 cut(s) 1266
BseGI GGATG 4 cut(s) 31, 67, 133, 571
BseJI GATNNNNATC 2 cut(s) 297, 461
BseLI CCNNNNNNNGG 1 cut(s) 1277
BseMI GCAATG 1 cut(s) 973
BseMII CTCAG 3 cut(s) 181, 855, 1047
BseNI ACTGG 1 cut(s) 222
BseRI GAGGAG 2 cut(s) 866, 1017
BseXI GCAGC 2 cut(s) 502, 1175
BsgI GTGCAG 2 cut(s) 215, 1016
Bsh1236I CGCG 2 cut(s) 1036, 1071
BshFI GGCC 3 cut(s) 135, 289, 943
BshVI ATCGAT 1 cut(s) 1266
BsiHKAI GWGCWC 1 cut(s) 1225
BsiSI CCGG 1 cut(s) 958
BslI CCNNNNNNNGG 1 cut(s) 1277
BsmAI GTCTC 2 cut(s) 420, 764
BsmI GAATGC 4 cut(s) 78, 140, 246, 914
BsnI GGCC 3 cut(s) 135, 289, 943
Bsp119I TTCGAA 1 cut(s) 984
Bsp1286I GDGCHC 1 cut(s) 1225
Bsp1407I TGTACA 1 cut(s) 1156
Bsp143I GATC 3 cut(s) 361, 888, 1267
Bsp68I TCGCGA 1 cut(s) 1071
BspACI CCGC 1 cut(s) 1041
BspANI GGCC 3 cut(s) 135, 289, 943
BspCNI CTCAG 3 cut(s) 180, 854, 1048
BspDI ATCGAT 1 cut(s) 1266
BspFNI CGCG 2 cut(s) 1036, 1071
BspLI GGNNCC 1 cut(s) 175
BspPI GGATC 2 cut(s) 369, 1262
BspT104I TTCGAA 1 cut(s) 984
BspTI CTTAAG 1 cut(s) 764
BsrDI GCAATG 1 cut(s) 973
BsrGI TGTACA 1 cut(s) 1156
BsrI ACTGG 1 cut(s) 222
BssMI GATC 3 cut(s) 361, 888, 1267
BssNAI GTATAC 1 cut(s) 1198
Bst1107I GTATAC 1 cut(s) 1198
Bst4CI ACNGT 4 cut(s) 281, 485, 670, 1100
BstAFI CTTAAG 1 cut(s) 764
BstAUI TGTACA 1 cut(s) 1156
BstBI TTCGAA 1 cut(s) 984
BstC8I GCNNGC 2 cut(s) 900, 1069
BstDEI CTNAG 5 cut(s) 77, 167, 841, 913, 1056
BstF5I GGATG 4 cut(s) 31, 67, 133, 571
BstFNI CGCG 2 cut(s) 1036, 1071
BstKTI GATC 3 cut(s) 364, 891, 1270
BstMAI GTCTC 2 cut(s) 420, 764
BstMBI GATC 3 cut(s) 361, 888, 1267
BstMWI GCNNNNNNNGC 1 cut(s) 302
BstSFI CTRYAG 1 cut(s) 615
BstUI CGCG 2 cut(s) 1036, 1071
BstV1I GCAGC 2 cut(s) 502, 1175
BstX2I RGATCY 1 cut(s) 361
BstYI RGATCY 1 cut(s) 361
BstZ17I GTATAC 1 cut(s) 1198
Bsu15I ATCGAT 1 cut(s) 1266
Bsu36I CCTNAGG 1 cut(s) 841
BsuRI GGCC 3 cut(s) 135, 289, 943
BsuTUI ATCGAT 1 cut(s) 1266
BtsCI GGATG 4 cut(s) 31, 67, 133, 571
BtsI GCAGTG 2 cut(s) 227, 822
BtsIMutI CAGTG 5 cut(s) 175, 215, 227, 675, 822
BtuMI TCGCGA 1 cut(s) 1071
Cac8I GCNNGC 2 cut(s) 900, 1069
Cfr13I GGNCC 2 cut(s) 133, 1280
ClaI ATCGAT 1 cut(s) 1266
CseI GACGC 1 cut(s) 1042
Csp6I GTAC 4 cut(s) 265, 558, 978, 1157
CviAII CATG 8 cut(s) 48, 212, 488, 637, 828, 1026, 1030, 1217
CviQI GTAC 4 cut(s) 265, 558, 978, 1157
DdeI CTNAG 5 cut(s) 77, 167, 841, 913, 1056
DpnI GATC 3 cut(s) 363, 890, 1269
DpnII GATC 3 cut(s) 361, 888, 1267
EaeI YGGCCR 1 cut(s) 941
Ecl136II GAGCTC 1 cut(s) 1223
Eco24I GRGCYC 1 cut(s) 1225
Eco32I GATATC 2 cut(s) 607, 834
Eco47I GGWCC 1 cut(s) 1280
Eco53kI GAGCTC 1 cut(s) 1223
Eco57I CTGAAG 1 cut(s) 828
Eco81I CCTNAGG 1 cut(s) 841
EcoICRI GAGCTC 1 cut(s) 1223
EcoO109I RGGNCCY 1 cut(s) 133
EcoRV GATATC 2 cut(s) 607, 834
EcoT22I ATGCAT 1 cut(s) 1031
EcoT38I GRGCYC 1 cut(s) 1225
FaeI CATG 8 cut(s) 51, 215, 491, 640, 831, 1029, 1033, 1220
FalI AAGNNNNNCTT 4 cut(s) 401, 433, 747, 779
FatI CATG 8 cut(s) 47, 211, 487, 636, 827, 1025, 1029, 1216
FblI GTMKAC 1 cut(s) 1197
Fnu4HI GCNGC 2 cut(s) 516, 1164
FokI GGATG 4 cut(s) 38, 74, 140, 578
FriOI GRGCYC 1 cut(s) 1225
Fsp4HI GCNGC 2 cut(s) 516, 1164
FspBI CTAG 6 cut(s) 15, 194, 258, 521, 572, 653
GluI GCNGC 2 cut(s) 516, 1164
GsuI CTGGAG 1 cut(s) 1209
HaeIII GGCC 3 cut(s) 135, 289, 943
HapII CCGG 1 cut(s) 958
HgaI GACGC 1 cut(s) 1042
Hin1II CATG 8 cut(s) 51, 215, 491, 640, 831, 1029, 1033, 1220
HincII GTYRAC 1 cut(s) 504
HindII GTYRAC 1 cut(s) 504
HindIII AAGCTT 2 cut(s) 90, 641
HinfI GANTC 5 cut(s) 18, 208, 462, 1243, 1248
HpaII CCGG 1 cut(s) 958
HphI GGTGA 3 cut(s) 871, 914, 1220
Hpy166II GTNNAC 3 cut(s) 504, 685, 1198
Hpy188I TCNGA 4 cut(s) 425, 808, 1057, 1182
Hpy188III TCNNGA 5 cut(s) 160, 493, 843, 1070, 1226
Hpy8I GTNNAC 3 cut(s) 504, 685, 1198
HpyAV CCTTC 1 cut(s) 104
HpyCH4III ACNGT 4 cut(s) 281, 485, 670, 1100
HpyCH4IV ACGT 1 cut(s) 776
HpyF10VI GCNNNNNNNGC 1 cut(s) 302
HpyF3I CTNAG 5 cut(s) 77, 167, 841, 913, 1056
HpySE526I ACGT 1 cut(s) 776
Hsp92II CATG 8 cut(s) 51, 215, 491, 640, 831, 1029, 1033, 1220
Kzo9I GATC 3 cut(s) 361, 888, 1267
LmnI GCTCC 5 cut(s) 173, 700, 1124, 1220, 1228
LpnPI CCDG 8 cut(s) 203, 303, 478, 642, 828, 971, 1116, 1239
Lsp1109I GCAGC 2 cut(s) 502, 1175
LweI GCATC 1 cut(s) 283
MaeI CTAG 6 cut(s) 15, 194, 258, 521, 572, 653
MaeII ACGT 1 cut(s) 776
MaeIII GTNAC 3 cut(s) 181, 523, 727
MalI GATC 3 cut(s) 363, 890, 1269
MboI GATC 3 cut(s) 361, 888, 1267
MboII GAAGA 2 cut(s) 821, 1117
MflI RGATCY 1 cut(s) 361
MhlI GDGCHC 1 cut(s) 1225
MlsI TGGCCA 1 cut(s) 943
MluCI AATT 4 cut(s) 315, 1061, 1084, 1151
MluI ACGCGT 1 cut(s) 1034
MluNI TGGCCA 1 cut(s) 943
MlyI GAGTC 1 cut(s) 217
MmeI TCCRAC 1 cut(s) 1082
Mox20I TGGCCA 1 cut(s) 943
Mph1103I ATGCAT 1 cut(s) 1031
MscI TGGCCA 1 cut(s) 943
MseI TTAA 4 cut(s) 333, 366, 765, 1275
MslI CAYNNNNRTG 2 cut(s) 486, 907
Msp20I TGGCCA 1 cut(s) 943
MspCI CTTAAG 1 cut(s) 764
MspI CCGG 1 cut(s) 958
Mva1269I GAATGC 4 cut(s) 78, 140, 246, 914
MvnI CGCG 2 cut(s) 1036, 1071
MwoI GCNNNNNNNGC 1 cut(s) 302
NdeII GATC 3 cut(s) 361, 888, 1267
NlaIII CATG 8 cut(s) 51, 215, 491, 640, 831, 1029, 1033, 1220
NlaIV GGNNCC 1 cut(s) 175
NmuCI GTSAC 1 cut(s) 727
NruI TCGCGA 1 cut(s) 1071
NsiI ATGCAT 1 cut(s) 1031
NspV TTCGAA 1 cut(s) 984
PctI GAATGC 4 cut(s) 78, 140, 246, 914
PfeI GAWTC 4 cut(s) 18, 462, 1243, 1248
PkrI GCNGC 2 cut(s) 517, 1165
PleI GAGTC 1 cut(s) 216
PpsI GAGTC 1 cut(s) 216
PsiI TTATAA 1 cut(s) 663
Psp124BI GAGCTC 1 cut(s) 1225
PspN4I GGNNCC 1 cut(s) 175
PspPI GGNCC 2 cut(s) 133, 1280
PsuI RGATCY 1 cut(s) 361
RruI TCGCGA 1 cut(s) 1071
RsaI GTAC 4 cut(s) 266, 559, 979, 1158
RsaNI GTAC 4 cut(s) 265, 558, 978, 1157
RseI CAYNNNNRTG 2 cut(s) 486, 907
SacI GAGCTC 1 cut(s) 1225
SaqAI TTAA 4 cut(s) 333, 366, 765, 1275
SatI GCNGC 2 cut(s) 516, 1164
Sau3AI GATC 3 cut(s) 361, 888, 1267
Sau96I GGNCC 2 cut(s) 133, 1280
ScaI AGTACT 1 cut(s) 979
SchI GAGTC 1 cut(s) 217
SduI GDGCHC 1 cut(s) 1225
SfaNI GCATC 1 cut(s) 283
SfcI CTRYAG 1 cut(s) 615
SfuI TTCGAA 1 cut(s) 984
SinI GGWCC 1 cut(s) 1280
SmiMI CAYNNNNRTG 2 cut(s) 486, 907
SmlI CTYRAG 2 cut(s) 158, 764
SmoI CTYRAG 2 cut(s) 158, 764
Sse9I AATT 4 cut(s) 315, 1061, 1084, 1151
SsiI CCGC 1 cut(s) 1041
SspMI CTAG 6 cut(s) 15, 194, 258, 521, 572, 653
SstI GAGCTC 1 cut(s) 1225
TaaI ACNGT 4 cut(s) 281, 485, 670, 1100
TaiI ACGT 1 cut(s) 779
TaqI TCGA 5 cut(s) 455, 819, 984, 1246, 1266
TasI AATT 4 cut(s) 315, 1061, 1084, 1151
TatI WGTACW 2 cut(s) 977, 1156
TfiI GAWTC 4 cut(s) 18, 462, 1243, 1248
Tru1I TTAA 4 cut(s) 333, 366, 765, 1275
Tru9I TTAA 4 cut(s) 333, 366, 765, 1275
TscAI CASTG 5 cut(s) 175, 222, 234, 675, 829
TseFI GTSAC 1 cut(s) 727
TseI GCWGC 2 cut(s) 515, 1163
Tsp45I GTSAC 1 cut(s) 727
TspDTI ATGAA 6 cut(s) 84, 409, 582, 653, 851, 1061
TspGWI ACGGA 1 cut(s) 38
TspRI CASTG 5 cut(s) 175, 222, 234, 675, 829
Vha464I CTTAAG 1 cut(s) 764
VpaK11BI GGWCC 1 cut(s) 1280
XapI RAATTY 1 cut(s) 1061
XcmI CCANNNNNNNNNTGG 1 cut(s) 1208
XmiI GTMKAC 1 cut(s) 1197
XspI CTAG 6 cut(s) 15, 194, 258, 521, 572, 653
ZrmI AGTACT 1 cut(s) 979
Zsp2I ATGCAT 1 cut(s) 1031
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.