Rh2BG562800

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000768
Physical Location & Seq
Reverse (-)
77415666 .. 77417568
1903 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG562800.1

Sequence Viewer

Length: 816 bp
ATGGATTGTGACGGCAGCTTTAAGGATTGCCATTGCAAAGATGTCAAAGGCATGCTAAGTCTGTATGAAGCTTCATTCCTTGGTATTGAAGGAGAAACCCTCTTGGATGAGGCTCTTGCATTCACCAGCCTGCACCTAAAGAACCTCAGTAGATTGCATGTTACTCAAGACAAAGGTGTATTAGAGCAAGTGAGTCATGCATTGGAGATGCCATTGCACCACAGAATGCAAAGATTAGAAGCTAGATGGTTTATTGAGGTATACAGTAAAAAGGCATATGAAAATCAGGTGCTACTTGAATTTGCCAAGCTAGATTACAATGTGGTGCAACAAACATACCAAAGAGATTTTAAAGATATTTCAAGATGGGATGTGAATGCTGTGGAAATTCTTTCAGACTACCAGCTTAAGCTCTGTTTCCTTGCTCTCTATAACACTGTGAATGAAATGACTTATGAAACTTTGAAGGAGCAAGGAGTGAACGTTCTTCCTTACCTGACAAAAGCTGCAGAACTAGAGAGAGGTGAAACTGCAACTTCAATATCCTGCATCAAACGTGGTGGTGTTGTTTCTGATGAGGAATCTGCTCACAAATATATTAGTAATTTGATTGAGAGTAGTTGGAAGAAGATGAACAAAGATGGACTAATATTTGGTGCCAATAGTGCTTCTTCTCCATTCACAAAAGAATTTGTAGCAGCAGCAACAAACCTTGCTCGAATTGCCCAATGTATCTACCAATATGGAGACGGGATTGGTGCCCCGGATAAAAGAGTAAAGAACCGGATCCTAGCAGTGATTGTACAACCTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

271

Amino Acids

30.68

Weight (kDa)

5.85

Isoelectric Point (pI)

32.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 2 - 68 5.7e-17 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 120 - 169 7.3e-09 Terpene synthase family, metal binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 656, 758
AccI GTMKAC 1 cut(s) 261
AclI AACGTT 1 cut(s) 483
AclWI GGATC 2 cut(s) 781, 794
AcsI RAATTY 3 cut(s) 299, 387, 689
AfaI GTAC 1 cut(s) 804
AflII CTTAAG 1 cut(s) 407
AgsI TTSAA 5 cut(s) 89, 299, 363, 466, 540
AloI GAACNNNNNNTCC 2 cut(s) 468, 500
AluBI AGCT 7 cut(s) 18, 71, 242, 310, 406, 412, 506
AluI AGCT 7 cut(s) 18, 71, 242, 310, 406, 412, 506
Alw26I GTCTC 1 cut(s) 741
AlwI GGATC 2 cut(s) 781, 794
ApeKI GCWGC 4 cut(s) 15, 506, 698, 701
ApoI RAATTY 3 cut(s) 299, 387, 689
AsuC2I CCSGG 1 cut(s) 764
AsuHPI GGTGA 2 cut(s) 115, 536
BaeGI GKGCMC 1 cut(s) 763
BamHI GGATCC 1 cut(s) 786
BanI GGYRCC 2 cut(s) 656, 758
BbvI GCAGC 4 cut(s) 27, 493, 710, 713
BccI CCATC 3 cut(s) 240, 360, 635
BceAI ACGGC 1 cut(s) 28
BcnI CCSGG 1 cut(s) 764
BcoDI GTCTC 1 cut(s) 741
BfaI CTAG 4 cut(s) 243, 311, 515, 791
BfmI CTRYAG 1 cut(s) 507
BfrI CTTAAG 1 cut(s) 407
BisI GCNGC 4 cut(s) 16, 507, 699, 702
BlsI GCNGC 4 cut(s) 17, 508, 700, 703
Bme1390I CCNGG 1 cut(s) 764
BmiI GGNNCC 3 cut(s) 658, 760, 788
BmrFI CCNGG 1 cut(s) 764
BmsI GCATC 2 cut(s) 198, 558
BplI GAGNNNNNCTC 2 cut(s) 84, 116
BpuEI CTTGAG 1 cut(s) 150
BpuMI CCSGG 1 cut(s) 764
BsaJI CCNNGG 2 cut(s) 79, 762
BsaWI WCCGGW 1 cut(s) 783
BsaXI ACNNNNNCTCC 2 cut(s) 468, 498
Bse3DI GCAATG 2 cut(s) 31, 212
BseDI CCNNGG 2 cut(s) 79, 762
BseGI GGATG 2 cut(s) 112, 376
BseMI GCAATG 2 cut(s) 31, 212
BseMII CTCAG 1 cut(s) 160
BseSI GKGCMC 1 cut(s) 763
BseXI GCAGC 4 cut(s) 27, 493, 710, 713
BsgI GTGCAG 1 cut(s) 116
BshNI GGYRCC 2 cut(s) 656, 758
BsiSI CCGG 2 cut(s) 764, 784
BsmAI GTCTC 1 cut(s) 741
BsmBI CGTCTC 1 cut(s) 741
BsmI GAATGC 3 cut(s) 119, 231, 382
Bsp1286I GDGCHC 1 cut(s) 763
Bsp1407I TGTACA 1 cut(s) 802
Bsp143I GATC 1 cut(s) 786
BspCNI CTCAG 1 cut(s) 159
BspLI GGNNCC 3 cut(s) 658, 760, 788
BspMAI CTGCAG 1 cut(s) 511
BspPI GGATC 2 cut(s) 781, 794
BspT107I GGYRCC 2 cut(s) 656, 758
BspTI CTTAAG 1 cut(s) 407
BsrDI GCAATG 2 cut(s) 31, 212
BsrGI TGTACA 1 cut(s) 802
BssECI CCNNGG 2 cut(s) 79, 762
BssMI GATC 1 cut(s) 786
BssNAI GTATAC 1 cut(s) 262
BssT1I CCWWGG 1 cut(s) 79
Bst1107I GTATAC 1 cut(s) 262
Bst4CI ACNGT 2 cut(s) 266, 439
BstAFI CTTAAG 1 cut(s) 407
BstAUI TGTACA 1 cut(s) 802
BstC8I GCNNGC 2 cut(s) 53, 131
BstDEI CTNAG 2 cut(s) 56, 146
BstF5I GGATG 2 cut(s) 112, 376
BstKTI GATC 1 cut(s) 789
BstMAI GTCTC 1 cut(s) 741
BstMBI GATC 1 cut(s) 786
BstMWI GCNNNNNNNGC 2 cut(s) 665, 722
BstNSI RCATGY 2 cut(s) 55, 161
BstSCI CCNGG 1 cut(s) 762
BstSFI CTRYAG 1 cut(s) 507
BstSLI GKGCMC 1 cut(s) 763
BstV1I GCAGC 4 cut(s) 27, 493, 710, 713
BstX2I RGATCY 1 cut(s) 786
BstYI RGATCY 1 cut(s) 786
BstZ17I GTATAC 1 cut(s) 262
BtsCI GGATG 2 cut(s) 112, 376
BtsI GCAGTG 1 cut(s) 801
BtsIMutI CAGTG 2 cut(s) 435, 801
Cac8I GCNNGC 2 cut(s) 53, 131
Csp6I GTAC 1 cut(s) 803
CspCI CAANNNNNGTGG 2 cut(s) 541, 576
CviAII CATG 3 cut(s) 52, 158, 197
CviJI RGCY 9 cut(s) 18, 71, 113, 129, 242, 310, 406, 412, 506
CviKI_1 RGCY 9 cut(s) 18, 71, 113, 129, 242, 310, 406, 412, 506
CviQI GTAC 1 cut(s) 803
DdeI CTNAG 2 cut(s) 56, 146
DpnI GATC 1 cut(s) 788
DpnII GATC 1 cut(s) 786
DraI TTTAAA 1 cut(s) 352
Eco130I CCWWGG 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 79
EcoT22I ATGCAT 1 cut(s) 202
ErhI CCWWGG 1 cut(s) 79
Esp3I CGTCTC 1 cut(s) 741
FaeI CATG 3 cut(s) 55, 161, 200
FatI CATG 3 cut(s) 51, 157, 196
FauNDI CATATG 1 cut(s) 277
FblI GTMKAC 1 cut(s) 261
Fnu4HI GCNGC 4 cut(s) 16, 507, 699, 702
FokI GGATG 2 cut(s) 119, 383
Fsp4HI GCNGC 4 cut(s) 16, 507, 699, 702
FspBI CTAG 4 cut(s) 243, 311, 515, 791
GluI GCNGC 4 cut(s) 16, 507, 699, 702
HapII CCGG 2 cut(s) 764, 784
Hin1II CATG 3 cut(s) 55, 161, 200
HindIII AAGCTT 1 cut(s) 69
HinfI GANTC 2 cut(s) 193, 581
HpaII CCGG 2 cut(s) 764, 784
HphI GGTGA 2 cut(s) 115, 536
Hpy166II GTNNAC 2 cut(s) 262, 481
Hpy188I TCNGA 2 cut(s) 397, 574
Hpy188III TCNNGA 2 cut(s) 167, 363
Hpy8I GTNNAC 2 cut(s) 262, 481
HpyAV CCTTC 2 cut(s) 83, 460
HpyCH4III ACNGT 2 cut(s) 266, 439
HpyCH4IV ACGT 2 cut(s) 483, 556
HpyF10VI GCNNNNNNNGC 2 cut(s) 665, 722
HpyF3I CTNAG 2 cut(s) 56, 146
HpySE526I ACGT 2 cut(s) 483, 556
Hsp92II CATG 3 cut(s) 55, 161, 200
Kzo9I GATC 1 cut(s) 786
LmnI GCTCC 1 cut(s) 469
LpnPI CCDG 8 cut(s) 139, 143, 272, 416, 509, 559, 777, 797
Lsp1109I GCAGC 4 cut(s) 27, 493, 710, 713
LweI GCATC 2 cut(s) 198, 558
MaeI CTAG 4 cut(s) 243, 311, 515, 791
MaeII ACGT 2 cut(s) 483, 556
MaeIII GTNAC 2 cut(s) 8, 160
MalI GATC 1 cut(s) 788
MboI GATC 1 cut(s) 786
MboII GAAGA 4 cut(s) 479, 637, 640, 663
MflI RGATCY 1 cut(s) 786
MhlI GDGCHC 1 cut(s) 763
MluCI AATT 5 cut(s) 299, 387, 604, 689, 720
MlyI GAGTC 1 cut(s) 202
MmeI TCCRAC 1 cut(s) 602
MnlI CCTC 6 cut(s) 103, 110, 155, 250, 515, 571
Mph1103I ATGCAT 1 cut(s) 202
MseI TTAA 3 cut(s) 21, 351, 408
MspCI CTTAAG 1 cut(s) 407
MspI CCGG 2 cut(s) 764, 784
MspR9I CCNGG 1 cut(s) 764
Mva1269I GAATGC 3 cut(s) 119, 231, 382
MwoI GCNNNNNNNGC 2 cut(s) 665, 722
NciI CCSGG 1 cut(s) 764
NdeI CATATG 1 cut(s) 277
NdeII GATC 1 cut(s) 786
NlaIII CATG 3 cut(s) 55, 161, 200
NlaIV GGNNCC 3 cut(s) 658, 760, 788
NmuCI GTSAC 1 cut(s) 8
NsiI ATGCAT 1 cut(s) 202
NspI RCATGY 2 cut(s) 55, 161
PaeI GCATGC 1 cut(s) 55
PctI GAATGC 3 cut(s) 119, 231, 382
PfeI GAWTC 1 cut(s) 581
PkrI GCNGC 4 cut(s) 17, 508, 700, 703
PleI GAGTC 1 cut(s) 201
PpsI GAGTC 1 cut(s) 201
Psp1406I AACGTT 1 cut(s) 483
PspN4I GGNNCC 3 cut(s) 658, 760, 788
PstI CTGCAG 1 cut(s) 511
PsuI RGATCY 1 cut(s) 786
RsaI GTAC 1 cut(s) 804
RsaNI GTAC 1 cut(s) 803
SaqAI TTAA 3 cut(s) 21, 351, 408
SatI GCNGC 4 cut(s) 16, 507, 699, 702
Sau3AI GATC 1 cut(s) 786
SchI GAGTC 1 cut(s) 202
ScrFI CCNGG 1 cut(s) 764
SduI GDGCHC 1 cut(s) 763
SfaNI GCATC 2 cut(s) 198, 558
SfcI CTRYAG 1 cut(s) 507
SmlI CTYRAG 2 cut(s) 165, 407
SmoI CTYRAG 2 cut(s) 165, 407
SphI GCATGC 1 cut(s) 55
Sse9I AATT 5 cut(s) 299, 387, 604, 689, 720
SspI AATATT 1 cut(s) 651
SspMI CTAG 4 cut(s) 243, 311, 515, 791
StyD4I CCNGG 1 cut(s) 762
StyI CCWWGG 1 cut(s) 79
TaaI ACNGT 2 cut(s) 266, 439
TaiI ACGT 2 cut(s) 486, 559
TaqI TCGA 1 cut(s) 718
TasI AATT 5 cut(s) 299, 387, 604, 689, 720
TatI WGTACW 1 cut(s) 802
TfiI GAWTC 1 cut(s) 581
Tru1I TTAA 3 cut(s) 21, 351, 408
Tru9I TTAA 3 cut(s) 21, 351, 408
TscAI CASTG 2 cut(s) 442, 801
TseFI GTSAC 1 cut(s) 8
TseI GCWGC 4 cut(s) 15, 506, 698, 701
Tsp45I GTSAC 1 cut(s) 8
TspDTI ATGAA 6 cut(s) 63, 81, 294, 459, 471, 647
TspRI CASTG 2 cut(s) 442, 801
Vha464I CTTAAG 1 cut(s) 407
XapI RAATTY 3 cut(s) 299, 387, 689
XceI RCATGY 2 cut(s) 55, 161
XmiI GTMKAC 1 cut(s) 261
XspI CTAG 4 cut(s) 243, 311, 515, 791
Zsp2I ATGCAT 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.