Rh2DG572200

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000768
Physical Location & Seq
Reverse (-)
80218740 .. 80222888
4149 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG572200.1

Sequence Viewer

Length: 1068 bp
ATGTCTACCCAATGCTTAGCGAGCAGCGGTAGCACTACTGCTCAAACTTCACATCTGGATGTTAAAAGACTGACAGCAAATTACAAGCCAAGTATTTGGAGTTGTGATTTTCTTCAGTCGTTACAGATTGATGATCATAATCATGAAGAAGTATTTGGAGATAATAGGTGGAAGTTGATGGAGGAGAATCTGAAAAATATGATTGATGCAGAGTCACTAGAGATTACACTTGAATTGATTGATGACATCCAACGATTAGGTTTGGGACACCGATTCGAGGCCAGTATAAAAGAAACCCTTAATAGAGTTTTAAAGAATCTTGACCAAATAACAGACGAGGATACTCCAAATCTTCACCTCATTGCTCTAAGCTTTAGGCTCCTCAGACATCATGGGTTTCAAGTCTCCCAAGATGTTTTCAAATTTTTCATGGATTGTGACGGCAGCTTTAAGGATTGCCTTTGCAAAGATGTCAAAGGCATGCTAAGTCTGTATGAAGCTTCATTCCTTGGTATTGAAGGAGAAACCCTCTTGGATGAGGCTCTTGCATTCACCAGCATGCACCTAAAGAACCTCAGTAGATTGCATGTTACTCAAGACAAAGGTGTATTAGAGCAAGTGAGTCATGCATTAGAGATGCCATTGCACCACAGAATGCAAAGATTAGAAGCTAGATGGTATATTGAGGCATACAGTAAAAAGGCATATGCAAATCAGGTGCTACTTGAATTTGCCAAGCTAGATTACAATGTGGTGCAACAAACATACCAAAGAGATTTTAAAGATATTTCGAGATGGGATGTGAATGCTGTGGAAATTCTTTCAGACTACCAGCTGAAGCTCTGTTTCCTTGCTCTCTATAACACTGTGAATGAAATGACTTATGAAACTTTGAAGGAGCAAGGAGTGAACATTCTTCCTTACTTGACAAAAGCTGGAATTGGTCCAATACATCATGCTTTTGTTTGGGTGGCTTGTGCTAGCAAACTTCATGCTAGCTTGGTAACCAAGAAGATTGAATTCGTGTTTGGTGCTGAACATGAATTAAGTTTTCTTTTTAAAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

355

Amino Acids

40.92

Weight (kDa)

5.58

Isoelectric Point (pI)

35.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 32 - 211 5.4e-49 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 263 - 312 2.4e-08 Terpene synthase family, metal binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 5
AciI CCGC 1 cut(s) 27
AcsI RAATTY 4 cut(s) 422, 728, 816, 1019
AcuI CTGAAG 2 cut(s) 98, 857
AfiI CCNNNNNNNGG 1 cut(s) 277
AgsI TTSAA 7 cut(s) 233, 401, 421, 518, 728, 895, 1019
AjuI GAANNNNNNNTTGG 4 cut(s) 138, 170, 1011, 1043
AluBI AGCT 9 cut(s) 372, 447, 500, 671, 739, 835, 841, 935, 999
AluI AGCT 9 cut(s) 372, 447, 500, 671, 739, 835, 841, 935, 999
Alw26I GTCTC 1 cut(s) 409
AoxI GGCC 1 cut(s) 279
ApeKI GCWGC 2 cut(s) 24, 444
ApoI RAATTY 4 cut(s) 422, 728, 816, 1019
AspS9I GGNCC 1 cut(s) 944
AsuHPI GGTGA 2 cut(s) 347, 544
AsuNHI GCTAGC 2 cut(s) 980, 995
AvaII GGWCC 1 cut(s) 944
BbvI GCAGC 2 cut(s) 36, 456
BccI CCATC 3 cut(s) 172, 669, 789
BceAI ACGGC 1 cut(s) 457
BciVI GTATCC 1 cut(s) 334
BclI TGATCA 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 409
BfaI CTAG 5 cut(s) 218, 672, 740, 981, 996
BfuI GTATCC 1 cut(s) 334
BisI GCNGC 2 cut(s) 25, 445
BlpI GCTNAGC 1 cut(s) 16
BlsI GCNGC 2 cut(s) 26, 446
Bme18I GGWCC 1 cut(s) 944
BmgT120I GGNCC 1 cut(s) 944
BmiI GGNNCC 1 cut(s) 380
BmsI GCATC 2 cut(s) 196, 627
BmtI GCTAGC 2 cut(s) 984, 999
BplI GAGNNNNNCTC 2 cut(s) 513, 545
Bpu1102I GCTNAGC 1 cut(s) 16
BpuEI CTTGAG 1 cut(s) 579
BsaBI GATNNNNATC 1 cut(s) 138
BsaJI CCNNGG 1 cut(s) 508
Bsc4I CCNNNNNNNGG 1 cut(s) 277
Bse1I ACTGG 1 cut(s) 282
Bse3DI GCAATG 2 cut(s) 360, 641
Bse8I GATNNNNATC 1 cut(s) 138
BseDI CCNNGG 1 cut(s) 508
BseGI GGATG 4 cut(s) 64, 246, 541, 805
BseJI GATNNNNATC 1 cut(s) 138
BseLI CCNNNNNNNGG 1 cut(s) 277
BseMI GCAATG 2 cut(s) 360, 641
BseMII CTCAG 2 cut(s) 397, 589
BseNI ACTGG 1 cut(s) 282
BseRI GAGGAG 2 cut(s) 197, 371
BseXI GCAGC 2 cut(s) 36, 456
BshFI GGCC 1 cut(s) 281
BslFI GGGAC 1 cut(s) 279
BslI CCNNNNNNNGG 1 cut(s) 277
BsmAI GTCTC 1 cut(s) 409
BsmFI GGGAC 1 cut(s) 279
BsmI GAATGC 3 cut(s) 548, 660, 811
BsnI GGCC 1 cut(s) 281
Bsp143I GATC 1 cut(s) 133
Bsp1720I GCTNAGC 1 cut(s) 16
BspACI CCGC 1 cut(s) 27
BspANI GGCC 1 cut(s) 281
BspCNI CTCAG 2 cut(s) 396, 588
BspHI TCATGA 1 cut(s) 142
BspLI GGNNCC 1 cut(s) 380
BspOI GCTAGC 2 cut(s) 984, 999
BsrDI GCAATG 2 cut(s) 360, 641
BsrI ACTGG 1 cut(s) 282
BssECI CCNNGG 1 cut(s) 508
BssMI GATC 1 cut(s) 133
BssT1I CCWWGG 1 cut(s) 508
Bst4CI ACNGT 2 cut(s) 695, 868
BstC8I GCNNGC 5 cut(s) 22, 482, 560, 982, 997
BstDEI CTNAG 5 cut(s) 16, 368, 383, 485, 575
BstEII GGTNACC 1 cut(s) 1003
BstF5I GGATG 4 cut(s) 64, 246, 541, 805
BstKTI GATC 1 cut(s) 136
BstMAI GTCTC 1 cut(s) 409
BstMBI GATC 1 cut(s) 133
BstMWI GCNNNNNNNGC 2 cut(s) 21, 30
BstNSI RCATGY 3 cut(s) 484, 562, 590
BstPI GGTNACC 1 cut(s) 1003
BstV1I GCAGC 2 cut(s) 36, 456
BstXI CCANNNNNNTGG 1 cut(s) 96
BsuI GTATCC 1 cut(s) 334
BsuRI GGCC 1 cut(s) 281
BtsCI GGATG 4 cut(s) 64, 246, 541, 805
BtsIMutI CAGTG 1 cut(s) 864
Cac8I GCNNGC 5 cut(s) 22, 482, 560, 982, 997
CciI TCATGA 1 cut(s) 142
Cfr13I GGNCC 1 cut(s) 944
DdeI CTNAG 5 cut(s) 16, 368, 383, 485, 575
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
DraI TTTAAA 3 cut(s) 312, 781, 1060
Eco130I CCWWGG 1 cut(s) 508
Eco47I GGWCC 1 cut(s) 944
Eco57I CTGAAG 2 cut(s) 98, 857
Eco91I GGTNACC 1 cut(s) 1003
EcoO65I GGTNACC 1 cut(s) 1003
EcoRI GAATTC 1 cut(s) 1019
EcoT14I CCWWGG 1 cut(s) 508
EcoT22I ATGCAT 1 cut(s) 631
ErhI CCWWGG 1 cut(s) 508
FalI AAGNNNNNCTT 2 cut(s) 282, 314
FaqI GGGAC 1 cut(s) 279
FauNDI CATATG 1 cut(s) 706
FbaI TGATCA 1 cut(s) 133
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 2 cut(s) 25, 445
FokI GGATG 4 cut(s) 71, 233, 548, 812
Fsp4HI GCNGC 2 cut(s) 25, 445
FspBI CTAG 5 cut(s) 218, 672, 740, 981, 996
GluI GCNGC 2 cut(s) 25, 445
HaeIII GGCC 1 cut(s) 281
HindIII AAGCTT 2 cut(s) 370, 498
HinfI GANTC 5 cut(s) 187, 212, 273, 316, 622
HphI GGTGA 2 cut(s) 347, 544
Hpy166II GTNNAC 2 cut(s) 6, 910
Hpy188I TCNGA 3 cut(s) 192, 386, 826
Hpy188III TCNNGA 5 cut(s) 56, 143, 320, 596, 792
Hpy8I GTNNAC 2 cut(s) 6, 910
HpyAV CCTTC 2 cut(s) 512, 889
HpyCH4III ACNGT 2 cut(s) 695, 868
HpyF10VI GCNNNNNNNGC 2 cut(s) 21, 30
HpyF3I CTNAG 5 cut(s) 16, 368, 383, 485, 575
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 1 cut(s) 133
LmnI GCTCC 2 cut(s) 384, 898
LpnPI CCDG 6 cut(s) 41, 295, 568, 701, 845, 921
Lsp1109I GCAGC 2 cut(s) 36, 456
LweI GCATC 2 cut(s) 196, 627
MaeI CTAG 5 cut(s) 218, 672, 740, 981, 996
MaeIII GTNAC 5 cut(s) 120, 213, 437, 589, 1003
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MboII GAAGA 5 cut(s) 104, 158, 344, 908, 1024
MluCI AATT 8 cut(s) 79, 233, 422, 728, 816, 939, 1019, 1043
MlyI GAGTC 2 cut(s) 221, 631
MmeI TCCRAC 1 cut(s) 274
MnlI CCTC 9 cut(s) 175, 271, 331, 368, 392, 532, 539, 584, 679
Mph1103I ATGCAT 1 cut(s) 631
MseI TTAA 7 cut(s) 63, 300, 311, 450, 780, 1046, 1059
MslI CAYNNNNRTG 3 cut(s) 57, 141, 557
MspA1I CMGCKG 2 cut(s) 27, 835
Mva1269I GAATGC 3 cut(s) 548, 660, 811
MwoI GCNNNNNNNGC 2 cut(s) 21, 30
NdeI CATATG 1 cut(s) 706
NdeII GATC 1 cut(s) 133
NheI GCTAGC 2 cut(s) 980, 995
NlaIV GGNNCC 1 cut(s) 380
NmuCI GTSAC 2 cut(s) 213, 437
NsiI ATGCAT 1 cut(s) 631
NspI RCATGY 3 cut(s) 484, 562, 590
PaeI GCATGC 2 cut(s) 484, 562
PagI TCATGA 1 cut(s) 142
PctI GAATGC 3 cut(s) 548, 660, 811
PfeI GAWTC 3 cut(s) 187, 273, 316
PkrI GCNGC 2 cut(s) 26, 446
PleI GAGTC 2 cut(s) 220, 630
PpsI GAGTC 2 cut(s) 220, 630
PspEI GGTNACC 1 cut(s) 1003
PspN4I GGNNCC 1 cut(s) 380
PspPI GGNCC 1 cut(s) 944
PvuII CAGCTG 1 cut(s) 835
RseI CAYNNNNRTG 3 cut(s) 57, 141, 557
SaqAI TTAA 7 cut(s) 63, 300, 311, 450, 780, 1046, 1059
SatI GCNGC 2 cut(s) 25, 445
Sau3AI GATC 1 cut(s) 133
Sau96I GGNCC 1 cut(s) 944
SchI GAGTC 2 cut(s) 221, 631
SfaNI GCATC 2 cut(s) 196, 627
SinI GGWCC 1 cut(s) 944
SmiMI CAYNNNNRTG 3 cut(s) 57, 141, 557
SmlI CTYRAG 1 cut(s) 594
SmoI CTYRAG 1 cut(s) 594
SphI GCATGC 2 cut(s) 484, 562
Sse9I AATT 8 cut(s) 79, 233, 422, 728, 816, 939, 1019, 1043
SsiI CCGC 1 cut(s) 27
SspMI CTAG 5 cut(s) 218, 672, 740, 981, 996
StyI CCWWGG 1 cut(s) 508
TaaI ACNGT 2 cut(s) 695, 868
TaqI TCGA 2 cut(s) 276, 791
TasI AATT 8 cut(s) 79, 233, 422, 728, 816, 939, 1019, 1043
TfiI GAWTC 3 cut(s) 187, 273, 316
Tru1I TTAA 7 cut(s) 63, 300, 311, 450, 780, 1046, 1059
Tru9I TTAA 7 cut(s) 63, 300, 311, 450, 780, 1046, 1059
TscAI CASTG 1 cut(s) 871
TseFI GTSAC 2 cut(s) 213, 437
TseI GCWGC 2 cut(s) 24, 444
Tsp45I GTSAC 2 cut(s) 213, 437
TspDTI ATGAA 8 cut(s) 159, 418, 492, 510, 888, 900, 980, 1056
TspRI CASTG 1 cut(s) 871
VpaK11BI GGWCC 1 cut(s) 944
XapI RAATTY 4 cut(s) 422, 728, 816, 1019
XceI RCATGY 3 cut(s) 484, 562, 590
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 5 cut(s) 218, 672, 740, 981, 996
Zsp2I ATGCAT 1 cut(s) 631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.