AT4G16730

synthase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
9402898 .. 9406136
3239 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G16730.2

Sequence Viewer

Length: 1620 bp
ATGGGATCATCAATATCTCCTCTCGCTCGAGAATATATATATGTGAAAGAAGTTGAAACCGCGGAGAAAGCTATATTGTTTAAAGAAGAGGTGAGGAAGACATTAAATGAAATTGAAGGTTCTATTGAGCAGCTAGAAATGATCGATTCTCTGCAAAGACTCGGAATCTCGTATCACTATAAACATGAAATCCATGATATTTTGAGAAAAATTCATGACCAACACGGCGAAATTGAGAGGGAAACACAAGATCTTCATGCTACATCACTTGAATTTATTCTCTTAAGGCAACATGGTTTTGATGTCTCGCAAGATGCTTTTGACGTTTTCATAAGTGAGACCGGAGAATTCAGAAAAACTTTACACAGCGATATCAAAGGTTTACTCTCTCTATACGAAGCTTCTTATTTTTCAATGGATTCGGAGTTTAAACTCAAGGAGACTAGAATTTATGCAAACAAGCGGTTAAGTGAGTTTGTCGCGGAAAGTAGCAAAACTATTTGCAGAGAAGATGAAACTTATATATTAGAGATGGTGAAACGAGCACTAGAGACGCCGTACCATTGGAGCATACGAAGATTAGAAGCAAGATGGTACATAAATGTGTACGAAAAAAAGCATGAAATGAACCCTCTCTTGCTAGAGTTTGCAGCAATTGATTTCAACATGTTACAAGCTAATCATCAAGAAGAACTTAAACTTATTTCTAGTTGGTGGAACAGCACAGGACTTATGAAACAACTTGATTTCGTGAGAGACCGAATCACAGAGAGTTATTTTTGGACCATTGGAATATTTTACGAACCAGAGTTTAAATACTGCCGCAAGATACTCACCAAAATATTCATGTTAATTGTGATTATGGATGATATCTACGACATCTATGGTACATTAGAGGAGCTCGAGCTTTTCACAAATGTGGTCGAAAAATGGGATGTGAACCATGTTGAAAGACTTCCCAACTACATGAGAATGTGTTTTCTTTTTCTATACAATGAGATCAACCAAATAGGATACGATGTTCTCAGAGACAAAGGACTTAACGTTATCCCTTACCTCAAACAAGTTTGGACGGATCTATTTAAAACGTTCCTAACTGAATCCAAGTGGTACAAAACTGGACACAAACCAAGTTTCGAAGAATACATGCAAAACGGTGTGATCTCGAGTTCTGTCCCAACGATACTGCTCCACCTTTTCTCCGTCCTATCCGACCACATCTCCGACCAAACCCTAACCGATGATTCCAAAAACCACTCTGTCGTCCGGAGCTGTGCCACCATTCTCCGTCTCGCTAATGATCTTGCCACCTCAACGGAGGAGATGGCAAGAGGAGATTCCCCAAAGTCGGTCCAATGTTACATGTATGAGACAAGAGCAAGTGAGGAAGAGGCACGTAGACACATGCAAAGTATGATCAGCGACTCTTGGGACATTATAAACTCCGATTTAAAAACGGCACACACTTCTTCTCTTCCTCGTGGTTTTCTGGCAGCCGCCGCAAATCTTAACCGCGTGGTACAGTGTATCTACCGGCACGGTGATGGCCACGGAAGCCCAGAAAAGACCAAGACCGTTGATTATATCCAATCAGTACTCTTCAATCCCGTTCCGTTATAG

Protein Analysis

539

Amino Acids

63.18

Weight (kDa)

5.46

Isoelectric Point (pI)

46.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 1 - 137 2.5e-40 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 196 - 432 2.3e-91 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 234 - 432 3.2e-54 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1439
AccI GTMKAC 1 cut(s) 1399
AccII CGCG 3 cut(s) 62, 482, 1515
AccIII TCCGGA 1 cut(s) 1266
AciI CCGC 8 cut(s) 60, 62, 463, 482, 823, 1497, 1500, 1513
AclI AACGTT 2 cut(s) 1044, 1088
AclWI GGATC 2 cut(s) 13, 1083
AcoI YGGCCR 1 cut(s) 1546
AcsI RAATTY 4 cut(s) 210, 272, 347, 447
AcyI GRCGYC 1 cut(s) 554
AfaI GTAC 7 cut(s) 560, 596, 608, 889, 1112, 1521, 1596
AfiI CCNNNNNNNGG 1 cut(s) 1348
AflII CTTAAG 1 cut(s) 283
AflIII ACRYGT 2 cut(s) 666, 1362
AgsI TTSAA 7 cut(s) 56, 116, 272, 414, 664, 950, 1603
AleI CACNNNNGTG 1 cut(s) 917
AloI GAACNNNNNNTCC 2 cut(s) 1005, 1037
AluBI AGCT 7 cut(s) 71, 133, 401, 677, 901, 907, 1272
AluI AGCT 7 cut(s) 71, 133, 401, 677, 901, 907, 1272
Alw21I GWGCWC 2 cut(s) 547, 903
Alw26I GTCTC 8 cut(s) 310, 332, 434, 545, 750, 1023, 1295, 1364
AlwI GGATC 2 cut(s) 13, 1083
Ama87I CYCGRG 3 cut(s) 27, 902, 1165
Aor13HI TCCGGA 1 cut(s) 1266
AoxI GGCC 1 cut(s) 1546
ApeKI GCWGC 3 cut(s) 130, 650, 1493
ApoI RAATTY 4 cut(s) 210, 272, 347, 447
Asp700I GAANNNNTTC 2 cut(s) 276, 954
AspS9I GGNCC 2 cut(s) 783, 1351
AsuHPI GGTGA 4 cut(s) 103, 547, 826, 1553
AsuII TTCGAA 1 cut(s) 1137
AvaI CYCGRG 3 cut(s) 27, 902, 1165
AvaII GGWCC 2 cut(s) 783, 1351
BalI TGGCCA 1 cut(s) 1548
BanII GRGCYC 1 cut(s) 903
BauI CACGAG 1 cut(s) 1479
BbsI GAAGAC 1 cut(s) 104
Bbv12I GWGCWC 2 cut(s) 547, 903
BbvI GCAGC 3 cut(s) 142, 662, 1505
BccI CCATC 4 cut(s) 526, 585, 1318, 1538
BceAI ACGGC 3 cut(s) 241, 541, 1473
BciVI GTATCC 1 cut(s) 1007
BclI TGATCA 1 cut(s) 1416
BcoDI GTCTC 8 cut(s) 310, 332, 434, 545, 750, 1023, 1295, 1364
BfaI CTAG 5 cut(s) 134, 444, 548, 641, 708
BfrI CTTAAG 1 cut(s) 283
BfuI GTATCC 1 cut(s) 1007
BglII AGATCT 1 cut(s) 250
BisI GCNGC 6 cut(s) 131, 651, 823, 1494, 1497, 1500
BlsI GCNGC 6 cut(s) 132, 652, 824, 1495, 1498, 1501
BmcAI AGTACT 1 cut(s) 1596
Bme18I GGWCC 2 cut(s) 783, 1351
BmeT110I CYCGRG 3 cut(s) 27, 902, 1165
BmgT120I GGNCC 2 cut(s) 783, 1351
BmsI GCATC 1 cut(s) 304
BpiI GAAGAC 1 cut(s) 104
Bpu14I TTCGAA 1 cut(s) 1137
BpuEI CTTGAG 1 cut(s) 419
Bsa29I ATCGAT 1 cut(s) 144
BsaAI YACGTR 1 cut(s) 1397
BsaHI GRCGYC 1 cut(s) 554
BsaI GGTCTC 2 cut(s) 332, 750
BsaJI CCNNGG 2 cut(s) 60, 1549
BsaWI WCCGGW 2 cut(s) 341, 1266
BsaXI ACNNNNNCTCC 4 cut(s) 1184, 1205, 1214, 1235
Bsc4I CCNNNNNNNGG 1 cut(s) 1348
Bse118I RCCGGY 1 cut(s) 1533
Bse1I ACTGG 1 cut(s) 1123
BseAI TCCGGA 1 cut(s) 1266
BseCI ATCGAT 1 cut(s) 144
BseDI CCNNGG 2 cut(s) 60, 1549
BseGI GGATG 2 cut(s) 871, 940
BseLI CCNNNNNNNGG 1 cut(s) 1348
BseMII CTCAG 1 cut(s) 1039
BseNI ACTGG 1 cut(s) 1123
BseRI GAGGAG 4 cut(s) 9, 911, 1334, 1347
BseXI GCAGC 3 cut(s) 142, 662, 1505
Bsh1236I CGCG 3 cut(s) 62, 482, 1515
BshFI GGCC 1 cut(s) 1548
BshVI ATCGAT 1 cut(s) 144
BsiHKAI GWGCWC 2 cut(s) 547, 903
BsiHKCI CYCGRG 3 cut(s) 27, 902, 1165
BsiSI CCGG 3 cut(s) 342, 1267, 1534
BslFI GGGAC 2 cut(s) 1160, 1445
BslI CCNNNNNNNGG 1 cut(s) 1348
BsmAI GTCTC 8 cut(s) 310, 332, 434, 545, 750, 1023, 1295, 1364
BsmBI CGTCTC 2 cut(s) 545, 1295
BsmFI GGGAC 2 cut(s) 1160, 1445
BsnI GGCC 1 cut(s) 1548
Bso31I GGTCTC 2 cut(s) 332, 750
BsoBI CYCGRG 3 cut(s) 27, 902, 1165
Bsp119I TTCGAA 1 cut(s) 1137
Bsp1286I GDGCHC 2 cut(s) 547, 903
Bsp13I TCCGGA 1 cut(s) 1266
Bsp143I GATC 8 cut(s) 5, 141, 250, 999, 1075, 1161, 1300, 1416
BspACI CCGC 8 cut(s) 60, 62, 463, 482, 823, 1497, 1500, 1513
BspANI GGCC 1 cut(s) 1548
BspCNI CTCAG 1 cut(s) 1038
BspDI ATCGAT 1 cut(s) 144
BspEI TCCGGA 1 cut(s) 1266
BspFNI CGCG 3 cut(s) 62, 482, 1515
BspHI TCATGA 1 cut(s) 214
BspPI GGATC 2 cut(s) 13, 1083
BspT104I TTCGAA 1 cut(s) 1137
BspTI CTTAAG 1 cut(s) 283
BspTNI GGTCTC 2 cut(s) 332, 750
BsrFI RCCGGY 1 cut(s) 1533
BsrI ACTGG 1 cut(s) 1123
BssAI RCCGGY 1 cut(s) 1533
BssECI CCNNGG 2 cut(s) 60, 1549
BssMI GATC 8 cut(s) 5, 141, 250, 999, 1075, 1161, 1300, 1416
BssNI GRCGYC 1 cut(s) 554
BssSI CACGAG 1 cut(s) 1479
Bst2BI CACGAG 1 cut(s) 1479
Bst4CI ACNGT 4 cut(s) 1157, 1524, 1541, 1576
Bst6I CTCTTC 4 cut(s) 81, 1383, 1479, 1604
BstACI GRCGYC 1 cut(s) 554
BstAFI CTTAAG 1 cut(s) 283
BstBAI YACGTR 1 cut(s) 1397
BstBI TTCGAA 1 cut(s) 1137
BstDEI CTNAG 1 cut(s) 1025
BstDSI CCRYGG 2 cut(s) 60, 1549
BstF5I GGATG 2 cut(s) 871, 940
BstFNI CGCG 3 cut(s) 62, 482, 1515
BstKTI GATC 8 cut(s) 8, 144, 253, 1002, 1078, 1164, 1303, 1419
BstMAI GTCTC 8 cut(s) 310, 332, 434, 545, 750, 1023, 1295, 1364
BstMBI GATC 8 cut(s) 5, 141, 250, 999, 1075, 1161, 1300, 1416
BstMWI GCNNNNNNNGC 3 cut(s) 68, 1499, 1554
BstNSI RCATGY 4 cut(s) 670, 1150, 1366, 1408
BstUI CGCG 3 cut(s) 62, 482, 1515
BstV1I GCAGC 3 cut(s) 142, 662, 1505
BstV2I GAAGAC 1 cut(s) 104
BstX2I RGATCY 2 cut(s) 250, 1075
BstYI RGATCY 2 cut(s) 250, 1075
Bsu15I ATCGAT 1 cut(s) 144
BsuI GTATCC 1 cut(s) 1007
BsuRI GGCC 1 cut(s) 1548
BsuTUI ATCGAT 1 cut(s) 144
BtgI CCRYGG 2 cut(s) 60, 1549
BtsCI GGATG 2 cut(s) 871, 940
BtsIMutI CAGTG 1 cut(s) 1529
CciI TCATGA 1 cut(s) 214
Cfr10I RCCGGY 1 cut(s) 1533
Cfr13I GGNCC 2 cut(s) 783, 1351
Cfr42I CCGCGG 1 cut(s) 63
ClaI ATCGAT 1 cut(s) 144
CseI GACGC 1 cut(s) 562
Csp6I GTAC 7 cut(s) 559, 595, 607, 888, 1111, 1520, 1595
CviQI GTAC 7 cut(s) 559, 595, 607, 888, 1111, 1520, 1595
DdeI CTNAG 1 cut(s) 1025
DpnI GATC 8 cut(s) 7, 143, 252, 1001, 1077, 1163, 1302, 1418
DpnII GATC 8 cut(s) 5, 141, 250, 999, 1075, 1161, 1300, 1416
DraI TTTAAA 5 cut(s) 82, 430, 814, 1084, 1452
EaeI YGGCCR 1 cut(s) 1546
Eam1104I CTCTTC 4 cut(s) 81, 1383, 1479, 1604
EarI CTCTTC 4 cut(s) 81, 1383, 1479, 1604
Ecl136II GAGCTC 1 cut(s) 901
Eco24I GRGCYC 1 cut(s) 903
Eco31I GGTCTC 2 cut(s) 332, 750
Eco32I GATATC 2 cut(s) 373, 871
Eco47I GGWCC 2 cut(s) 783, 1351
Eco53kI GAGCTC 1 cut(s) 901
Eco88I CYCGRG 3 cut(s) 27, 902, 1165
EcoICRI GAGCTC 1 cut(s) 901
EcoRI GAATTC 1 cut(s) 347
EcoRV GATATC 2 cut(s) 373, 871
EcoT38I GRGCYC 1 cut(s) 903
Esp3I CGTCTC 2 cut(s) 545, 1295
FalI AAGNNNNNCTT 2 cut(s) 678, 710
FaqI GGGAC 2 cut(s) 1160, 1445
FbaI TGATCA 1 cut(s) 1416
FblI GTMKAC 1 cut(s) 1399
Fnu4HI GCNGC 6 cut(s) 131, 651, 823, 1494, 1497, 1500
FokI GGATG 2 cut(s) 878, 947
FriOI GRGCYC 1 cut(s) 903
Fsp4HI GCNGC 6 cut(s) 131, 651, 823, 1494, 1497, 1500
FspBI CTAG 5 cut(s) 134, 444, 548, 641, 708
GluI GCNGC 6 cut(s) 131, 651, 823, 1494, 1497, 1500
HaeIII GGCC 1 cut(s) 1548
HapII CCGG 3 cut(s) 342, 1267, 1534
HgaI GACGC 1 cut(s) 562
Hin1I GRCGYC 1 cut(s) 554
HindIII AAGCTT 1 cut(s) 399
HinfI GANTC 9 cut(s) 146, 159, 165, 419, 762, 1100, 1244, 1337, 1424
HpaII CCGG 3 cut(s) 342, 1267, 1534
HphI GGTGA 4 cut(s) 103, 547, 826, 1553
Hpy166II GTNNAC 4 cut(s) 383, 607, 940, 1400
Hpy188I TCNGA 7 cut(s) 164, 353, 424, 1028, 1213, 1225, 1447
Hpy188III TCNNGA 6 cut(s) 29, 215, 686, 751, 1165, 1267
Hpy8I GTNNAC 4 cut(s) 383, 607, 940, 1400
HpyAV CCTTC 1 cut(s) 110
HpyCH4III ACNGT 4 cut(s) 1157, 1524, 1541, 1576
HpyCH4IV ACGT 4 cut(s) 324, 1044, 1088, 1396
HpyCH4V TGCA 6 cut(s) 154, 455, 504, 650, 1150, 1408
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 1499, 1554
HpyF3I CTNAG 1 cut(s) 1025
HpySE526I ACGT 4 cut(s) 324, 1044, 1088, 1396
Hsp92I GRCGYC 1 cut(s) 554
Kpn2I TCCGGA 1 cut(s) 1266
Ksp22I TGATCA 1 cut(s) 1416
KspI CCGCGG 1 cut(s) 63
Kzo9I GATC 8 cut(s) 5, 141, 250, 999, 1075, 1161, 1300, 1416
LmnI GCTCC 4 cut(s) 567, 898, 1194, 1269
LpnPI CCDG 8 cut(s) 355, 711, 819, 1104, 1280, 1475, 1547, 1572
Lsp1109I GCAGC 3 cut(s) 142, 662, 1505
LweI GCATC 1 cut(s) 304
MaeI CTAG 5 cut(s) 134, 444, 548, 641, 708
MaeII ACGT 4 cut(s) 324, 1044, 1088, 1396
MaeIII GTNAC 2 cut(s) 669, 1358
MalI GATC 8 cut(s) 7, 143, 252, 1001, 1077, 1163, 1302, 1418
MboI GATC 8 cut(s) 5, 141, 250, 999, 1075, 1161, 1300, 1416
MfeI CAATTG 1 cut(s) 654
MflI RGATCY 2 cut(s) 250, 1075
MhlI GDGCHC 2 cut(s) 547, 903
MlsI TGGCCA 1 cut(s) 1548
MluCI AATT 8 cut(s) 111, 210, 231, 272, 347, 447, 654, 852
MluNI TGGCCA 1 cut(s) 1548
MlyI GAGTC 2 cut(s) 153, 1418
MmeI TCCRAC 2 cut(s) 1236, 1248
Mox20I TGGCCA 1 cut(s) 1548
MroI TCCGGA 1 cut(s) 1266
MroXI GAANNNNTTC 2 cut(s) 276, 954
MscI TGGCCA 1 cut(s) 1548
MslI CAYNNNNRTG 4 cut(s) 602, 917, 971, 1542
Msp20I TGGCCA 1 cut(s) 1548
MspA1I CMGCKG 1 cut(s) 62
MspCI CTTAAG 1 cut(s) 283
MspI CCGG 3 cut(s) 342, 1267, 1534
MssI GTTTAAAC 1 cut(s) 430
MunI CAATTG 1 cut(s) 654
MvnI CGCG 3 cut(s) 62, 482, 1515
MwoI GCNNNNNNNGC 3 cut(s) 68, 1499, 1554
NdeII GATC 8 cut(s) 5, 141, 250, 999, 1075, 1161, 1300, 1416
NspI RCATGY 4 cut(s) 670, 1150, 1366, 1408
NspV TTCGAA 1 cut(s) 1137
OliI CACNNNNGTG 1 cut(s) 917
PaeR7I CTCGAG 3 cut(s) 27, 902, 1165
PagI TCATGA 1 cut(s) 214
PciI ACATGT 2 cut(s) 666, 1362
PdmI GAANNNNTTC 2 cut(s) 276, 954
PfeI GAWTC 7 cut(s) 146, 165, 419, 762, 1100, 1244, 1337
PkrI GCNGC 6 cut(s) 132, 652, 824, 1495, 1498, 1501
PleI GAGTC 2 cut(s) 153, 1418
PmeI GTTTAAAC 1 cut(s) 430
PpsI GAGTC 2 cut(s) 153, 1418
Ppu21I YACGTR 1 cut(s) 1397
PscI ACATGT 2 cut(s) 666, 1362
PsiI TTATAA 1 cut(s) 1439
Psp124BI GAGCTC 1 cut(s) 903
Psp1406I AACGTT 2 cut(s) 1044, 1088
PspPI GGNCC 2 cut(s) 783, 1351
PspXI VCTCGAGB 1 cut(s) 902
PsuI RGATCY 2 cut(s) 250, 1075
RsaI GTAC 7 cut(s) 560, 596, 608, 889, 1112, 1521, 1596
RsaNI GTAC 7 cut(s) 559, 595, 607, 888, 1111, 1520, 1595
RseI CAYNNNNRTG 4 cut(s) 602, 917, 971, 1542
SacI GAGCTC 1 cut(s) 903
SacII CCGCGG 1 cut(s) 63
SatI GCNGC 6 cut(s) 131, 651, 823, 1494, 1497, 1500
Sau3AI GATC 8 cut(s) 5, 141, 250, 999, 1075, 1161, 1300, 1416
Sau96I GGNCC 2 cut(s) 783, 1351
ScaI AGTACT 1 cut(s) 1596
SchI GAGTC 2 cut(s) 153, 1418
SduI GDGCHC 2 cut(s) 547, 903
SfaNI GCATC 1 cut(s) 304
Sfr274I CTCGAG 3 cut(s) 27, 902, 1165
Sfr303I CCGCGG 1 cut(s) 63
SfuI TTCGAA 1 cut(s) 1137
SgrBI CCGCGG 1 cut(s) 63
SinI GGWCC 2 cut(s) 783, 1351
SlaI CTCGAG 3 cut(s) 27, 902, 1165
SmiMI CAYNNNNRTG 4 cut(s) 602, 917, 971, 1542
SmlI CTYRAG 5 cut(s) 27, 283, 434, 902, 1165
SmoI CTYRAG 5 cut(s) 27, 283, 434, 902, 1165
Sse9I AATT 8 cut(s) 111, 210, 231, 272, 347, 447, 654, 852
SsiI CCGC 8 cut(s) 60, 62, 463, 482, 823, 1497, 1500, 1513
SspI AATATT 2 cut(s) 795, 843
SspMI CTAG 5 cut(s) 134, 444, 548, 641, 708
SstI GAGCTC 1 cut(s) 903
TaaI ACNGT 4 cut(s) 1157, 1524, 1541, 1576
TaiI ACGT 4 cut(s) 327, 1047, 1091, 1399
TaqI TCGA 6 cut(s) 28, 144, 903, 924, 1137, 1166
TaqII GACCGA 2 cut(s) 774, 1339
TasI AATT 8 cut(s) 111, 210, 231, 272, 347, 447, 654, 852
TatI WGTACW 1 cut(s) 1594
TauI GCSGC 3 cut(s) 825, 1499, 1502
TfiI GAWTC 7 cut(s) 146, 165, 419, 762, 1100, 1244, 1337
TscAI CASTG 1 cut(s) 1529
TseI GCWGC 3 cut(s) 130, 650, 1493
TspGWI ACGGA 6 cut(s) 1088, 1192, 1277, 1331, 1566, 1602
TspRI CASTG 1 cut(s) 1529
Vha464I CTTAAG 1 cut(s) 283
VpaK11BI GGWCC 2 cut(s) 783, 1351
XapI RAATTY 4 cut(s) 210, 272, 347, 447
XceI RCATGY 4 cut(s) 670, 1150, 1366, 1408
XhoI CTCGAG 3 cut(s) 27, 902, 1165
XmiI GTMKAC 1 cut(s) 1399
XmnI GAANNNNTTC 2 cut(s) 276, 954
XspI CTAG 5 cut(s) 134, 444, 548, 641, 708
ZrmI AGTACT 1 cut(s) 1596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.