Rh6BG048300

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000768
Physical Location & Seq
Forward (+)
8018364 .. 8025146
6783 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG048300.1

Sequence Viewer

Length: 840 bp
ATGTCTACCGAACACTTAGCTACCGCTGCTCGAACTTCACATCTGGATGGTAAAAGACTGACAGCAAATTATAATCCAAACATGTGGAGCTATGATTTTATTCAATCATTACAGATTGATGATCATGATCATGAAGAAGACAAAGATAATAGGTGGAAGTTGTTAGAGGAGGATGTGAAAAATATGATTGATTATGATAATGATGCGCAATCGCTAGTCACTACAATTGAATTGATTGATGACATCCAACGATTAGGTTTGGGACACCGATTTGAGGCCAGTATAACAGAAGCCCTTGATAGAGTTTTGAAGAATCTTGATCAAATAATAAACGAGGATACTCCAAGTCTCCACCTCAATGCTCTCAGCTTCAGGCTCCTTAGACAGCATGGGTTTCAAGTCTTCCAAGATGTCTTCAAAATTTTCACAGACTATGACGGCAGCTTTAAGAATTGCCTTTGCAAAGATGTCAAAGGGATGCTAAGTTTGTACGAAGCTTCATTCCTTGGTATTGAAGGAGAAACCCTCTTGGATGAGGCCCTTGCATTCACCAGCATGCATCTAAAGAACCTCAGCATATTCCATGTTACTCAAGACAAAGGTGTATTAGAGCAAGTGAGTCATGCATTGGAGATGCCATTGCACCACAGGATGCAAAGATTAGAAGCTAGATGGTATATTGAGGCATACAGTAAAAAGGCAAATGCAAATCAGGTGCTACTTGAATTTTCCAAGTTAGATTACAATGTGGTGCAACAAACATACCAAAGAGATTTTAAAGACGTTTCAAGGCTACCTTTACAAATCCTTCAAACAACCAAGATTGAAGTGGTAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

279

Amino Acids

32.44

Weight (kDa)

5.19

Isoelectric Point (pI)

38.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 28 - 210 3.5e-50 Terpene synthase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 72
Acc16I TGCGCA 1 cut(s) 207
AccI GTMKAC 1 cut(s) 5
AciI CCGC 1 cut(s) 24
AcsI RAATTY 2 cut(s) 420, 725
AcuI CTGAAG 1 cut(s) 355
AfaI GTAC 1 cut(s) 491
AfiI CCNNNNNNNGG 1 cut(s) 274
AflIII ACRYGT 1 cut(s) 81
AluBI AGCT 6 cut(s) 20, 90, 369, 444, 497, 668
AluI AGCT 6 cut(s) 20, 90, 369, 444, 497, 668
Alw26I GTCTC 1 cut(s) 353
AoxI GGCC 2 cut(s) 276, 537
ApeKI GCWGC 2 cut(s) 26, 441
ApoI RAATTY 2 cut(s) 420, 725
AspLEI GCGC 1 cut(s) 208
AspS9I GGNCC 1 cut(s) 538
AsuHPI GGTGA 1 cut(s) 541
BbsI GAAGAC 3 cut(s) 144, 394, 406
BbvCI CCTCAGC 1 cut(s) 572
BbvI GCAGC 2 cut(s) 13, 453
BccI CCATC 2 cut(s) 41, 666
BceAI ACGGC 1 cut(s) 454
BciVI GTATCC 1 cut(s) 331
BclI TGATCA 3 cut(s) 121, 127, 319
BcoDI GTCTC 1 cut(s) 353
BfaI CTAG 2 cut(s) 215, 669
BfuI GTATCC 1 cut(s) 331
BisI GCNGC 2 cut(s) 27, 442
BlsI GCNGC 2 cut(s) 28, 443
BmgT120I GGNCC 1 cut(s) 538
BmiI GGNNCC 1 cut(s) 377
BmsI GCATC 5 cut(s) 193, 468, 568, 624, 642
BpiI GAAGAC 3 cut(s) 144, 394, 406
BplI GAGNNNNNCTC 2 cut(s) 510, 542
Bpu10I CCTNAGC 1 cut(s) 572
BpuEI CTTGAG 1 cut(s) 576
BsaBI GATNNNNATC 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 505
Bsc4I CCNNNNNNNGG 1 cut(s) 274
Bse1I ACTGG 1 cut(s) 279
Bse3DI GCAATG 1 cut(s) 638
Bse8I GATNNNNATC 1 cut(s) 126
BseDI CCNNGG 1 cut(s) 505
BseGI GGATG 6 cut(s) 52, 178, 243, 483, 538, 657
BseJI GATNNNNATC 1 cut(s) 126
BseLI CCNNNNNNNGG 1 cut(s) 274
BseMI GCAATG 1 cut(s) 638
BseMII CTCAG 2 cut(s) 379, 586
BseNI ACTGG 1 cut(s) 279
BseRI GAGGAG 1 cut(s) 182
BseXI GCAGC 2 cut(s) 13, 453
BshFI GGCC 2 cut(s) 278, 539
BslFI GGGAC 1 cut(s) 276
BslI CCNNNNNNNGG 1 cut(s) 274
BsmAI GTCTC 1 cut(s) 353
BsmFI GGGAC 1 cut(s) 276
BsmI GAATGC 1 cut(s) 545
BsnI GGCC 2 cut(s) 278, 539
Bsp143I GATC 3 cut(s) 121, 127, 319
BspACI CCGC 1 cut(s) 24
BspANI GGCC 2 cut(s) 278, 539
BspCNI CTCAG 2 cut(s) 378, 585
BspHI TCATGA 2 cut(s) 124, 130
BspLI GGNNCC 1 cut(s) 377
BsrDI GCAATG 1 cut(s) 638
BsrI ACTGG 1 cut(s) 279
BssECI CCNNGG 1 cut(s) 505
BssMI GATC 3 cut(s) 121, 127, 319
BssT1I CCWWGG 1 cut(s) 505
Bst4CI ACNGT 1 cut(s) 692
BstC8I GCNNGC 1 cut(s) 557
BstDEI CTNAG 5 cut(s) 16, 365, 380, 482, 572
BstF5I GGATG 6 cut(s) 52, 178, 243, 483, 538, 657
BstHHI GCGC 1 cut(s) 208
BstKTI GATC 3 cut(s) 124, 130, 322
BstMAI GTCTC 1 cut(s) 353
BstMBI GATC 3 cut(s) 121, 127, 319
BstMWI GCNNNNNNNGC 1 cut(s) 26
BstNSI RCATGY 2 cut(s) 85, 559
BstV1I GCAGC 2 cut(s) 13, 453
BstV2I GAAGAC 3 cut(s) 144, 394, 406
BstXI CCANNNNNNTGG 1 cut(s) 84
BsuI GTATCC 1 cut(s) 331
BsuRI GGCC 2 cut(s) 278, 539
BtsCI GGATG 6 cut(s) 52, 178, 243, 483, 538, 657
Cac8I GCNNGC 1 cut(s) 557
CciI TCATGA 2 cut(s) 124, 130
CfoI GCGC 1 cut(s) 208
Cfr13I GGNCC 1 cut(s) 538
Csp6I GTAC 1 cut(s) 490
CviAII CATG 7 cut(s) 82, 125, 131, 389, 556, 584, 623
CviQI GTAC 1 cut(s) 490
DdeI CTNAG 5 cut(s) 16, 365, 380, 482, 572
DpnI GATC 3 cut(s) 123, 129, 321
DpnII GATC 3 cut(s) 121, 127, 319
DraI TTTAAA 1 cut(s) 778
Eco130I CCWWGG 1 cut(s) 505
Eco57I CTGAAG 1 cut(s) 355
EcoO109I RGGNCCY 1 cut(s) 538
EcoT14I CCWWGG 1 cut(s) 505
EcoT22I ATGCAT 2 cut(s) 561, 628
ErhI CCWWGG 1 cut(s) 505
FaeI CATG 7 cut(s) 85, 128, 134, 392, 559, 587, 626
FalI AAGNNNNNCTT 2 cut(s) 781, 813
FaqI GGGAC 1 cut(s) 276
FatI CATG 7 cut(s) 81, 124, 130, 388, 555, 583, 622
FbaI TGATCA 3 cut(s) 121, 127, 319
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 2 cut(s) 27, 442
FokI GGATG 6 cut(s) 59, 185, 230, 490, 545, 664
Fsp4HI GCNGC 2 cut(s) 27, 442
FspBI CTAG 2 cut(s) 215, 669
FspI TGCGCA 1 cut(s) 207
GlaI GCGC 1 cut(s) 207
GluI GCNGC 2 cut(s) 27, 442
HaeIII GGCC 2 cut(s) 278, 539
HhaI GCGC 1 cut(s) 208
Hin1II CATG 7 cut(s) 85, 128, 134, 392, 559, 587, 626
Hin6I GCGC 1 cut(s) 206
HinP1I GCGC 1 cut(s) 206
HindIII AAGCTT 1 cut(s) 495
HinfI GANTC 2 cut(s) 313, 619
HphI GGTGA 1 cut(s) 541
Hpy166II GTNNAC 2 cut(s) 6, 835
Hpy188III TCNNGA 5 cut(s) 44, 125, 131, 317, 593
Hpy8I GTNNAC 2 cut(s) 6, 835
HpyAV CCTTC 2 cut(s) 509, 818
HpyCH4III ACNGT 1 cut(s) 692
HpyCH4IV ACGT 1 cut(s) 783
HpyCH4V TGCA 8 cut(s) 462, 545, 559, 626, 643, 655, 707, 754
HpyF10VI GCNNNNNNNGC 1 cut(s) 26
HpyF3I CTNAG 5 cut(s) 16, 365, 380, 482, 572
HpySE526I ACGT 1 cut(s) 783
Hsp92II CATG 7 cut(s) 85, 128, 134, 392, 559, 587, 626
HspAI GCGC 1 cut(s) 206
Ksp22I TGATCA 3 cut(s) 121, 127, 319
Kzo9I GATC 3 cut(s) 121, 127, 319
LmnI GCTCC 2 cut(s) 87, 381
LpnPI CCDG 6 cut(s) 29, 292, 358, 565, 634, 698
Lsp1109I GCAGC 2 cut(s) 13, 453
LweI GCATC 5 cut(s) 193, 468, 568, 624, 642
MaeI CTAG 2 cut(s) 215, 669
MaeII ACGT 1 cut(s) 783
MaeIII GTNAC 2 cut(s) 217, 586
MalI GATC 3 cut(s) 123, 129, 321
MboI GATC 3 cut(s) 121, 127, 319
MboII GAAGA 5 cut(s) 146, 149, 322, 394, 406
MfeI CAATTG 1 cut(s) 225
MluCI AATT 6 cut(s) 67, 225, 230, 420, 451, 725
MlyI GAGTC 1 cut(s) 628
MmeI TCCRAC 1 cut(s) 271
MnlI CCTC 9 cut(s) 160, 163, 268, 328, 365, 529, 536, 581, 676
Mph1103I ATGCAT 2 cut(s) 561, 628
MseI TTAA 2 cut(s) 447, 777
MslI CAYNNNNRTG 4 cut(s) 45, 129, 357, 554
MspA1I CMGCKG 1 cut(s) 26
MunI CAATTG 1 cut(s) 225
Mva1269I GAATGC 1 cut(s) 545
MwoI GCNNNNNNNGC 1 cut(s) 26
NdeII GATC 3 cut(s) 121, 127, 319
NlaIII CATG 7 cut(s) 85, 128, 134, 392, 559, 587, 626
NlaIV GGNNCC 1 cut(s) 377
NmuCI GTSAC 1 cut(s) 217
NsbI TGCGCA 1 cut(s) 207
NsiI ATGCAT 2 cut(s) 561, 628
NspI RCATGY 2 cut(s) 85, 559
PaeI GCATGC 1 cut(s) 559
PagI TCATGA 2 cut(s) 124, 130
PciI ACATGT 1 cut(s) 81
PctI GAATGC 1 cut(s) 545
PfeI GAWTC 1 cut(s) 313
PkrI GCNGC 2 cut(s) 28, 443
PleI GAGTC 1 cut(s) 627
PpsI GAGTC 1 cut(s) 627
PscI ACATGT 1 cut(s) 81
PsiI TTATAA 1 cut(s) 72
PspN4I GGNNCC 1 cut(s) 377
PspPI GGNCC 1 cut(s) 538
RsaI GTAC 1 cut(s) 491
RsaNI GTAC 1 cut(s) 490
RseI CAYNNNNRTG 4 cut(s) 45, 129, 357, 554
SaqAI TTAA 2 cut(s) 447, 777
SatI GCNGC 2 cut(s) 27, 442
Sau3AI GATC 3 cut(s) 121, 127, 319
Sau96I GGNCC 1 cut(s) 538
SchI GAGTC 1 cut(s) 628
SfaNI GCATC 5 cut(s) 193, 468, 568, 624, 642
SmiMI CAYNNNNRTG 4 cut(s) 45, 129, 357, 554
SmlI CTYRAG 1 cut(s) 591
SmoI CTYRAG 1 cut(s) 591
SphI GCATGC 1 cut(s) 559
Sse9I AATT 6 cut(s) 67, 225, 230, 420, 451, 725
SsiI CCGC 1 cut(s) 24
SspMI CTAG 2 cut(s) 215, 669
StyI CCWWGG 1 cut(s) 505
TaaI ACNGT 1 cut(s) 692
TaiI ACGT 1 cut(s) 786
TaqI TCGA 1 cut(s) 31
TasI AATT 6 cut(s) 67, 225, 230, 420, 451, 725
TfiI GAWTC 1 cut(s) 313
Tru1I TTAA 2 cut(s) 447, 777
Tru9I TTAA 2 cut(s) 447, 777
TseFI GTSAC 1 cut(s) 217
TseI GCWGC 2 cut(s) 26, 441
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 2 cut(s) 147, 489
XapI RAATTY 2 cut(s) 420, 725
XceI RCATGY 2 cut(s) 85, 559
XcmI CCANNNNNNNNNTGG 1 cut(s) 826
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 2 cut(s) 215, 669
Zsp2I ATGCAT 2 cut(s) 561, 628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.