MD17G1090000.v1.1

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0000768
Physical Location & Seq
Forward (+)
7421247 .. 7423687
2441 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1090000.v1.1.491

Sequence Viewer

Length: 930 bp
ATGCTTAGTCTATACGAAGCTTCATATTTTTCTTTCGAGGGAGAGAGCCTCTTGGATGAGGGCCTTGCATTCTCAACCATTTATCTCAAGAACCTCAGTGGAGCCAATGTTACAAAAGGACTAGCAGAACAAGCATACAGTAAAAGGCCAGATGCAAATCAAGTGCTACTTGAAATTGCGAAACGAGATTTTAACAAGGTGCAATGTACACTCCAAAGGGATCTTAAAGAAGTATCAAGGTGGTGGGTGGATATGGGGTTAGCAAAAAAGTTGAGCTTCATCAGAGACAGATTGATGGAGTGCTTTTTTTGGTCGGTTGGAATCGTCTCTGAACCTCAAAAGCGTCATGTCAGGAAAGGGTTGACAAAAGTGGCTGCTCTATGGGCTGATTTGTGCAAAACATTTCTTAAGGAGACAACATGGCGCTATAACAAGCAGATACCCACATTTGAAGAATATATCGACACTGCATGGATATCAGTCTCAGGAGTGGTGTTCTTAGTTCATACATATTTTCTCCTCACCCCAAAGATCACAAAGCAAGCACTTGAATGCTTAGAAAATCACCACAATCTCTTGCGTTGGCCATCTCTCATTTTCCGGCTTTGCAATGATTTGAGTACTTTTGAAGCAGAAGTGCAGAGAGGAGAAACTGCGAACTCAATCTCATGCATGACGCGTGGCAGTATGAATGTTTCTGAGGAATTTGCGCGCGAATATATAAGTAATATGGTTCAAAACAGTTGGAAGAAGCTAAACAAAGATGGAGCTTCTGGTTCTCCATTTACAGAGAAATTTGTCCAAGCAGCAAGAAACCTTGCTCGGATTTCCCAATGCGTATACCAATATGGTGATTGGCATGGAGCACCAGACACAAGAGCAAAGAATCGAATCCTATCAGTTATTATCGATCCCATTAAAGGACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

310

Amino Acids

35.47

Weight (kDa)

8.85

Isoelectric Point (pI)

32.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 1 - 35 6.4e-07 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 84 - 127 3.9e-11 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 114 - 251 6e-32 Terpene synthase family 2, C-terminal metal binding
Terpene_synth_C PF03936 127 - 251 1.9e-36 Terpene synthase family, metal binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 840
AccII CGCG 3 cut(s) 679, 712, 714
AclWI GGATC 2 cut(s) 228, 905
AcoI YGGCCR 1 cut(s) 584
AcsI RAATTY 2 cut(s) 704, 794
AfaI GTAC 2 cut(s) 208, 622
AfiI CCNNNNNNNGG 1 cut(s) 920
AflII CTTAAG 1 cut(s) 407
AflIII ACRYGT 1 cut(s) 677
AgsI TTSAA 5 cut(s) 173, 452, 551, 629, 737
AluBI AGCT 4 cut(s) 20, 276, 754, 770
AluI AGCT 4 cut(s) 20, 276, 754, 770
Alw21I GWGCWC 1 cut(s) 868
Alw26I GTCTC 4 cut(s) 279, 331, 407, 487
AlwI GGATC 2 cut(s) 228, 905
AoxI GGCC 3 cut(s) 61, 146, 584
ApeKI GCWGC 2 cut(s) 374, 806
ApoI RAATTY 2 cut(s) 704, 794
AspLEI GCGC 3 cut(s) 426, 712, 714
AspS9I GGNCC 2 cut(s) 61, 923
AsuHPI GGTGA 3 cut(s) 514, 557, 863
AvaII GGWCC 1 cut(s) 923
BalI TGGCCA 1 cut(s) 586
Bbv12I GWGCWC 1 cut(s) 868
BbvI GCAGC 2 cut(s) 361, 818
BccI CCATC 3 cut(s) 289, 595, 758
BcoDI GTCTC 4 cut(s) 279, 331, 407, 487
BfaI CTAG 1 cut(s) 122
BfoI RGCGCY 1 cut(s) 427
BfrI CTTAAG 1 cut(s) 407
BisI GCNGC 2 cut(s) 375, 807
BlsI GCNGC 2 cut(s) 376, 808
BmcAI AGTACT 1 cut(s) 622
Bme18I GGWCC 1 cut(s) 923
BmgT120I GGNCC 2 cut(s) 61, 923
BmiI GGNNCC 1 cut(s) 103
BmsI GCATC 1 cut(s) 142
BplI GAGNNNNNCTC 2 cut(s) 33, 65
BpuEI CTTGAG 1 cut(s) 71
Bsa29I ATCGAT 1 cut(s) 909
BsaBI GATNNNNATC 1 cut(s) 156
BsaXI ACNNNNNCTCC 2 cut(s) 93, 123
Bsc4I CCNNNNNNNGG 1 cut(s) 920
Bse3DI GCAATG 2 cut(s) 209, 616
Bse8I GATNNNNATC 1 cut(s) 156
BseCI ATCGAT 1 cut(s) 909
BseGI GGATG 1 cut(s) 61
BseJI GATNNNNATC 1 cut(s) 156
BseLI CCNNNNNNNGG 1 cut(s) 920
BseMI GCAATG 2 cut(s) 209, 616
BseMII CTCAG 3 cut(s) 109, 498, 690
BsePI GCGCGC 1 cut(s) 710
BseRI GAGGAG 2 cut(s) 509, 660
BseXI GCAGC 2 cut(s) 361, 818
BsgI GTGCAG 1 cut(s) 659
Bsh1236I CGCG 3 cut(s) 679, 712, 714
BshFI GGCC 3 cut(s) 63, 148, 586
BshVI ATCGAT 1 cut(s) 909
BsiHKAI GWGCWC 1 cut(s) 868
BsiSI CCGG 1 cut(s) 601
BslI CCNNNNNNNGG 1 cut(s) 920
BsmAI GTCTC 4 cut(s) 279, 331, 407, 487
BsmBI CGTCTC 1 cut(s) 331
BsmI GAATGC 2 cut(s) 68, 557
BsnI GGCC 3 cut(s) 63, 148, 586
Bsp1286I GDGCHC 1 cut(s) 868
Bsp1407I TGTACA 1 cut(s) 206
Bsp143I GATC 3 cut(s) 220, 531, 910
BspANI GGCC 3 cut(s) 63, 148, 586
BspCNI CTCAG 3 cut(s) 108, 497, 691
BspDI ATCGAT 1 cut(s) 909
BspFNI CGCG 3 cut(s) 679, 712, 714
BspLI GGNNCC 1 cut(s) 103
BspPI GGATC 2 cut(s) 228, 905
BspTI CTTAAG 1 cut(s) 407
BsrDI GCAATG 2 cut(s) 209, 616
BsrGI TGTACA 1 cut(s) 206
BssHII GCGCGC 1 cut(s) 710
BssMI GATC 3 cut(s) 220, 531, 910
BssNAI GTATAC 1 cut(s) 841
Bst1107I GTATAC 1 cut(s) 841
Bst4CI ACNGT 2 cut(s) 140, 743
BstAFI CTTAAG 1 cut(s) 407
BstAUI TGTACA 1 cut(s) 206
BstC8I GCNNGC 2 cut(s) 543, 712
BstDEI CTNAG 6 cut(s) 5, 95, 484, 499, 556, 699
BstF5I GGATG 1 cut(s) 61
BstFNI CGCG 3 cut(s) 679, 712, 714
BstH2I RGCGCY 1 cut(s) 427
BstHHI GCGC 3 cut(s) 426, 712, 714
BstKTI GATC 3 cut(s) 223, 534, 913
BstMAI GTCTC 4 cut(s) 279, 331, 407, 487
BstMBI GATC 3 cut(s) 220, 531, 910
BstMWI GCNNNNNNNGC 2 cut(s) 131, 383
BstUI CGCG 3 cut(s) 679, 712, 714
BstV1I GCAGC 2 cut(s) 361, 818
BstX2I RGATCY 1 cut(s) 220
BstYI RGATCY 1 cut(s) 220
BstZ17I GTATAC 1 cut(s) 841
Bsu15I ATCGAT 1 cut(s) 909
BsuRI GGCC 3 cut(s) 63, 148, 586
BsuTUI ATCGAT 1 cut(s) 909
BtsCI GGATG 1 cut(s) 61
BtsI GCAGTG 1 cut(s) 465
BtsIMutI CAGTG 2 cut(s) 103, 465
Cac8I GCNNGC 2 cut(s) 543, 712
CfoI GCGC 3 cut(s) 426, 712, 714
Cfr13I GGNCC 2 cut(s) 61, 923
ClaI ATCGAT 1 cut(s) 909
CseI GACGC 2 cut(s) 332, 685
Csp6I GTAC 2 cut(s) 207, 621
CviAII CATG 6 cut(s) 347, 420, 471, 669, 673, 860
CviQI GTAC 2 cut(s) 207, 621
DdeI CTNAG 6 cut(s) 5, 95, 484, 499, 556, 699
DpnI GATC 3 cut(s) 222, 533, 912
DpnII GATC 3 cut(s) 220, 531, 910
EaeI YGGCCR 1 cut(s) 584
Eco32I GATATC 1 cut(s) 477
Eco47I GGWCC 1 cut(s) 923
EcoO109I RGGNCCY 1 cut(s) 61
EcoRV GATATC 1 cut(s) 477
EcoT22I ATGCAT 1 cut(s) 674
Esp3I CGTCTC 1 cut(s) 331
FaeI CATG 6 cut(s) 350, 423, 474, 672, 676, 863
FalI AAGNNNNNCTT 4 cut(s) 153, 185, 260, 292
FatI CATG 6 cut(s) 346, 419, 470, 668, 672, 859
FblI GTMKAC 1 cut(s) 840
Fnu4HI GCNGC 2 cut(s) 375, 807
FokI GGATG 1 cut(s) 68
Fsp4HI GCNGC 2 cut(s) 375, 807
FspBI CTAG 1 cut(s) 122
GlaI GCGC 3 cut(s) 425, 711, 713
GluI GCNGC 2 cut(s) 375, 807
HaeII RGCGCY 1 cut(s) 427
HaeIII GGCC 3 cut(s) 63, 148, 586
HapII CCGG 1 cut(s) 601
HgaI GACGC 2 cut(s) 332, 685
HhaI GCGC 3 cut(s) 426, 712, 714
Hin1II CATG 6 cut(s) 350, 423, 474, 672, 676, 863
Hin6I GCGC 3 cut(s) 424, 710, 712
HinP1I GCGC 3 cut(s) 424, 710, 712
HincII GTYRAC 1 cut(s) 363
HindII GTYRAC 1 cut(s) 363
HindIII AAGCTT 1 cut(s) 18
HinfI GANTC 3 cut(s) 321, 886, 891
HpaII CCGG 1 cut(s) 601
HphI GGTGA 3 cut(s) 514, 557, 863
Hpy166II GTNNAC 3 cut(s) 209, 363, 841
Hpy188I TCNGA 4 cut(s) 284, 331, 700, 825
Hpy188III TCNNGA 3 cut(s) 88, 352, 486
Hpy8I GTNNAC 3 cut(s) 209, 363, 841
HpyCH4III ACNGT 2 cut(s) 140, 743
HpyCH4V TGCA 8 cut(s) 68, 155, 202, 396, 470, 609, 640, 672
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 383
HpyF3I CTNAG 6 cut(s) 5, 95, 484, 499, 556, 699
Hsp92II CATG 6 cut(s) 350, 423, 474, 672, 676, 863
HspAI GCGC 3 cut(s) 424, 710, 712
Kzo9I GATC 3 cut(s) 220, 531, 910
LmnI GCTCC 3 cut(s) 101, 767, 863
LpnPI CCDG 6 cut(s) 162, 337, 471, 614, 759, 882
Lsp1109I GCAGC 2 cut(s) 361, 818
LweI GCATC 1 cut(s) 142
MaeI CTAG 1 cut(s) 122
MaeIII GTNAC 1 cut(s) 109
MalI GATC 3 cut(s) 222, 533, 912
MboI GATC 3 cut(s) 220, 531, 910
MboII GAAGA 2 cut(s) 464, 760
MflI RGATCY 1 cut(s) 220
MhlI GDGCHC 1 cut(s) 868
MlsI TGGCCA 1 cut(s) 586
MluCI AATT 3 cut(s) 174, 704, 794
MluI ACGCGT 1 cut(s) 677
MluNI TGGCCA 1 cut(s) 586
MmeI TCCRAC 2 cut(s) 298, 725
MnlI CCTC 8 cut(s) 31, 52, 59, 104, 345, 530, 638, 694
Mox20I TGGCCA 1 cut(s) 586
Mph1103I ATGCAT 1 cut(s) 674
MscI TGGCCA 1 cut(s) 586
MseI TTAA 4 cut(s) 192, 225, 408, 918
MslI CAYNNNNRTG 1 cut(s) 550
Msp20I TGGCCA 1 cut(s) 586
MspCI CTTAAG 1 cut(s) 407
MspI CCGG 1 cut(s) 601
Mva1269I GAATGC 2 cut(s) 68, 557
MvnI CGCG 3 cut(s) 679, 712, 714
MwoI GCNNNNNNNGC 2 cut(s) 131, 383
NdeII GATC 3 cut(s) 220, 531, 910
NlaIII CATG 6 cut(s) 350, 423, 474, 672, 676, 863
NlaIV GGNNCC 1 cut(s) 103
NsiI ATGCAT 1 cut(s) 674
PauI GCGCGC 1 cut(s) 710
PctI GAATGC 2 cut(s) 68, 557
PfeI GAWTC 3 cut(s) 321, 886, 891
PkrI GCNGC 2 cut(s) 376, 808
PspN4I GGNNCC 1 cut(s) 103
PspPI GGNCC 2 cut(s) 61, 923
PsuI RGATCY 1 cut(s) 220
PteI GCGCGC 1 cut(s) 710
RsaI GTAC 2 cut(s) 208, 622
RsaNI GTAC 2 cut(s) 207, 621
RseI CAYNNNNRTG 1 cut(s) 550
SaqAI TTAA 4 cut(s) 192, 225, 408, 918
SatI GCNGC 2 cut(s) 375, 807
Sau3AI GATC 3 cut(s) 220, 531, 910
Sau96I GGNCC 2 cut(s) 61, 923
ScaI AGTACT 1 cut(s) 622
SduI GDGCHC 1 cut(s) 868
SetI ASST 9 cut(s) 22, 96, 201, 242, 278, 337, 756, 772, 819
SfaNI GCATC 1 cut(s) 142
SinI GGWCC 1 cut(s) 923
SmiMI CAYNNNNRTG 1 cut(s) 550
SmlI CTYRAG 2 cut(s) 86, 407
SmoI CTYRAG 2 cut(s) 86, 407
Sse9I AATT 3 cut(s) 174, 704, 794
SspMI CTAG 1 cut(s) 122
TaaI ACNGT 2 cut(s) 140, 743
TaqI TCGA 4 cut(s) 36, 462, 889, 909
TasI AATT 3 cut(s) 174, 704, 794
TatI WGTACW 2 cut(s) 206, 620
TfiI GAWTC 3 cut(s) 321, 886, 891
Tru1I TTAA 4 cut(s) 192, 225, 408, 918
Tru9I TTAA 4 cut(s) 192, 225, 408, 918
TscAI CASTG 2 cut(s) 103, 472
TseI GCWGC 2 cut(s) 374, 806
TspDTI ATGAA 4 cut(s) 12, 268, 494, 704
TspRI CASTG 2 cut(s) 103, 472
Vha464I CTTAAG 1 cut(s) 407
VpaK11BI GGWCC 1 cut(s) 923
XapI RAATTY 2 cut(s) 704, 794
XmiI GTMKAC 1 cut(s) 840
XspI CTAG 1 cut(s) 122
ZrmI AGTACT 1 cut(s) 622
Zsp2I ATGCAT 1 cut(s) 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.