Rw3G023610

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000768
Physical Location & Seq
Reverse (-)
29655277 .. 29659812
4536 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G023610.1

Sequence Viewer

Length: 1701 bp
ATGTCTACCCAATGCTTAGCGAGCAGCGGTAGCCCTGCTGCTCAAACTTCACATTTGGATGTTAAAAGACCGGCAGCAAATTACAAGCCAAGTACTTGGAGTCATGATTTTCTTCAGTCTTTACAGATTGATGATCGTAATCATGAAGAAGTATACAAAGATAATAGGTGGAAGCTGATCGAGGAGAATCTGAAAAATATTATTGATGTAGAGTCACTAGAGACTACACTTGAATTGATTGATGACATCCAACGATTAGGTTTGGGACATCGATTCGAGGCCAGTATAACAGAAGCCCTTGATAAAGTTTTGAAGAATCTTGACCAAATAACAGACAAGGATACTCCAAGTCTGCACTTCACTGCTCTCAACTTCCGACTCCTTAGACAGCATGGGTTTCAAGTCTCCCAAGATGTTTTCAAAATTTTCACAGACTGCGACGGCAGCTTCAAGGATTGCCTTTGCAAAGATGTCAAAGGAATGATGAGTCTGTGCGAAGCTTCATACCTTGGTATTGAAGGAGAAACCCTCTTGGATGAGGCCCTTGCATTCACCAGCATGCACCTAAAGAACCTCAGCAGATTGCATGTTACTCAAGGCAAAGGTGTATTAGAGCAAGTGAGTCATGCATTGGAGATGCCATTGCACCACAGAATGCAAAGACTAGAAGCTAGATGGTATATTGAGGCATACAATAAAAAGGCAGATGCAAATCAGGTGCTACTTGAATTTGCCAAGCTAGATTACAATGTGGTGCAACAAACATACCAAAGAGATCTTAAAGACATTTCAAGGTGGTGGAAGGATACGGGGTTAGCAAAGAAGTTGTCCTTCAACAAAGACAGACTGATAGAGTTGTTCTTTTGGTCAGTTGGTATAGCGTTTGAACCTCAACTCAGCAATCTTAGAAAAGATATAACTAAAGTCGGTGCTCTAATAACGACAATTGATGATGTCTATGATCTTTATGGTACTTTGGATGAGCTAGAACTATTCACATATGTTGTTGAAAGATGGGATGTGAATGCTGTGGAAATTCTTTCAGACTACCAGCTGAAGCTCTGTTTCCTTGCTCTCTATAACACTGTGAATGAAATGATTTATGAAACTTTGAAGGAGCAAGGAGTAAACGTCCTTCCTTACTGGGTAGATATGTGCAAAGCTTGGTTAATGGAGGCAAAGTGGCGTCACAACAAGTACACACCTACATTTGAAGAATATCTTGCCAATGCATGGATATCAGCGTTCGGAGTGGTCATTCTAGTCCACACCTACTTTCTACTGAATCAAAATATCTCAGATGAAGCACTTAAATGCTTAGAGAATCACCATGATCTCTTGCGTTGGCCGTCTCTTATTTTTCGGCTCTCAAATGATTTGGCTACTTCAAAGGCAGAACTAGAGAGAGGAGAAACTGCAACTTCAATATCCTGCATCAGACGTGATGGTGTTGTTTCTGATGAGGAATCTACTCGCAAATATATTAGTAATTTGATTGAGAATAGTTGGAAGAAGATGAACAAAGATGGACTACTATTTGGGGCTAGTAGAGCTTCTTCTCCATTCACAAAGGAATTTGTAGCAGCAGCAACGAACCTTGCTCGAATTGCCCAATGCATTTACCAATATGGAGACGGGATTGGTGCCCGGGACAAAAGAGTAAAGAACCGGATCCTAGCAGTGATTGTACAACCCGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

566

Amino Acids

65.12

Weight (kDa)

5.68

Isoelectric Point (pI)

37.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 33 - 211 4.6e-48 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 268 - 505 2.9e-78 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 308 - 505 2.6e-50 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1643
AccB7I CCANNNNNTGG 1 cut(s) 1233
AccI GTMKAC 2 cut(s) 5, 153
AciI CCGC 1 cut(s) 27
AclWI GGATC 2 cut(s) 1666, 1679
AcoI YGGCCR 1 cut(s) 1346
AcsI RAATTY 4 cut(s) 423, 728, 1035, 1574
AcuI CTGAAG 2 cut(s) 98, 1076
AcyI GRCGYC 1 cut(s) 1186
AfaI GTAC 4 cut(s) 94, 973, 1199, 1689
AfiI CCNNNNNNNGG 1 cut(s) 1233
AjiI CACGTC 1 cut(s) 1442
Alw21I GWGCWC 1 cut(s) 934
Alw26I GTCTC 4 cut(s) 215, 409, 1356, 1626
AlwI GGATC 2 cut(s) 1666, 1679
Ama87I CYCGRG 1 cut(s) 1647
AoxI GGCC 3 cut(s) 279, 540, 1346
ApeKI GCWGC 6 cut(s) 24, 38, 74, 444, 1583, 1586
ApoI RAATTY 4 cut(s) 423, 728, 1035, 1574
ArsI GACNNNNNNTTYG 2 cut(s) 812, 844
AspS9I GGNCC 1 cut(s) 541
AsuC2I CCSGG 2 cut(s) 1648, 1649
AsuHPI GGTGA 2 cut(s) 544, 1319
AvaI CYCGRG 1 cut(s) 1647
BaeGI GKGCMC 1 cut(s) 1648
BamHI GGATCC 1 cut(s) 1671
BanI GGYRCC 1 cut(s) 1643
BarI GAAGNNNNNNTAC 4 cut(s) 1119, 1151, 1540, 1572
Bbv12I GWGCWC 1 cut(s) 934
BbvCI CCTCAGC 1 cut(s) 575
BbvI GCAGC 6 cut(s) 25, 36, 86, 456, 1595, 1598
BccI CCATC 4 cut(s) 669, 1008, 1439, 1520
BceAI ACGGC 2 cut(s) 457, 1333
BciVI GTATCC 2 cut(s) 334, 799
BcnI CCSGG 2 cut(s) 1648, 1649
BcoDI GTCTC 4 cut(s) 215, 409, 1356, 1626
BfaI CTAG 9 cut(s) 218, 665, 672, 740, 986, 1262, 1400, 1545, 1676
BfuI GTATCC 2 cut(s) 334, 799
BglII AGATCT 1 cut(s) 775
BisI GCNGC 6 cut(s) 25, 39, 75, 445, 1584, 1587
BlpI GCTNAGC 1 cut(s) 16
BlsI GCNGC 6 cut(s) 26, 40, 76, 446, 1585, 1588
BmcAI AGTACT 1 cut(s) 94
Bme1390I CCNGG 2 cut(s) 1648, 1649
BmeT110I CYCGRG 1 cut(s) 1647
BmgBI CACGTC 1 cut(s) 1442
BmgT120I GGNCC 1 cut(s) 541
BmiI GGNNCC 2 cut(s) 1645, 1673
BmrFI CCNGG 2 cut(s) 1648, 1649
BmrI ACTGGG 1 cut(s) 1153
BmsI GCATC 3 cut(s) 627, 697, 1443
BmuI ACTGGG 1 cut(s) 1153
BplI GAGNNNNNCTC 2 cut(s) 513, 545
Bpu10I CCTNAGC 1 cut(s) 575
Bpu1102I GCTNAGC 1 cut(s) 16
BpuEI CTTGAG 1 cut(s) 579
BpuMI CCSGG 2 cut(s) 1648, 1649
Bsa29I ATCGAT 1 cut(s) 271
BsaBI GATNNNNATC 2 cut(s) 138, 711
BsaHI GRCGYC 1 cut(s) 1186
BsaJI CCNNGG 2 cut(s) 508, 1647
BsaWI WCCGGW 1 cut(s) 1668
BsaXI ACNNNNNCTCC 4 cut(s) 1116, 1146, 1166, 1196
Bsc4I CCNNNNNNNGG 1 cut(s) 1233
Bse118I RCCGGY 1 cut(s) 70
Bse1I ACTGG 2 cut(s) 282, 1148
Bse3DI GCAATG 1 cut(s) 641
Bse8I GATNNNNATC 2 cut(s) 138, 711
BseCI ATCGAT 1 cut(s) 271
BseDI CCNNGG 2 cut(s) 508, 1647
BseGI GGATG 5 cut(s) 64, 246, 541, 985, 1024
BseJI GATNNNNATC 2 cut(s) 138, 711
BseLI CCNNNNNNNGG 1 cut(s) 1233
BseMI GCAATG 1 cut(s) 641
BseMII CTCAG 3 cut(s) 589, 910, 1311
BseNI ACTGG 2 cut(s) 282, 1148
BseRI GAGGAG 2 cut(s) 197, 1422
BseSI GKGCMC 1 cut(s) 1648
BseXI GCAGC 6 cut(s) 25, 36, 86, 456, 1595, 1598
BsgI GTGCAG 1 cut(s) 338
BshFI GGCC 3 cut(s) 281, 542, 1348
BshNI GGYRCC 1 cut(s) 1643
BshVI ATCGAT 1 cut(s) 271
BsiHKAI GWGCWC 1 cut(s) 934
BsiHKCI CYCGRG 1 cut(s) 1647
BsiSI CCGG 3 cut(s) 71, 1648, 1669
BslFI GGGAC 2 cut(s) 279, 1664
BslI CCNNNNNNNGG 1 cut(s) 1233
BsmAI GTCTC 4 cut(s) 215, 409, 1356, 1626
BsmBI CGTCTC 2 cut(s) 1356, 1626
BsmFI GGGAC 2 cut(s) 279, 1664
BsmI GAATGC 3 cut(s) 548, 660, 1030
BsnI GGCC 3 cut(s) 281, 542, 1348
BsoBI CYCGRG 1 cut(s) 1647
Bsp1286I GDGCHC 2 cut(s) 934, 1648
Bsp1407I TGTACA 1 cut(s) 1687
Bsp143I GATC 6 cut(s) 133, 177, 775, 961, 1333, 1671
Bsp1720I GCTNAGC 1 cut(s) 16
BspACI CCGC 1 cut(s) 27
BspANI GGCC 3 cut(s) 281, 542, 1348
BspCNI CTCAG 3 cut(s) 588, 909, 1310
BspDI ATCGAT 1 cut(s) 271
BspHI TCATGA 2 cut(s) 103, 142
BspLI GGNNCC 2 cut(s) 1645, 1673
BspPI GGATC 2 cut(s) 1666, 1679
BspT107I GGYRCC 1 cut(s) 1643
BsrDI GCAATG 1 cut(s) 641
BsrFI RCCGGY 1 cut(s) 70
BsrGI TGTACA 1 cut(s) 1687
BsrI ACTGG 2 cut(s) 282, 1148
BssAI RCCGGY 1 cut(s) 70
BssECI CCNNGG 2 cut(s) 508, 1647
BssMI GATC 6 cut(s) 133, 177, 775, 961, 1333, 1671
BssNAI GTATAC 1 cut(s) 154
BssNI GRCGYC 1 cut(s) 1186
BssT1I CCWWGG 1 cut(s) 508
Bst1107I GTATAC 1 cut(s) 154
Bst4CI ACNGT 1 cut(s) 1087
BstACI GRCGYC 1 cut(s) 1186
BstAUI TGTACA 1 cut(s) 1687
BstC8I GCNNGC 2 cut(s) 22, 560
BstDEI CTNAG 7 cut(s) 16, 383, 575, 896, 905, 1297, 1318
BstF5I GGATG 5 cut(s) 64, 246, 541, 985, 1024
BstKTI GATC 6 cut(s) 136, 180, 778, 964, 1336, 1674
BstMAI GTCTC 4 cut(s) 215, 409, 1356, 1626
BstMBI GATC 6 cut(s) 133, 177, 775, 961, 1333, 1671
BstMWI GCNNNNNNNGC 5 cut(s) 21, 30, 444, 1550, 1607
BstNSI RCATGY 2 cut(s) 562, 590
BstSCI CCNGG 2 cut(s) 1646, 1647
BstSLI GKGCMC 1 cut(s) 1648
BstV1I GCAGC 6 cut(s) 25, 36, 86, 456, 1595, 1598
BstX2I RGATCY 2 cut(s) 775, 1671
BstXI CCANNNNNNTGG 1 cut(s) 96
BstYI RGATCY 2 cut(s) 775, 1671
BstZ17I GTATAC 1 cut(s) 154
Bsu15I ATCGAT 1 cut(s) 271
BsuI GTATCC 2 cut(s) 334, 799
BsuRI GGCC 3 cut(s) 281, 542, 1348
BsuTUI ATCGAT 1 cut(s) 271
BtrI CACGTC 1 cut(s) 1442
BtsCI GGATG 5 cut(s) 64, 246, 541, 985, 1024
BtsI GCAGTG 2 cut(s) 360, 1686
BtsIMutI CAGTG 3 cut(s) 360, 1083, 1686
Cac8I GCNNGC 2 cut(s) 22, 560
CciI TCATGA 2 cut(s) 103, 142
Cfr10I RCCGGY 1 cut(s) 70
Cfr13I GGNCC 1 cut(s) 541
Cfr9I CCCGGG 1 cut(s) 1647
ClaI ATCGAT 1 cut(s) 271
CseI GACGC 1 cut(s) 1175
Csp6I GTAC 4 cut(s) 93, 972, 1198, 1688
CviAII CATG 8 cut(s) 104, 143, 392, 559, 587, 626, 1233, 1331
CviQI GTAC 4 cut(s) 93, 972, 1198, 1688
DdeI CTNAG 7 cut(s) 16, 383, 575, 896, 905, 1297, 1318
DpnI GATC 6 cut(s) 135, 179, 777, 963, 1335, 1673
DpnII GATC 6 cut(s) 133, 177, 775, 961, 1333, 1671
EaeI YGGCCR 1 cut(s) 1346
Eco130I CCWWGG 1 cut(s) 508
Eco32I GATATC 1 cut(s) 1239
Eco57I CTGAAG 2 cut(s) 98, 1076
Eco88I CYCGRG 1 cut(s) 1647
EcoO109I RGGNCCY 1 cut(s) 541
EcoRV GATATC 1 cut(s) 1239
EcoT14I CCWWGG 1 cut(s) 508
EcoT22I ATGCAT 3 cut(s) 631, 1234, 1619
ErhI CCWWGG 1 cut(s) 508
Esp3I CGTCTC 2 cut(s) 1356, 1626
FaeI CATG 8 cut(s) 107, 146, 395, 562, 590, 629, 1236, 1334
FalI AAGNNNNNCTT 4 cut(s) 815, 847, 1206, 1238
FaqI GGGAC 2 cut(s) 279, 1664
FatI CATG 8 cut(s) 103, 142, 391, 558, 586, 625, 1232, 1330
FauNDI CATATG 1 cut(s) 1000
FblI GTMKAC 2 cut(s) 5, 153
Fnu4HI GCNGC 6 cut(s) 25, 39, 75, 445, 1584, 1587
FokI GGATG 5 cut(s) 71, 233, 548, 992, 1031
Fsp4HI GCNGC 6 cut(s) 25, 39, 75, 445, 1584, 1587
FspBI CTAG 9 cut(s) 218, 665, 672, 740, 986, 1262, 1400, 1545, 1676
GluI GCNGC 6 cut(s) 25, 39, 75, 445, 1584, 1587
HaeIII GGCC 3 cut(s) 281, 542, 1348
HapII CCGG 3 cut(s) 71, 1648, 1669
HgaI GACGC 1 cut(s) 1175
Hin1I GRCGYC 1 cut(s) 1186
Hin1II CATG 8 cut(s) 107, 146, 395, 562, 590, 629, 1236, 1334
HindIII AAGCTT 2 cut(s) 498, 1161
HpaII CCGG 3 cut(s) 71, 1648, 1669
HphI GGTGA 2 cut(s) 544, 1319
Hpy166II GTNNAC 5 cut(s) 6, 154, 1129, 1200, 1267
Hpy188I TCNGA 7 cut(s) 192, 377, 1045, 1250, 1300, 1439, 1459
Hpy188III TCNNGA 3 cut(s) 104, 143, 320
Hpy8I GTNNAC 5 cut(s) 6, 154, 1129, 1200, 1267
Hpy99I CGWCG 1 cut(s) 443
HpyAV CCTTC 5 cut(s) 512, 796, 841, 1108, 1145
HpyCH4III ACNGT 1 cut(s) 1087
HpyCH4IV ACGT 2 cut(s) 1131, 1441
HpyF10VI GCNNNNNNNGC 5 cut(s) 21, 30, 444, 1550, 1607
HpyF3I CTNAG 7 cut(s) 16, 383, 575, 896, 905, 1297, 1318
HpySE526I ACGT 2 cut(s) 1131, 1441
Hsp92I GRCGYC 1 cut(s) 1186
Hsp92II CATG 8 cut(s) 107, 146, 395, 562, 590, 629, 1236, 1334
Kzo9I GATC 6 cut(s) 133, 177, 775, 961, 1333, 1671
LmnI GCTCC 1 cut(s) 1117
Lsp1109I GCAGC 6 cut(s) 25, 36, 86, 456, 1595, 1598
LweI GCATC 3 cut(s) 627, 697, 1443
MaeI CTAG 9 cut(s) 218, 665, 672, 740, 986, 1262, 1400, 1545, 1676
MaeII ACGT 2 cut(s) 1131, 1441
MaeIII GTNAC 3 cut(s) 213, 589, 1187
MalI GATC 6 cut(s) 135, 179, 777, 963, 1335, 1673
MboI GATC 6 cut(s) 133, 177, 775, 961, 1333, 1671
MboII GAAGA 7 cut(s) 104, 158, 325, 1226, 1522, 1525, 1548
MfeI CAATTG 1 cut(s) 945
MflI RGATCY 2 cut(s) 775, 1671
MhlI GDGCHC 2 cut(s) 934, 1648
MluCI AATT 9 cut(s) 79, 233, 423, 728, 945, 1035, 1489, 1574, 1605
MlyI GAGTC 5 cut(s) 109, 221, 372, 496, 631
MmeI TCCRAC 3 cut(s) 274, 400, 1487
Mph1103I ATGCAT 3 cut(s) 631, 1234, 1619
MseI TTAA 5 cut(s) 63, 780, 1169, 1311, 1699
MslI CAYNNNNRTG 3 cut(s) 57, 557, 1312
MspA1I CMGCKG 2 cut(s) 27, 1054
MspI CCGG 3 cut(s) 71, 1648, 1669
MspR9I CCNGG 2 cut(s) 1648, 1649
MunI CAATTG 1 cut(s) 945
Mva1269I GAATGC 3 cut(s) 548, 660, 1030
MwoI GCNNNNNNNGC 5 cut(s) 21, 30, 444, 1550, 1607
NciI CCSGG 2 cut(s) 1648, 1649
NdeI CATATG 1 cut(s) 1000
NdeII GATC 6 cut(s) 133, 177, 775, 961, 1333, 1671
NlaIII CATG 8 cut(s) 107, 146, 395, 562, 590, 629, 1236, 1334
NlaIV GGNNCC 2 cut(s) 1645, 1673
NmuCI GTSAC 2 cut(s) 213, 1187
NsiI ATGCAT 3 cut(s) 631, 1234, 1619
NspI RCATGY 2 cut(s) 562, 590
PaeI GCATGC 1 cut(s) 562
PagI TCATGA 2 cut(s) 103, 142
PctI GAATGC 3 cut(s) 548, 660, 1030
PfeI GAWTC 6 cut(s) 187, 273, 316, 1285, 1324, 1466
PflMI CCANNNNNTGG 1 cut(s) 1233
PkrI GCNGC 6 cut(s) 26, 40, 76, 446, 1585, 1588
PleI GAGTC 5 cut(s) 108, 220, 372, 495, 630
PpsI GAGTC 5 cut(s) 108, 220, 372, 495, 630
PspN4I GGNNCC 2 cut(s) 1645, 1673
PspPI GGNCC 1 cut(s) 541
PsuI RGATCY 2 cut(s) 775, 1671
PvuII CAGCTG 1 cut(s) 1054
RsaI GTAC 4 cut(s) 94, 973, 1199, 1689
RsaNI GTAC 4 cut(s) 93, 972, 1198, 1688
RseI CAYNNNNRTG 3 cut(s) 57, 557, 1312
SaqAI TTAA 5 cut(s) 63, 780, 1169, 1311, 1699
SatI GCNGC 6 cut(s) 25, 39, 75, 445, 1584, 1587
Sau3AI GATC 6 cut(s) 133, 177, 775, 961, 1333, 1671
Sau96I GGNCC 1 cut(s) 541
ScaI AGTACT 1 cut(s) 94
SchI GAGTC 5 cut(s) 109, 221, 372, 496, 631
ScrFI CCNGG 2 cut(s) 1648, 1649
SduI GDGCHC 2 cut(s) 934, 1648
SfaNI GCATC 3 cut(s) 627, 697, 1443
SmaI CCCGGG 1 cut(s) 1649
SmiMI CAYNNNNRTG 3 cut(s) 57, 557, 1312
SmlI CTYRAG 1 cut(s) 594
SmoI CTYRAG 1 cut(s) 594
SphI GCATGC 1 cut(s) 562
Sse9I AATT 9 cut(s) 79, 233, 423, 728, 945, 1035, 1489, 1574, 1605
SsiI CCGC 1 cut(s) 27
SspI AATATT 1 cut(s) 199
SspMI CTAG 9 cut(s) 218, 665, 672, 740, 986, 1262, 1400, 1545, 1676
StyD4I CCNGG 2 cut(s) 1646, 1647
StyI CCWWGG 1 cut(s) 508
TaaI ACNGT 1 cut(s) 1087
TaiI ACGT 2 cut(s) 1134, 1444
TaqI TCGA 4 cut(s) 180, 271, 276, 1603
TasI AATT 9 cut(s) 79, 233, 423, 728, 945, 1035, 1489, 1574, 1605
TatI WGTACW 3 cut(s) 92, 1197, 1687
TfiI GAWTC 6 cut(s) 187, 273, 316, 1285, 1324, 1466
Tru1I TTAA 5 cut(s) 63, 780, 1169, 1311, 1699
Tru9I TTAA 5 cut(s) 63, 780, 1169, 1311, 1699
TscAI CASTG 3 cut(s) 367, 1090, 1686
TseFI GTSAC 2 cut(s) 213, 1187
TseI GCWGC 6 cut(s) 24, 38, 74, 444, 1583, 1586
Tsp45I GTSAC 2 cut(s) 213, 1187
TspDTI ATGAA 6 cut(s) 159, 492, 1107, 1119, 1317, 1532
TspMI CCCGGG 1 cut(s) 1647
TspRI CASTG 3 cut(s) 367, 1090, 1686
Van91I CCANNNNNTGG 1 cut(s) 1233
XapI RAATTY 4 cut(s) 423, 728, 1035, 1574
XceI RCATGY 2 cut(s) 562, 590
XmaI CCCGGG 1 cut(s) 1647
XmiI GTMKAC 2 cut(s) 5, 153
XspI CTAG 9 cut(s) 218, 665, 672, 740, 986, 1262, 1400, 1545, 1676
ZrmI AGTACT 1 cut(s) 94
Zsp2I ATGCAT 3 cut(s) 631, 1234, 1619
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.