Rh3BG300000

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000768
Physical Location & Seq
Reverse (-)
30125966 .. 30129272
3307 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG300000.1

Sequence Viewer

Length: 840 bp
ATGATTGATGTTTTCAAAATTTTCACGGACTGCGACGACAGCTTCAAGGACTGCCTTTGCAAAGATGTCAAAGGAATGTTGAGTCTATACGAAGCTTCATTCCTTGGTATTGAAGGAGAAACCCTCTTGGATGAGGCCCTTGCATTCACCAGCATGCACCTAAAGAACCCCAGTAGATTGCATGTTACTCAAGGCAAAGGTGTATTAGAGCAAGTGAGTCATGCATTGGAGATGCCATTGCACCATAGAATGCAAAGACTAGAGGCTAGATGGTATATTGAGGCATACAGTAAAAAGGCAGATGCAAATCAGGTGCTACTTGAATTTGCCAAGCTAGATTACAATGTGGTGCAACAAACATACCAAAGAGATCTTAAAGACATTTCAAGATGGGATGTGAATGCTGTGGAGATTCTATCAGACTACCAACTGAAGCTCTGTTTCCTTGCTCTCTATAACACTGTGAATGAATTGACTTATGAAACTTTGAAGGAGCAAGGAGTGAACATCCTTCCTTACGTGAGAAAAGCTGCAGAACTAGAGAGAGGTGAAACTGCAACTTCAATATCCTGCATTAGACGTGATGGTGTTGTTTCTGATGAGGAATCTGCTCGCAAATATATTAGTAATTTGATTGAGAATAGTTGGAAGAAGATGAACAAAGATGGACTACTATTTGGTACTAGTAGAGCTTCTTCTCCATTCACAAAGGAATTTGTAGCAGCAGCAACGAACCTTGCTCGAATTGCCCAATGCATTTACCAATATGGAGACGGGATTGGTGCCCCAGACAAAAGAGTAAAGAACCAGATCCTAGCAGTGATTGTACAACCCGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

279

Amino Acids

31.68

Weight (kDa)

5.82

Isoelectric Point (pI)

35.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 3 - 76 5.3e-20 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 128 - 177 2.2e-08 Terpene synthase family, metal binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 782
AclWI GGATC 1 cut(s) 805
AcsI RAATTY 3 cut(s) 18, 323, 713
AcuI CTGAAG 1 cut(s) 452
AfaI GTAC 2 cut(s) 682, 828
AgsI TTSAA 7 cut(s) 16, 46, 113, 323, 387, 490, 564
AhlI ACTAGT 1 cut(s) 683
AjiI CACGTC 1 cut(s) 581
AluBI AGCT 6 cut(s) 42, 95, 334, 436, 530, 692
AluI AGCT 6 cut(s) 42, 95, 334, 436, 530, 692
Alw26I GTCTC 1 cut(s) 765
AlwI GGATC 1 cut(s) 805
AoxI GGCC 1 cut(s) 135
ApeKI GCWGC 3 cut(s) 530, 722, 725
ApoI RAATTY 3 cut(s) 18, 323, 713
AspS9I GGNCC 1 cut(s) 136
AsuHPI GGTGA 2 cut(s) 139, 560
BaeGI GKGCMC 1 cut(s) 787
BanI GGYRCC 1 cut(s) 782
BarI GAAGNNNNNNTAC 2 cut(s) 679, 711
BbvI GCAGC 3 cut(s) 517, 734, 737
BccI CCATC 4 cut(s) 264, 384, 578, 659
BcoDI GTCTC 1 cut(s) 765
BcuI ACTAGT 1 cut(s) 683
BfaI CTAG 6 cut(s) 260, 267, 335, 539, 684, 815
BfmI CTRYAG 1 cut(s) 531
BglII AGATCT 1 cut(s) 370
BisI GCNGC 3 cut(s) 531, 723, 726
BlsI GCNGC 3 cut(s) 532, 724, 727
BmgBI CACGTC 1 cut(s) 581
BmgT120I GGNCC 1 cut(s) 136
BmiI GGNNCC 1 cut(s) 784
BmrI ACTGGG 1 cut(s) 165
BmsI GCATC 2 cut(s) 222, 292
BmuI ACTGGG 1 cut(s) 165
BplI GAGNNNNNCTC 2 cut(s) 108, 140
BpuEI CTTGAG 1 cut(s) 174
BsaAI YACGTR 1 cut(s) 520
BsaBI GATNNNNATC 1 cut(s) 306
BsaJI CCNNGG 1 cut(s) 103
Bse1I ACTGG 1 cut(s) 171
Bse3DI GCAATG 1 cut(s) 236
Bse8I GATNNNNATC 1 cut(s) 306
BseDI CCNNGG 1 cut(s) 103
BseGI GGATG 3 cut(s) 136, 400, 507
BseJI GATNNNNATC 1 cut(s) 306
BseMI GCAATG 1 cut(s) 236
BseNI ACTGG 1 cut(s) 171
BseSI GKGCMC 1 cut(s) 787
BseXI GCAGC 3 cut(s) 517, 734, 737
BshFI GGCC 1 cut(s) 137
BshNI GGYRCC 1 cut(s) 782
BsmAI GTCTC 1 cut(s) 765
BsmBI CGTCTC 1 cut(s) 765
BsmI GAATGC 3 cut(s) 143, 255, 406
BsnI GGCC 1 cut(s) 137
Bsp1286I GDGCHC 1 cut(s) 787
Bsp1407I TGTACA 1 cut(s) 826
Bsp143I GATC 2 cut(s) 370, 810
BspANI GGCC 1 cut(s) 137
BspLI GGNNCC 1 cut(s) 784
BspMAI CTGCAG 1 cut(s) 535
BspPI GGATC 1 cut(s) 805
BspT107I GGYRCC 1 cut(s) 782
BsrDI GCAATG 1 cut(s) 236
BsrGI TGTACA 1 cut(s) 826
BsrI ACTGG 1 cut(s) 171
BssECI CCNNGG 1 cut(s) 103
BssMI GATC 2 cut(s) 370, 810
BssT1I CCWWGG 1 cut(s) 103
Bst4CI ACNGT 2 cut(s) 290, 463
BstAUI TGTACA 1 cut(s) 826
BstBAI YACGTR 1 cut(s) 520
BstC8I GCNNGC 2 cut(s) 155, 613
BstF5I GGATG 3 cut(s) 136, 400, 507
BstKTI GATC 2 cut(s) 373, 813
BstMAI GTCTC 1 cut(s) 765
BstMBI GATC 2 cut(s) 370, 810
BstMWI GCNNNNNNNGC 2 cut(s) 39, 746
BstNSI RCATGY 2 cut(s) 157, 185
BstSFI CTRYAG 1 cut(s) 531
BstSLI GKGCMC 1 cut(s) 787
BstV1I GCAGC 3 cut(s) 517, 734, 737
BstX2I RGATCY 2 cut(s) 370, 810
BstYI RGATCY 2 cut(s) 370, 810
BsuRI GGCC 1 cut(s) 137
BtrI CACGTC 1 cut(s) 581
BtsCI GGATG 3 cut(s) 136, 400, 507
BtsI GCAGTG 1 cut(s) 825
BtsIMutI CAGTG 2 cut(s) 459, 825
Cac8I GCNNGC 2 cut(s) 155, 613
Cfr13I GGNCC 1 cut(s) 136
Csp6I GTAC 2 cut(s) 681, 827
CviAII CATG 3 cut(s) 154, 182, 221
CviJI RGCY 8 cut(s) 42, 95, 137, 266, 334, 436, 530, 692
CviKI_1 RGCY 8 cut(s) 42, 95, 137, 266, 334, 436, 530, 692
CviQI GTAC 2 cut(s) 681, 827
DpnI GATC 2 cut(s) 372, 812
DpnII GATC 2 cut(s) 370, 810
Eco130I CCWWGG 1 cut(s) 103
Eco57I CTGAAG 1 cut(s) 452
EcoO109I RGGNCCY 1 cut(s) 136
EcoT14I CCWWGG 1 cut(s) 103
EcoT22I ATGCAT 2 cut(s) 226, 758
ErhI CCWWGG 1 cut(s) 103
Esp3I CGTCTC 1 cut(s) 765
FaeI CATG 3 cut(s) 157, 185, 224
FatI CATG 3 cut(s) 153, 181, 220
Fnu4HI GCNGC 3 cut(s) 531, 723, 726
FokI GGATG 3 cut(s) 143, 407, 494
Fsp4HI GCNGC 3 cut(s) 531, 723, 726
FspBI CTAG 6 cut(s) 260, 267, 335, 539, 684, 815
GluI GCNGC 3 cut(s) 531, 723, 726
HaeIII GGCC 1 cut(s) 137
Hin1II CATG 3 cut(s) 157, 185, 224
HindIII AAGCTT 1 cut(s) 93
HinfI GANTC 4 cut(s) 82, 217, 412, 605
HphI GGTGA 2 cut(s) 139, 560
Hpy166II GTNNAC 1 cut(s) 505
Hpy188I TCNGA 2 cut(s) 421, 598
Hpy188III TCNNGA 1 cut(s) 387
Hpy8I GTNNAC 1 cut(s) 505
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 3 cut(s) 107, 484, 521
HpyCH4III ACNGT 2 cut(s) 290, 463
HpyCH4IV ACGT 2 cut(s) 519, 580
HpyF10VI GCNNNNNNNGC 2 cut(s) 39, 746
HpySE526I ACGT 2 cut(s) 519, 580
Hsp92II CATG 3 cut(s) 157, 185, 224
Kzo9I GATC 2 cut(s) 370, 810
LmnI GCTCC 1 cut(s) 493
LpnPI CCDG 6 cut(s) 163, 184, 296, 583, 801, 821
Lsp1109I GCAGC 3 cut(s) 517, 734, 737
LweI GCATC 2 cut(s) 222, 292
MaeI CTAG 6 cut(s) 260, 267, 335, 539, 684, 815
MaeII ACGT 2 cut(s) 519, 580
MaeIII GTNAC 1 cut(s) 184
MalI GATC 2 cut(s) 372, 812
MboI GATC 2 cut(s) 370, 810
MboII GAAGA 3 cut(s) 661, 664, 687
MflI RGATCY 2 cut(s) 370, 810
MhlI GDGCHC 1 cut(s) 787
MluCI AATT 6 cut(s) 18, 323, 470, 628, 713, 744
MlyI GAGTC 2 cut(s) 91, 226
MmeI TCCRAC 1 cut(s) 626
MnlI CCTC 6 cut(s) 127, 134, 256, 274, 539, 595
Mph1103I ATGCAT 2 cut(s) 226, 758
MseI TTAA 2 cut(s) 375, 838
MslI CAYNNNNRTG 1 cut(s) 152
Mva1269I GAATGC 3 cut(s) 143, 255, 406
MwoI GCNNNNNNNGC 2 cut(s) 39, 746
NdeII GATC 2 cut(s) 370, 810
NlaIII CATG 3 cut(s) 157, 185, 224
NlaIV GGNNCC 1 cut(s) 784
NsiI ATGCAT 2 cut(s) 226, 758
NspI RCATGY 2 cut(s) 157, 185
PaeI GCATGC 1 cut(s) 157
PctI GAATGC 3 cut(s) 143, 255, 406
PfeI GAWTC 2 cut(s) 412, 605
PkrI GCNGC 3 cut(s) 532, 724, 727
PleI GAGTC 2 cut(s) 90, 225
PpsI GAGTC 2 cut(s) 90, 225
Ppu21I YACGTR 1 cut(s) 520
PspN4I GGNNCC 1 cut(s) 784
PspPI GGNCC 1 cut(s) 136
PstI CTGCAG 1 cut(s) 535
PsuI RGATCY 2 cut(s) 370, 810
RsaI GTAC 2 cut(s) 682, 828
RsaNI GTAC 2 cut(s) 681, 827
RseI CAYNNNNRTG 1 cut(s) 152
SaqAI TTAA 2 cut(s) 375, 838
SatI GCNGC 3 cut(s) 531, 723, 726
Sau3AI GATC 2 cut(s) 370, 810
Sau96I GGNCC 1 cut(s) 136
SchI GAGTC 2 cut(s) 91, 226
SduI GDGCHC 1 cut(s) 787
SfaNI GCATC 2 cut(s) 222, 292
SfcI CTRYAG 1 cut(s) 531
SmiMI CAYNNNNRTG 1 cut(s) 152
SmlI CTYRAG 1 cut(s) 189
SmoI CTYRAG 1 cut(s) 189
SpeI ACTAGT 1 cut(s) 683
SphI GCATGC 1 cut(s) 157
Sse9I AATT 6 cut(s) 18, 323, 470, 628, 713, 744
SspMI CTAG 6 cut(s) 260, 267, 335, 539, 684, 815
StyI CCWWGG 1 cut(s) 103
TaaI ACNGT 2 cut(s) 290, 463
TaiI ACGT 2 cut(s) 522, 583
TaqI TCGA 1 cut(s) 742
TasI AATT 6 cut(s) 18, 323, 470, 628, 713, 744
TatI WGTACW 1 cut(s) 826
TfiI GAWTC 2 cut(s) 412, 605
Tru1I TTAA 2 cut(s) 375, 838
Tru9I TTAA 2 cut(s) 375, 838
TscAI CASTG 2 cut(s) 466, 825
TseI GCWGC 3 cut(s) 530, 722, 725
TspDTI ATGAA 4 cut(s) 87, 483, 495, 671
TspGWI ACGGA 1 cut(s) 41
TspRI CASTG 2 cut(s) 466, 825
XapI RAATTY 3 cut(s) 18, 323, 713
XceI RCATGY 2 cut(s) 157, 185
XspI CTAG 6 cut(s) 260, 267, 335, 539, 684, 815
Zsp2I ATGCAT 2 cut(s) 226, 758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.