Rw6G004920

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000768
Physical Location & Seq
Forward (+)
8095018 .. 8099814
4797 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G004920.1

Sequence Viewer

Length: 1641 bp
ATGAAACCAAGCTCCAACAAATCTGCGATATTAAGGTCATCTCCAATACCCAAAGAGATAACTGAAGAAGACAAAGATAATAGGTGGAAGTTGTTAGAGGAGGATGTGAAAAATATGATTGATTATGATAATGATGCGCAATCACTAGTCACTACACTTGAATTGATTGATGACATCCAACGATTAGGTTTGAGACACCGATTTGAGGCCAGTATAACAGAAGCCCTTGATAGAGTTTTGAAGAATCTTGATCAAATAACAAACGAGGATACTCCAAGTCTCCACCTCAATGCTCTCAGCTTCAGGCTCTTAGACAGCATGGGTTTCAAGTCTTCCAAGGTAAATGTCTTCAAAATTTTCATAGACTACGACGACAGCTTTAAGAATTGCCTTTGCAAAGATGTCAAAGGGATGCTAAGTCTGTACGAAGCTTCATTCCTTGGTATTGAAGGAGAAACCCTCTTGGATGAGGCCCTTGCATTCACCAGCATGCATCTAAAGAACCTCAGCATACTCCATGTTACTCAAGACAAAGGTGTATTAGAGCAAGTGAGTCATGCATTGGAGATGCCATTGCACCACAGGATGCAAAGATTAGAAGCTAGATGGTATATTGAGGCATACAGTAAAAAGGCAGATGCAAATCAGGTGCTACTTGAATTTGCCAAGCTAGATTACAATGTGGTGCAACAAACATACCAAAGAGATTTTAAAGACGTTTCAAGGTGGTGGAAGGATCTGGGGTTAGCAAAGAAGTTGTCATTCAGCAGAGACAAACTGATGGAGCTATTGTTTTGGTCAGTTGGTATAGTGTTTGAACCTCAATTACGCAATCTTAGAAAAGGAATAACTAAAGTCAGTGCTCTAATAATGACTATTGATGATGTCTATGACGTTTATGGTACTTTGGATGAACTGAAGCTATTCACATCTGTTGTTGAAAGATGGGATGTGAATGCTGTGGAAGTTCTTTCAGAGTACAAGCTGAAGCTCTGTTTCCTTGCTCTCTATAACACTGTGAATGAAATGACTTATGAAACTTTGAAGGAGCAAGGAGTGAATGTCCTTCCTTACGTGACAAAAGCTTGGGCTGATATGTGCAAATCTTGGTTAACGGAGGCAGAGTGGCGTCACAACAAGTACACACCTACATTTGAAGAATATCTTGCCAATGCATGGATATCATCGTCCGGGGTGGTAATTCTAGTCCATATCTACTTTCTACTGAATCAAAATATCTCAGATGAAGCACTTAGATGCTTAGAGAATCACCATGATCTCTTGCGTTGGCCGTCTCTTATTTTTCGGCTCTCAAATGATTTGGTTACTTCGAAGGCAGAACTAGAGAGAGGTGAAACTGCAACTTCTATATCCTGCATCAAACGTGATGGTGTTGTTTTTGATGAGGAATCTACTATCAAATATATTACTAATTTGATTGAGAATAGTTGGAAGAAGATGAATAAAGATGGACTACTATTTCGTGTTAGTAGTGCTTCTCCGTTCACAAAGGAATTTGTAGCAGCAGCAATAAACCTTGCTCGGATTGCCCAATGCATTTACCAATATGGAGACGGGTTTGGTGCCCCAGACAACAGAGTAAAGAATCAGATCCTAGCAGTGATTGTACAACCCGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

546

Amino Acids

62.92

Weight (kDa)

5.49

Isoelectric Point (pI)

37.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 20 - 188 1.1e-40 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 245 - 486 3e-83 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 285 - 486 4.1e-56 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 138
AccB1I GGYRCC 1 cut(s) 1583
AccB7I CCANNNNNTGG 1 cut(s) 1176
AclWI GGATC 2 cut(s) 744, 1606
AcoI YGGCCR 1 cut(s) 1289
AcsI RAATTY 3 cut(s) 354, 659, 1514
AcuI CTGAAG 4 cut(s) 84, 286, 938, 1007
AcyI GRCGYC 1 cut(s) 1129
AfaI GTAC 5 cut(s) 425, 904, 980, 1142, 1629
AfiI CCNNNNNNNGG 2 cut(s) 205, 1176
AhlI ACTAGT 1 cut(s) 145
Alw21I GWGCWC 1 cut(s) 865
Alw26I GTCTC 5 cut(s) 187, 284, 765, 1299, 1566
AlwI GGATC 2 cut(s) 744, 1606
AoxI GGCC 3 cut(s) 207, 471, 1289
ApeKI GCWGC 2 cut(s) 1523, 1526
ApoI RAATTY 3 cut(s) 354, 659, 1514
ArsI GACNNNNNNTTYG 4 cut(s) 743, 775, 1464, 1496
Asp700I GAANNNNTTC 1 cut(s) 923
AspLEI GCGC 1 cut(s) 139
AspS9I GGNCC 1 cut(s) 472
AsuC2I CCSGG 1 cut(s) 1192
AsuHPI GGTGA 3 cut(s) 475, 1262, 1364
AsuII TTCGAA 1 cut(s) 1331
BaeGI GKGCMC 1 cut(s) 1588
BanI GGYRCC 1 cut(s) 1583
BbsI GAAGAC 3 cut(s) 75, 324, 340
Bbv12I GWGCWC 1 cut(s) 865
BbvCI CCTCAGC 1 cut(s) 506
BbvI GCAGC 2 cut(s) 1535, 1538
BccI CCATC 5 cut(s) 600, 775, 939, 1382, 1463
BceAI ACGGC 1 cut(s) 1276
BciVI GTATCC 1 cut(s) 262
BclI TGATCA 1 cut(s) 250
BcnI CCSGG 1 cut(s) 1192
BcoDI GTCTC 5 cut(s) 187, 284, 765, 1299, 1566
BcuI ACTAGT 1 cut(s) 145
BfaI CTAG 6 cut(s) 146, 603, 671, 1205, 1343, 1616
BfuI GTATCC 1 cut(s) 262
BisI GCNGC 2 cut(s) 1524, 1527
BlsI GCNGC 2 cut(s) 1525, 1528
Bme1390I CCNGG 1 cut(s) 1192
BmgT120I GGNCC 1 cut(s) 472
BmiI GGNNCC 1 cut(s) 1585
BmrFI CCNGG 1 cut(s) 1192
BmsI GCATC 8 cut(s) 124, 402, 502, 558, 576, 628, 1247, 1386
BpiI GAAGAC 3 cut(s) 75, 324, 340
BplI GAGNNNNNCTC 2 cut(s) 444, 476
Bpu10I CCTNAGC 1 cut(s) 506
Bpu14I TTCGAA 1 cut(s) 1331
BpuEI CTTGAG 1 cut(s) 510
BpuMI CCSGG 1 cut(s) 1192
BsaAI YACGTR 1 cut(s) 1075
BsaBI GATNNNNATC 1 cut(s) 642
BsaHI GRCGYC 1 cut(s) 1129
BsaJI CCNNGG 3 cut(s) 336, 439, 1191
BsaXI ACNNNNNCTCC 6 cut(s) 776, 806, 1047, 1077, 1109, 1139
Bsc4I CCNNNNNNNGG 2 cut(s) 205, 1176
Bse1I ACTGG 1 cut(s) 210
Bse3DI GCAATG 1 cut(s) 572
Bse8I GATNNNNATC 1 cut(s) 642
BseDI CCNNGG 3 cut(s) 336, 439, 1191
BseGI GGATG 7 cut(s) 109, 174, 417, 472, 591, 916, 955
BseJI GATNNNNATC 1 cut(s) 642
BseLI CCNNNNNNNGG 2 cut(s) 205, 1176
BseMI GCAATG 1 cut(s) 572
BseMII CTCAG 3 cut(s) 310, 520, 1254
BseNI ACTGG 1 cut(s) 210
BseRI GAGGAG 1 cut(s) 113
BseSI GKGCMC 1 cut(s) 1588
BseXI GCAGC 2 cut(s) 1535, 1538
BshFI GGCC 3 cut(s) 209, 473, 1291
BshNI GGYRCC 1 cut(s) 1583
BsiHKAI GWGCWC 1 cut(s) 865
BsiSI CCGG 1 cut(s) 1191
BslI CCNNNNNNNGG 2 cut(s) 205, 1176
BsmAI GTCTC 5 cut(s) 187, 284, 765, 1299, 1566
BsmBI CGTCTC 2 cut(s) 1299, 1566
BsmI GAATGC 2 cut(s) 479, 961
BsnI GGCC 3 cut(s) 209, 473, 1291
Bsp119I TTCGAA 1 cut(s) 1331
Bsp1286I GDGCHC 2 cut(s) 865, 1588
Bsp1407I TGTACA 1 cut(s) 1627
Bsp143I GATC 4 cut(s) 250, 736, 1276, 1611
BspANI GGCC 3 cut(s) 209, 473, 1291
BspCNI CTCAG 3 cut(s) 309, 519, 1253
BspLI GGNNCC 1 cut(s) 1585
BspPI GGATC 2 cut(s) 744, 1606
BspT104I TTCGAA 1 cut(s) 1331
BspT107I GGYRCC 1 cut(s) 1583
BsrDI GCAATG 1 cut(s) 572
BsrGI TGTACA 1 cut(s) 1627
BsrI ACTGG 1 cut(s) 210
BssECI CCNNGG 3 cut(s) 336, 439, 1191
BssMI GATC 4 cut(s) 250, 736, 1276, 1611
BssNI GRCGYC 1 cut(s) 1129
BssT1I CCWWGG 2 cut(s) 336, 439
Bst4CI ACNGT 2 cut(s) 626, 1018
BstACI GRCGYC 1 cut(s) 1129
BstAUI TGTACA 1 cut(s) 1627
BstBAI YACGTR 1 cut(s) 1075
BstBI TTCGAA 1 cut(s) 1331
BstC8I GCNNGC 1 cut(s) 491
BstDEI CTNAG 8 cut(s) 296, 310, 416, 506, 836, 1240, 1253, 1261
BstF5I GGATG 7 cut(s) 109, 174, 417, 472, 591, 916, 955
BstHHI GCGC 1 cut(s) 139
BstKTI GATC 4 cut(s) 253, 739, 1279, 1614
BstMAI GTCTC 5 cut(s) 187, 284, 765, 1299, 1566
BstMBI GATC 4 cut(s) 250, 736, 1276, 1611
BstMWI GCNNNNNNNGC 1 cut(s) 1547
BstNSI RCATGY 1 cut(s) 493
BstSCI CCNGG 1 cut(s) 1190
BstSLI GKGCMC 1 cut(s) 1588
BstV1I GCAGC 2 cut(s) 1535, 1538
BstV2I GAAGAC 3 cut(s) 75, 324, 340
BstX2I RGATCY 2 cut(s) 736, 1611
BstYI RGATCY 2 cut(s) 736, 1611
BsuI GTATCC 1 cut(s) 262
BsuRI GGCC 3 cut(s) 209, 473, 1291
BtsCI GGATG 7 cut(s) 109, 174, 417, 472, 591, 916, 955
BtsI GCAGTG 1 cut(s) 1626
BtsIMutI CAGTG 3 cut(s) 865, 1014, 1626
Cac8I GCNNGC 1 cut(s) 491
CfoI GCGC 1 cut(s) 139
Cfr13I GGNCC 1 cut(s) 472
CseI GACGC 1 cut(s) 1118
Csp6I GTAC 5 cut(s) 424, 903, 979, 1141, 1628
CviAII CATG 6 cut(s) 319, 490, 518, 557, 1176, 1274
CviQI GTAC 5 cut(s) 424, 903, 979, 1141, 1628
DdeI CTNAG 8 cut(s) 296, 310, 416, 506, 836, 1240, 1253, 1261
DpnI GATC 4 cut(s) 252, 738, 1278, 1613
DpnII GATC 4 cut(s) 250, 736, 1276, 1611
DraI TTTAAA 1 cut(s) 712
EaeI YGGCCR 1 cut(s) 1289
Eco130I CCWWGG 2 cut(s) 336, 439
Eco32I GATATC 1 cut(s) 1182
Eco57I CTGAAG 4 cut(s) 84, 286, 938, 1007
EcoO109I RGGNCCY 1 cut(s) 472
EcoRV GATATC 1 cut(s) 1182
EcoT14I CCWWGG 2 cut(s) 336, 439
EcoT22I ATGCAT 4 cut(s) 495, 562, 1177, 1559
ErhI CCWWGG 2 cut(s) 336, 439
Esp3I CGTCTC 2 cut(s) 1299, 1566
FaeI CATG 6 cut(s) 322, 493, 521, 560, 1179, 1277
FalI AAGNNNNNCTT 2 cut(s) 1149, 1181
FatI CATG 6 cut(s) 318, 489, 517, 556, 1175, 1273
FbaI TGATCA 1 cut(s) 250
Fnu4HI GCNGC 2 cut(s) 1524, 1527
FokI GGATG 7 cut(s) 116, 161, 424, 479, 598, 923, 962
Fsp4HI GCNGC 2 cut(s) 1524, 1527
FspBI CTAG 6 cut(s) 146, 603, 671, 1205, 1343, 1616
FspI TGCGCA 1 cut(s) 138
GlaI GCGC 1 cut(s) 138
GluI GCNGC 2 cut(s) 1524, 1527
HaeIII GGCC 3 cut(s) 209, 473, 1291
HapII CCGG 1 cut(s) 1191
HgaI GACGC 1 cut(s) 1118
HhaI GCGC 1 cut(s) 139
Hin1I GRCGYC 1 cut(s) 1129
Hin1II CATG 6 cut(s) 322, 493, 521, 560, 1179, 1277
Hin6I GCGC 1 cut(s) 137
HinP1I GCGC 1 cut(s) 137
HincII GTYRAC 1 cut(s) 1113
HindII GTYRAC 1 cut(s) 1113
HindIII AAGCTT 2 cut(s) 429, 1083
HinfI GANTC 6 cut(s) 244, 553, 1228, 1267, 1409, 1606
HpaI GTTAAC 1 cut(s) 1113
HpaII CCGG 1 cut(s) 1191
HphI GGTGA 3 cut(s) 475, 1262, 1364
Hpy166II GTNNAC 3 cut(s) 1113, 1143, 1506
Hpy188I TCNGA 4 cut(s) 976, 1243, 1545, 1611
Hpy188III TCNNGA 2 cut(s) 248, 527
Hpy8I GTNNAC 3 cut(s) 1113, 1143, 1506
Hpy99I CGWCG 1 cut(s) 374
HpyAV CCTTC 5 cut(s) 443, 727, 1039, 1076, 1327
HpyCH4III ACNGT 2 cut(s) 626, 1018
HpyCH4IV ACGT 4 cut(s) 717, 894, 1074, 1384
HpyF10VI GCNNNNNNNGC 1 cut(s) 1547
HpyF3I CTNAG 8 cut(s) 296, 310, 416, 506, 836, 1240, 1253, 1261
HpySE526I ACGT 4 cut(s) 717, 894, 1074, 1384
Hsp92I GRCGYC 1 cut(s) 1129
Hsp92II CATG 6 cut(s) 322, 493, 521, 560, 1179, 1277
HspAI GCGC 1 cut(s) 137
Ksp22I TGATCA 1 cut(s) 250
KspAI GTTAAC 1 cut(s) 1113
Kzo9I GATC 4 cut(s) 250, 736, 1276, 1611
LmnI GCTCC 3 cut(s) 17, 784, 1048
LpnPI CCDG 9 cut(s) 223, 289, 499, 568, 632, 725, 1204, 1387, 1602
Lsp1109I GCAGC 2 cut(s) 1535, 1538
LweI GCATC 8 cut(s) 124, 402, 502, 558, 576, 628, 1247, 1386
MaeI CTAG 6 cut(s) 146, 603, 671, 1205, 1343, 1616
MaeII ACGT 4 cut(s) 717, 894, 1074, 1384
MaeIII GTNAC 5 cut(s) 148, 520, 1075, 1130, 1324
MalI GATC 4 cut(s) 252, 738, 1278, 1613
MboI GATC 4 cut(s) 250, 736, 1276, 1611
MboII GAAGA 8 cut(s) 77, 80, 253, 324, 340, 1169, 1465, 1468
MflI RGATCY 2 cut(s) 736, 1611
MhlI GDGCHC 2 cut(s) 865, 1588
MluCI AATT 8 cut(s) 161, 354, 385, 659, 824, 1200, 1432, 1514
MlyI GAGTC 1 cut(s) 562
MmeI TCCRAC 3 cut(s) 39, 202, 1430
Mph1103I ATGCAT 4 cut(s) 495, 562, 1177, 1559
MroXI GAANNNNTTC 1 cut(s) 923
MseI TTAA 5 cut(s) 32, 381, 711, 1112, 1639
MslI CAYNNNNRTG 3 cut(s) 288, 488, 1255
MspI CCGG 1 cut(s) 1191
MspR9I CCNGG 1 cut(s) 1192
Mva1269I GAATGC 2 cut(s) 479, 961
MwoI GCNNNNNNNGC 1 cut(s) 1547
NciI CCSGG 1 cut(s) 1192
NdeII GATC 4 cut(s) 250, 736, 1276, 1611
NlaIII CATG 6 cut(s) 322, 493, 521, 560, 1179, 1277
NlaIV GGNNCC 1 cut(s) 1585
NmuCI GTSAC 3 cut(s) 148, 1075, 1130
NsbI TGCGCA 1 cut(s) 138
NsiI ATGCAT 4 cut(s) 495, 562, 1177, 1559
NspI RCATGY 1 cut(s) 493
NspV TTCGAA 1 cut(s) 1331
PaeI GCATGC 1 cut(s) 493
PctI GAATGC 2 cut(s) 479, 961
PdmI GAANNNNTTC 1 cut(s) 923
PfeI GAWTC 5 cut(s) 244, 1228, 1267, 1409, 1606
PflMI CCANNNNNTGG 1 cut(s) 1176
PkrI GCNGC 2 cut(s) 1525, 1528
PleI GAGTC 1 cut(s) 561
PpsI GAGTC 1 cut(s) 561
Ppu21I YACGTR 1 cut(s) 1075
PspN4I GGNNCC 1 cut(s) 1585
PspPI GGNCC 1 cut(s) 472
PsrI GAACNNNNNNTAC 2 cut(s) 810, 842
PsuI RGATCY 2 cut(s) 736, 1611
RsaI GTAC 5 cut(s) 425, 904, 980, 1142, 1629
RsaNI GTAC 5 cut(s) 424, 903, 979, 1141, 1628
RseI CAYNNNNRTG 3 cut(s) 288, 488, 1255
SaqAI TTAA 5 cut(s) 32, 381, 711, 1112, 1639
SatI GCNGC 2 cut(s) 1524, 1527
Sau3AI GATC 4 cut(s) 250, 736, 1276, 1611
Sau96I GGNCC 1 cut(s) 472
SchI GAGTC 1 cut(s) 562
ScrFI CCNGG 1 cut(s) 1192
SduI GDGCHC 2 cut(s) 865, 1588
SfaNI GCATC 8 cut(s) 124, 402, 502, 558, 576, 628, 1247, 1386
SfuI TTCGAA 1 cut(s) 1331
SmiMI CAYNNNNRTG 3 cut(s) 288, 488, 1255
SmlI CTYRAG 1 cut(s) 525
SmoI CTYRAG 1 cut(s) 525
SpeI ACTAGT 1 cut(s) 145
SphI GCATGC 1 cut(s) 493
Sse9I AATT 8 cut(s) 161, 354, 385, 659, 824, 1200, 1432, 1514
SspMI CTAG 6 cut(s) 146, 603, 671, 1205, 1343, 1616
StyD4I CCNGG 1 cut(s) 1190
StyI CCWWGG 2 cut(s) 336, 439
TaaI ACNGT 2 cut(s) 626, 1018
TaiI ACGT 4 cut(s) 720, 897, 1077, 1387
TaqI TCGA 1 cut(s) 1331
TasI AATT 8 cut(s) 161, 354, 385, 659, 824, 1200, 1432, 1514
TatI WGTACW 3 cut(s) 978, 1140, 1627
TfiI GAWTC 5 cut(s) 244, 1228, 1267, 1409, 1606
Tru1I TTAA 5 cut(s) 32, 381, 711, 1112, 1639
Tru9I TTAA 5 cut(s) 32, 381, 711, 1112, 1639
TscAI CASTG 3 cut(s) 865, 1021, 1626
TseFI GTSAC 3 cut(s) 148, 1075, 1130
TseI GCWGC 2 cut(s) 1523, 1526
Tsp45I GTSAC 3 cut(s) 148, 1075, 1130
TspDTI ATGAA 8 cut(s) 17, 349, 423, 927, 1038, 1050, 1260, 1475
TspGWI ACGGA 2 cut(s) 1130, 1491
TspRI CASTG 3 cut(s) 865, 1021, 1626
Van91I CCANNNNNTGG 1 cut(s) 1176
XapI RAATTY 3 cut(s) 354, 659, 1514
XceI RCATGY 1 cut(s) 493
XmnI GAANNNNTTC 1 cut(s) 923
XspI CTAG 6 cut(s) 146, 603, 671, 1205, 1343, 1616
Zsp2I ATGCAT 4 cut(s) 495, 562, 1177, 1559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.