FvH4_6g44544

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000768
Physical Location & Seq
Forward (+)
34312477 .. 34314122
1646 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g44544.t1

Sequence Viewer

Length: 1236 bp
ATGCTGAGTCTGTACGAAGCTTCATTCCTTGGTTTTGAAGGAGAAACCCTCTTGGATGAGGCCCTTGCATTCACCAGCACGCACCTAAAGAACCTCAGCAGCAGGTTACTTAATACTCACGGCAGAAATGTATTAGAGCAAGTGAGTCATGCATTGGAGATGCCATTGCACCACAGAATGCAAAGATTAGAAGCTAGATGGTATATTGAGGTATATAATAAAAGGCAAGATGCAAATCAGATGCTACTTGAATTTGCCAAGCTAGATTACAATGTGGTGCAACAAACATACCAAAGTGAACTTAAAGACTTATCAAGATGGTGGAAGGATATGGGGTTAGCAAAGAAGTTGTCCTTCAGCAGAGACAGATTAATGGAGTGCTTCTTTTGGACAGTTGGTATATTGTCTGAACCTCAATTCAGCAATCTCAGAAAAGGGATAACTAAAGTCAGTGTTCTAATATGCACAATTGATGATGTCTATGATGTTTATGGTACTTTGGATAAGTTGGAGCTATTCACATCTGTTGTTGAAAGATGGGATGTGAATGCTATGGAAATTCTCCAAGACTACCAGCTGGAGCTCTCTTTCCTTGCTCTCTACAACACTGTGAATGAAATCGCTTATGAAACTTTGAAGGAGCACGGAGTGGACGTCCTTCCTTACTTGACAAAAGCGTGGGCTGATATGTGCAAAGCTTTCTTAAGGGAGGCAGAGTGGCGTCACAACGAGTACACACCCACATTTGAAGAATATATTGCCAATGCATGGATATCAGTGTCCGGTGTGGTCATTTTAGTCCATACTTACTTTCTACTGAATCAAAATATCTCAGGTGGAGCACTTGAATGCTTAGAGAATCACCATGATCTCTTGCGTTGGCCGTCTCTTATTTTTCGGCTCTCAAACGATTTGGCTACTTCAGAGGCAGAACTAGAGAGAGGTGAAACTGCAACTTCAATATCCTGCCTCAAACGTGGAAGTAGTGTTTGTGATGTGGAATCAGCTCGCAAATATATTAGTAATTTGATCGAGAATAGTTGGAAGAAGATGAACAAAGATGGACAACTATTTGGTGCTAATAGTGCTTCTTCTCCATTTACCAAGGAATTTGAAGCAGCAGCAACAAACCTTGCTCGGATTGCCCAATGCATATACCAATATGGAGACGGGATCAGTGCCCCGGACAAAATAGTCAAGAACCGGATGCTAGCAGTGATTCTACAATCCGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

412

Amino Acids

47.2

Weight (kDa)

5.34

Isoelectric Point (pI)

39.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 1 - 52 2.3e-11 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 109 - 350 3.8e-83 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 149 - 350 5.1e-55 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1193
AatII GACGTC 1 cut(s) 657
Acc36I ACCTGC 1 cut(s) 93
AccB7I CCANNNNNTGG 1 cut(s) 768
AclWI GGATC 1 cut(s) 1181
AcoI YGGCCR 1 cut(s) 881
AcsI RAATTY 3 cut(s) 251, 558, 1109
AcuI CTGAAG 2 cut(s) 340, 906
AcyI GRCGYC 2 cut(s) 654, 721
AdeI CACNNNGTG 1 cut(s) 649
AfaI GTAC 3 cut(s) 14, 496, 734
AfiI CCNNNNNNNGG 1 cut(s) 768
AflII CTTAAG 1 cut(s) 703
AgsI TTSAA 8 cut(s) 38, 251, 533, 637, 749, 848, 960, 1115
AluBI AGCT 8 cut(s) 20, 194, 262, 514, 577, 583, 698, 1007
AluI AGCT 8 cut(s) 20, 194, 262, 514, 577, 583, 698, 1007
Alw21I GWGCWC 3 cut(s) 585, 645, 844
Alw26I GTCTC 3 cut(s) 357, 891, 1161
AlwI GGATC 1 cut(s) 1181
AoxI GGCC 2 cut(s) 60, 881
ApeKI GCWGC 3 cut(s) 99, 1118, 1121
ApoI RAATTY 3 cut(s) 251, 558, 1109
ArsI GACNNNNNNTTYG 2 cut(s) 335, 367
AseI ATTAAT 1 cut(s) 371
AspS9I GGNCC 1 cut(s) 61
AsuC2I CCSGG 1 cut(s) 1184
AsuHPI GGTGA 3 cut(s) 64, 854, 956
AsuNHI GCTAGC 1 cut(s) 1210
BaeGI GKGCMC 1 cut(s) 1183
BanII GRGCYC 1 cut(s) 585
Bbv12I GWGCWC 3 cut(s) 585, 645, 844
BbvCI CCTCAGC 1 cut(s) 95
BbvI GCAGC 3 cut(s) 111, 1130, 1133
BccI CCATC 4 cut(s) 192, 312, 531, 1055
BceAI ACGGC 2 cut(s) 136, 868
BcnI CCSGG 1 cut(s) 1184
BcoDI GTCTC 3 cut(s) 357, 891, 1161
BfaI CTAG 4 cut(s) 195, 263, 935, 1211
BfrI CTTAAG 1 cut(s) 703
BfuAI ACCTGC 1 cut(s) 93
BisI GCNGC 3 cut(s) 100, 1119, 1122
BlsI GCNGC 3 cut(s) 101, 1120, 1123
Bme1390I CCNGG 1 cut(s) 1184
BmgT120I GGNCC 1 cut(s) 61
BmrFI CCNGG 1 cut(s) 1184
BmsI GCATC 4 cut(s) 150, 220, 231, 1197
BmtI GCTAGC 1 cut(s) 1214
BplI GAGNNNNNCTC 2 cut(s) 33, 65
BpmI CTGGAG 1 cut(s) 599
Bpu10I CCTNAGC 1 cut(s) 95
BpuMI CCSGG 1 cut(s) 1184
BsaBI GATNNNNATC 1 cut(s) 234
BsaHI GRCGYC 2 cut(s) 654, 721
BsaJI CCNNGG 3 cut(s) 28, 1104, 1182
BsaWI WCCGGW 2 cut(s) 782, 1203
BsaXI ACNNNNNCTCC 4 cut(s) 639, 669, 701, 731
Bsc4I CCNNNNNNNGG 1 cut(s) 768
Bse3DI GCAATG 1 cut(s) 164
Bse8I GATNNNNATC 1 cut(s) 234
BseDI CCNNGG 3 cut(s) 28, 1104, 1182
BseGI GGATG 3 cut(s) 61, 547, 1212
BseJI GATNNNNATC 1 cut(s) 234
BseLI CCNNNNNNNGG 1 cut(s) 768
BseMI GCAATG 1 cut(s) 164
BseMII CTCAG 3 cut(s) 109, 442, 846
BseSI GKGCMC 1 cut(s) 1183
BseXI GCAGC 3 cut(s) 111, 1130, 1133
BshFI GGCC 2 cut(s) 62, 883
BsiHKAI GWGCWC 3 cut(s) 585, 645, 844
BsiSI CCGG 3 cut(s) 783, 1184, 1204
BslI CCNNNNNNNGG 1 cut(s) 768
BsmAI GTCTC 3 cut(s) 357, 891, 1161
BsmBI CGTCTC 2 cut(s) 891, 1161
BsmI GAATGC 4 cut(s) 68, 183, 553, 854
BsnI GGCC 2 cut(s) 62, 883
Bsp1286I GDGCHC 4 cut(s) 585, 645, 844, 1183
Bsp143I GATC 3 cut(s) 868, 1029, 1173
BspANI GGCC 2 cut(s) 62, 883
BspCNI CTCAG 3 cut(s) 108, 441, 845
BspMI ACCTGC 1 cut(s) 93
BspOI GCTAGC 1 cut(s) 1214
BspPI GGATC 1 cut(s) 1181
BspTI CTTAAG 1 cut(s) 703
BsrDI GCAATG 1 cut(s) 164
BssECI CCNNGG 3 cut(s) 28, 1104, 1182
BssMI GATC 3 cut(s) 868, 1029, 1173
BssNI GRCGYC 2 cut(s) 654, 721
BssT1I CCWWGG 2 cut(s) 28, 1104
Bst4CI ACNGT 2 cut(s) 394, 610
BstACI GRCGYC 2 cut(s) 654, 721
BstAFI CTTAAG 1 cut(s) 703
BstC8I GCNNGC 3 cut(s) 80, 1009, 1212
BstDEI CTNAG 5 cut(s) 5, 95, 428, 832, 853
BstF5I GGATG 3 cut(s) 61, 547, 1212
BstKTI GATC 3 cut(s) 871, 1032, 1176
BstMAI GTCTC 3 cut(s) 357, 891, 1161
BstMBI GATC 3 cut(s) 868, 1029, 1173
BstMWI GCNNNNNNNGC 2 cut(s) 1085, 1142
BstSCI CCNGG 1 cut(s) 1182
BstSLI GKGCMC 1 cut(s) 1183
BstV1I GCAGC 3 cut(s) 111, 1130, 1133
BsuRI GGCC 2 cut(s) 62, 883
BtsCI GGATG 3 cut(s) 61, 547, 1212
BtsI GCAGTG 1 cut(s) 1221
BtsIMutI CAGTG 5 cut(s) 457, 606, 783, 1183, 1221
BveI ACCTGC 1 cut(s) 93
Cac8I GCNNGC 3 cut(s) 80, 1009, 1212
Cfr13I GGNCC 1 cut(s) 61
CseI GACGC 1 cut(s) 710
Csp6I GTAC 3 cut(s) 13, 495, 733
CviAII CATG 3 cut(s) 149, 768, 866
CviQI GTAC 3 cut(s) 13, 495, 733
DdeI CTNAG 5 cut(s) 5, 95, 428, 832, 853
DpnI GATC 3 cut(s) 870, 1031, 1175
DpnII GATC 3 cut(s) 868, 1029, 1173
DraIII CACNNNGTG 1 cut(s) 649
DrdI GACNNNNNNGTC 1 cut(s) 1193
DseDI GACNNNNNNGTC 1 cut(s) 1193
EaeI YGGCCR 1 cut(s) 881
Ecl136II GAGCTC 1 cut(s) 583
Eco130I CCWWGG 2 cut(s) 28, 1104
Eco24I GRGCYC 1 cut(s) 585
Eco32I GATATC 1 cut(s) 774
Eco53kI GAGCTC 1 cut(s) 583
Eco57I CTGAAG 2 cut(s) 340, 906
EcoICRI GAGCTC 1 cut(s) 583
EcoO109I RGGNCCY 1 cut(s) 61
EcoRV GATATC 1 cut(s) 774
EcoT14I CCWWGG 2 cut(s) 28, 1104
EcoT22I ATGCAT 3 cut(s) 154, 769, 1154
EcoT38I GRGCYC 1 cut(s) 585
ErhI CCWWGG 2 cut(s) 28, 1104
Esp3I CGTCTC 2 cut(s) 891, 1161
FaeI CATG 3 cut(s) 152, 771, 869
FalI AAGNNNNNCTT 2 cut(s) 338, 370
FatI CATG 3 cut(s) 148, 767, 865
Fnu4HI GCNGC 3 cut(s) 100, 1119, 1122
FokI GGATG 3 cut(s) 68, 554, 1219
FriOI GRGCYC 1 cut(s) 585
Fsp4HI GCNGC 3 cut(s) 100, 1119, 1122
FspBI CTAG 4 cut(s) 195, 263, 935, 1211
GluI GCNGC 3 cut(s) 100, 1119, 1122
GsuI CTGGAG 1 cut(s) 599
HaeIII GGCC 2 cut(s) 62, 883
HapII CCGG 3 cut(s) 783, 1184, 1204
HgaI GACGC 1 cut(s) 710
Hin1I GRCGYC 2 cut(s) 654, 721
Hin1II CATG 3 cut(s) 152, 771, 869
HindIII AAGCTT 2 cut(s) 18, 696
HinfI GANTC 6 cut(s) 7, 145, 820, 859, 1001, 1219
HpaII CCGG 3 cut(s) 783, 1184, 1204
HphI GGTGA 3 cut(s) 64, 854, 956
Hpy166II GTNNAC 3 cut(s) 299, 652, 735
Hpy188I TCNGA 5 cut(s) 240, 409, 431, 925, 1140
Hpy188III TCNNGA 3 cut(s) 315, 1033, 1198
Hpy8I GTNNAC 3 cut(s) 299, 652, 735
HpyAV CCTTC 5 cut(s) 32, 319, 364, 631, 668
HpyCH4III ACNGT 2 cut(s) 394, 610
HpyCH4IV ACGT 2 cut(s) 654, 976
HpyF10VI GCNNNNNNNGC 2 cut(s) 1085, 1142
HpyF3I CTNAG 5 cut(s) 5, 95, 428, 832, 853
HpySE526I ACGT 2 cut(s) 654, 976
Hsp92I GRCGYC 2 cut(s) 654, 721
Hsp92II CATG 3 cut(s) 152, 771, 869
Kzo9I GATC 3 cut(s) 868, 1029, 1173
LmnI GCTCC 4 cut(s) 511, 580, 640, 839
LpnPI CCDG 9 cut(s) 88, 88, 563, 587, 796, 819, 979, 1197, 1217
Lsp1109I GCAGC 3 cut(s) 111, 1130, 1133
LweI GCATC 4 cut(s) 150, 220, 231, 1197
MaeI CTAG 4 cut(s) 195, 263, 935, 1211
MaeII ACGT 2 cut(s) 654, 976
MaeIII GTNAC 2 cut(s) 105, 722
MalI GATC 3 cut(s) 870, 1031, 1175
MboI GATC 3 cut(s) 868, 1029, 1173
MboII GAAGA 4 cut(s) 761, 1057, 1060, 1083
MfeI CAATTG 1 cut(s) 468
MhlI GDGCHC 4 cut(s) 585, 645, 844, 1183
MluCI AATT 6 cut(s) 251, 416, 468, 558, 1024, 1109
MlyI GAGTC 2 cut(s) 16, 154
MmeI TCCRAC 2 cut(s) 489, 1022
MnlI CCTC 9 cut(s) 52, 59, 104, 202, 423, 703, 919, 935, 980
Mph1103I ATGCAT 3 cut(s) 154, 769, 1154
MseI TTAA 5 cut(s) 111, 303, 371, 704, 1234
MslI CAYNNNNRTG 1 cut(s) 847
MspA1I CMGCKG 1 cut(s) 577
MspCI CTTAAG 1 cut(s) 703
MspI CCGG 3 cut(s) 783, 1184, 1204
MspR9I CCNGG 1 cut(s) 1184
MunI CAATTG 1 cut(s) 468
Mva1269I GAATGC 4 cut(s) 68, 183, 553, 854
MwoI GCNNNNNNNGC 2 cut(s) 1085, 1142
NciI CCSGG 1 cut(s) 1184
NdeII GATC 3 cut(s) 868, 1029, 1173
NheI GCTAGC 1 cut(s) 1210
NlaIII CATG 3 cut(s) 152, 771, 869
NmuCI GTSAC 1 cut(s) 722
NsiI ATGCAT 3 cut(s) 154, 769, 1154
PcsI WCGNNNNNNNCGW 1 cut(s) 651
PctI GAATGC 4 cut(s) 68, 183, 553, 854
PfeI GAWTC 4 cut(s) 820, 859, 1001, 1219
PflMI CCANNNNNTGG 1 cut(s) 768
PkrI GCNGC 3 cut(s) 101, 1120, 1123
PleI GAGTC 2 cut(s) 15, 153
PpsI GAGTC 2 cut(s) 15, 153
PshBI ATTAAT 1 cut(s) 371
Psp124BI GAGCTC 1 cut(s) 585
PspPI GGNCC 1 cut(s) 61
PvuII CAGCTG 1 cut(s) 577
RsaI GTAC 3 cut(s) 14, 496, 734
RsaNI GTAC 3 cut(s) 13, 495, 733
RseI CAYNNNNRTG 1 cut(s) 847
SacI GAGCTC 1 cut(s) 585
SaqAI TTAA 5 cut(s) 111, 303, 371, 704, 1234
SatI GCNGC 3 cut(s) 100, 1119, 1122
Sau3AI GATC 3 cut(s) 868, 1029, 1173
Sau96I GGNCC 1 cut(s) 61
SchI GAGTC 2 cut(s) 16, 154
ScrFI CCNGG 1 cut(s) 1184
SduI GDGCHC 4 cut(s) 585, 645, 844, 1183
SfaNI GCATC 4 cut(s) 150, 220, 231, 1197
SmiMI CAYNNNNRTG 1 cut(s) 847
SmlI CTYRAG 1 cut(s) 703
SmoI CTYRAG 1 cut(s) 703
Sse9I AATT 6 cut(s) 251, 416, 468, 558, 1024, 1109
SspMI CTAG 4 cut(s) 195, 263, 935, 1211
SstI GAGCTC 1 cut(s) 585
StyD4I CCNGG 1 cut(s) 1182
StyI CCWWGG 2 cut(s) 28, 1104
TaaI ACNGT 2 cut(s) 394, 610
TaiI ACGT 2 cut(s) 657, 979
TaqI TCGA 1 cut(s) 1032
TasI AATT 6 cut(s) 251, 416, 468, 558, 1024, 1109
TatI WGTACW 1 cut(s) 732
TfiI GAWTC 4 cut(s) 820, 859, 1001, 1219
Tru1I TTAA 5 cut(s) 111, 303, 371, 704, 1234
Tru9I TTAA 5 cut(s) 111, 303, 371, 704, 1234
TscAI CASTG 5 cut(s) 457, 613, 783, 1183, 1221
TseFI GTSAC 1 cut(s) 722
TseI GCWGC 3 cut(s) 99, 1118, 1121
Tsp45I GTSAC 1 cut(s) 722
TspDTI ATGAA 4 cut(s) 12, 630, 642, 1067
TspGWI ACGGA 2 cut(s) 660, 1219
TspRI CASTG 5 cut(s) 457, 613, 783, 1183, 1221
Van91I CCANNNNNTGG 1 cut(s) 768
Vha464I CTTAAG 1 cut(s) 703
VspI ATTAAT 1 cut(s) 371
XapI RAATTY 3 cut(s) 251, 558, 1109
XspI CTAG 4 cut(s) 195, 263, 935, 1211
ZraI GACGTC 1 cut(s) 655
Zsp2I ATGCAT 3 cut(s) 154, 769, 1154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.