RLG00000023190

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000768
Physical Location & Seq
Forward (+)
19701773 .. 19707909
6137 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023190

Sequence Viewer

Length: 1713 bp
ATGTCTACCCAATGCTTAGCAAACAGCGGTAGCCCTGCTGCTCAAACTTCACATCTGGATGTTAAAAGACTGACAACAAATTACAAGCCAAGTATTTGGAGTCACGATTTCCTTCAGTCGTTACAGATTGATGATCGTAATCATGAAGAAGTACACAAAGATAATAGGTGGAAGCTGATCGAGGAGGATCTGAAAAATATGATTGAAGCAGAGTCACTAGAGACTACACTTGAATTGATTGATGACATCCAACGATTAGGTTTGGGACACCGATTCGAGGCTAGTATAACAGAAGCCCTTGATAAAGTTTTGAAGAATCTTGACCAAATAACAGACGAGGATACTCTAAGTCTACACTTCACTGCTCTTAGCTTCAGACTCCTTAGACAACATGGGTTTCAAGTCTCCCAAGATGTTTTCAAAATTTTCACGGATTGCGACAACAGCTTCAAGGATTGCCTTTGCAAAGATGTCAAAGGAATGTTGAGTCTATACGAAGCTTCATTCCTTGGTATTGAAGGAGAAACCATCTTGGATGAGGCCCTTGCATTCACCAGCATGCACCTAAAGAACCTCAGCAGATTGCATGTTACTCAAGGCAAATGTGTATTAGAGCAAGTGAGTCATGCATTGGAGATGCCACTGCACCATAGAATGCAAAGACTAGAGGCTAGATGGTATATTGAGGCATACAGTAAAAAGGCAGATGCAAATCAGGTGCTACTTGAATTTGCCAAGCTAGATTACAATGTGGTGCAACAAACATACCAAAGAGATCTTAAAGACATTTCAAGGTGGTGGAAGGATATGGGGTTAGCAAAGAAGTTATCCTTTAGCAGAGACAGACTGATGGAGTTGTTCTTTTGGTCAGTTGGTATAGTGTTTGAACCTCAACTCAGCAATCTTAGAAAAGGGATAACTAAAGTCAGTGCTCTAATAACCACAATTGATGATGTCTATGATGTTTATGGCGCTTTGGATGAATTAGAGCTATTCACATCTGTTGTTGAAAGATGGGATGTGAATGCTGTGGAGATTCTTTCAGACTACCAGCTGAAGCTCTGTTTCCTTGCTCTCTATAACACTGTGAATGAAATGACTTATGAAACTTTGAAGGAGCAAGGAGTGAACGTCCTTCCGTACATGAGAAAAGCTTGGGCAGATATGTGCAAAACTTGGTTAACGGAGGCAAAGTGGCGTCACAACAAGTACACACCTACATTTGAAGAATATCTTGCCAATGCATGGATATCAGTGTCTGGGGTGGTCATTCTAGTCCATACCTACTTTCTACTTAATCAAAATATCTCAGATGAAGCACTTAAATGCATAGAGAATCACCATGATCTCTTGAGTTGGCCGTCTCTTATTTTTCGGCTCTCAAATGATTTGGTTACTTCGAAGGCAGAACTAGAGAGAGGTGAAACTGCAACTTCAATATCTTGCATTAGACGTGATGGTGTTGTTTCTGATGAGGAATCTGCTTGCAAATATATTAGTAATTTGATTGAGAATAGTTGGAAGAAGATGAACAAAGATGGACTATTATTTGGTACTAGTAGAGCTTCTTCTACATTCACAAAGGAATTTGTAGCAGCAGCAACGAACCTTGCTCGAATTGCCCAATGCATTTACCAATATGGAGATGGGATTGGTGCCCCGGATAAAAGAGTAAAGAACCAGATCCTTGCAGTGATTGTACAACCCGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

571

Amino Acids

65.47

Weight (kDa)

5.48

Isoelectric Point (pI)

35.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 32 - 211 2.7e-50 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 268 - 509 6e-86 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 308 - 509 1.8e-56 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1655
AccB7I CCANNNNNTGG 1 cut(s) 1245
AccI GTMKAC 2 cut(s) 5, 352
AciI CCGC 1 cut(s) 27
AclWI GGATC 2 cut(s) 195, 1678
AcoI YGGCCR 1 cut(s) 1358
AcsI RAATTY 3 cut(s) 423, 728, 1586
AcuI CTGAAG 3 cut(s) 98, 358, 1076
AcyI GRCGYC 1 cut(s) 1198
AfaI GTAC 5 cut(s) 153, 1142, 1211, 1555, 1701
AfiI CCNNNNNNNGG 2 cut(s) 277, 1245
AhlI ACTAGT 1 cut(s) 1556
AjiI CACGTC 1 cut(s) 1454
Alw21I GWGCWC 1 cut(s) 934
Alw26I GTCTC 4 cut(s) 215, 409, 834, 1368
AlwI GGATC 2 cut(s) 195, 1678
AlwNI CAGNNNCTG 1 cut(s) 1259
AoxI GGCC 2 cut(s) 540, 1358
ApeKI GCWGC 3 cut(s) 38, 1595, 1598
ApoI RAATTY 3 cut(s) 423, 728, 1586
AspLEI GCGC 1 cut(s) 974
AspS9I GGNCC 1 cut(s) 541
AsuC2I CCSGG 1 cut(s) 1661
AsuHPI GGTGA 3 cut(s) 544, 1331, 1433
AsuII TTCGAA 1 cut(s) 1400
BaeGI GKGCMC 1 cut(s) 1660
BanI GGYRCC 1 cut(s) 1655
BarI GAAGNNNNNNTAC 2 cut(s) 1552, 1584
Bbv12I GWGCWC 1 cut(s) 934
BbvCI CCTCAGC 1 cut(s) 575
BbvI GCAGC 3 cut(s) 25, 1607, 1610
BccI CCATC 7 cut(s) 536, 669, 844, 1008, 1451, 1532, 1640
BceAI ACGGC 1 cut(s) 1345
BciVI GTATCC 1 cut(s) 334
BcnI CCSGG 1 cut(s) 1661
BcoDI GTCTC 4 cut(s) 215, 409, 834, 1368
BcuI ACTAGT 1 cut(s) 1556
BfaI CTAG 8 cut(s) 218, 282, 665, 672, 740, 1274, 1412, 1557
BfoI RGCGCY 1 cut(s) 975
BfuI GTATCC 1 cut(s) 334
BglII AGATCT 1 cut(s) 775
BisI GCNGC 3 cut(s) 39, 1596, 1599
BlpI GCTNAGC 1 cut(s) 16
BlsI GCNGC 3 cut(s) 40, 1597, 1600
Bme1390I CCNGG 1 cut(s) 1661
BmgBI CACGTC 1 cut(s) 1454
BmgT120I GGNCC 1 cut(s) 541
BmiI GGNNCC 1 cut(s) 1657
BmrFI CCNGG 1 cut(s) 1661
BmsI GCATC 2 cut(s) 627, 697
Bpu10I CCTNAGC 1 cut(s) 575
Bpu1102I GCTNAGC 1 cut(s) 16
Bpu14I TTCGAA 1 cut(s) 1400
BpuEI CTTGAG 2 cut(s) 579, 1372
BpuMI CCSGG 1 cut(s) 1661
BsaBI GATNNNNATC 2 cut(s) 138, 711
BsaHI GRCGYC 1 cut(s) 1198
BsaJI CCNNGG 2 cut(s) 508, 1659
BsaXI ACNNNNNCTCC 4 cut(s) 1116, 1146, 1178, 1208
Bsc4I CCNNNNNNNGG 2 cut(s) 277, 1245
Bse8I GATNNNNATC 2 cut(s) 138, 711
BseDI CCNNGG 2 cut(s) 508, 1659
BseGI GGATG 5 cut(s) 64, 246, 541, 985, 1024
BseJI GATNNNNATC 2 cut(s) 138, 711
BseLI CCNNNNNNNGG 2 cut(s) 277, 1245
BseMII CTCAG 3 cut(s) 589, 910, 1323
BseRI GAGGAG 1 cut(s) 197
BseSI GKGCMC 1 cut(s) 1660
BseXI GCAGC 3 cut(s) 25, 1607, 1610
BsgI GTGCAG 1 cut(s) 629
BshFI GGCC 2 cut(s) 542, 1360
BshNI GGYRCC 1 cut(s) 1655
BsiHKAI GWGCWC 1 cut(s) 934
BsiSI CCGG 1 cut(s) 1661
BslFI GGGAC 1 cut(s) 279
BslI CCNNNNNNNGG 2 cut(s) 277, 1245
BsmAI GTCTC 4 cut(s) 215, 409, 834, 1368
BsmBI CGTCTC 1 cut(s) 1368
BsmFI GGGAC 1 cut(s) 279
BsmI GAATGC 3 cut(s) 548, 660, 1030
BsnI GGCC 2 cut(s) 542, 1360
Bsp119I TTCGAA 1 cut(s) 1400
Bsp1286I GDGCHC 2 cut(s) 934, 1660
Bsp1407I TGTACA 1 cut(s) 1699
Bsp143I GATC 6 cut(s) 133, 177, 187, 775, 1345, 1683
Bsp1720I GCTNAGC 1 cut(s) 16
BspACI CCGC 1 cut(s) 27
BspANI GGCC 2 cut(s) 542, 1360
BspCNI CTCAG 3 cut(s) 588, 909, 1322
BspHI TCATGA 1 cut(s) 142
BspLI GGNNCC 1 cut(s) 1657
BspPI GGATC 2 cut(s) 195, 1678
BspT104I TTCGAA 1 cut(s) 1400
BspT107I GGYRCC 1 cut(s) 1655
BsrGI TGTACA 1 cut(s) 1699
BssECI CCNNGG 2 cut(s) 508, 1659
BssMI GATC 6 cut(s) 133, 177, 187, 775, 1345, 1683
BssNI GRCGYC 1 cut(s) 1198
BssT1I CCWWGG 1 cut(s) 508
Bst4CI ACNGT 2 cut(s) 695, 1087
BstACI GRCGYC 1 cut(s) 1198
BstAUI TGTACA 1 cut(s) 1699
BstBI TTCGAA 1 cut(s) 1400
BstC8I GCNNGC 2 cut(s) 560, 1486
BstDEI CTNAG 8 cut(s) 16, 347, 368, 383, 575, 896, 905, 1309
BstF5I GGATG 5 cut(s) 64, 246, 541, 985, 1024
BstH2I RGCGCY 1 cut(s) 975
BstHHI GCGC 1 cut(s) 974
BstKTI GATC 6 cut(s) 136, 180, 190, 778, 1348, 1686
BstMAI GTCTC 4 cut(s) 215, 409, 834, 1368
BstMBI GATC 6 cut(s) 133, 177, 187, 775, 1345, 1683
BstMWI GCNNNNNNNGC 2 cut(s) 444, 1619
BstNSI RCATGY 2 cut(s) 562, 590
BstSCI CCNGG 1 cut(s) 1659
BstSLI GKGCMC 1 cut(s) 1660
BstV1I GCAGC 3 cut(s) 25, 1607, 1610
BstX2I RGATCY 3 cut(s) 187, 775, 1683
BstXI CCANNNNNNTGG 1 cut(s) 96
BstYI RGATCY 3 cut(s) 187, 775, 1683
BsuI GTATCC 1 cut(s) 334
BsuRI GGCC 2 cut(s) 542, 1360
BtrI CACGTC 1 cut(s) 1454
BtsCI GGATG 5 cut(s) 64, 246, 541, 985, 1024
BtsI GCAGTG 3 cut(s) 360, 641, 1698
BtsIMutI CAGTG 6 cut(s) 360, 641, 934, 1083, 1260, 1698
Cac8I GCNNGC 2 cut(s) 560, 1486
CaiI CAGNNNCTG 1 cut(s) 1259
CciI TCATGA 1 cut(s) 142
CfoI GCGC 1 cut(s) 974
Cfr13I GGNCC 1 cut(s) 541
CseI GACGC 1 cut(s) 1187
Csp6I GTAC 5 cut(s) 152, 1141, 1210, 1554, 1700
CviAII CATG 8 cut(s) 143, 392, 559, 587, 626, 1144, 1245, 1343
CviQI GTAC 5 cut(s) 152, 1141, 1210, 1554, 1700
DdeI CTNAG 8 cut(s) 16, 347, 368, 383, 575, 896, 905, 1309
DpnI GATC 6 cut(s) 135, 179, 189, 777, 1347, 1685
DpnII GATC 6 cut(s) 133, 177, 187, 775, 1345, 1683
EaeI YGGCCR 1 cut(s) 1358
Eco130I CCWWGG 1 cut(s) 508
Eco32I GATATC 1 cut(s) 1251
Eco57I CTGAAG 3 cut(s) 98, 358, 1076
EcoO109I RGGNCCY 1 cut(s) 541
EcoRV GATATC 1 cut(s) 1251
EcoT14I CCWWGG 1 cut(s) 508
EcoT22I ATGCAT 4 cut(s) 631, 1246, 1331, 1631
ErhI CCWWGG 1 cut(s) 508
Esp3I CGTCTC 1 cut(s) 1368
FaeI CATG 8 cut(s) 146, 395, 562, 590, 629, 1147, 1248, 1346
FalI AAGNNNNNCTT 4 cut(s) 815, 847, 1218, 1250
FaqI GGGAC 1 cut(s) 279
FatI CATG 8 cut(s) 142, 391, 558, 586, 625, 1143, 1244, 1342
FblI GTMKAC 2 cut(s) 5, 352
Fnu4HI GCNGC 3 cut(s) 39, 1596, 1599
FokI GGATG 5 cut(s) 71, 233, 548, 992, 1031
Fsp4HI GCNGC 3 cut(s) 39, 1596, 1599
FspBI CTAG 8 cut(s) 218, 282, 665, 672, 740, 1274, 1412, 1557
GlaI GCGC 1 cut(s) 973
GluI GCNGC 3 cut(s) 39, 1596, 1599
HaeII RGCGCY 1 cut(s) 975
HaeIII GGCC 2 cut(s) 542, 1360
HapII CCGG 1 cut(s) 1661
HgaI GACGC 1 cut(s) 1187
HhaI GCGC 1 cut(s) 974
Hin1I GRCGYC 1 cut(s) 1198
Hin1II CATG 8 cut(s) 146, 395, 562, 590, 629, 1147, 1248, 1346
Hin6I GCGC 1 cut(s) 972
HinP1I GCGC 1 cut(s) 972
HincII GTYRAC 1 cut(s) 1182
HindII GTYRAC 1 cut(s) 1182
HindIII AAGCTT 2 cut(s) 498, 1152
HpaI GTTAAC 1 cut(s) 1182
HpaII CCGG 1 cut(s) 1661
HphI GGTGA 3 cut(s) 544, 1331, 1433
Hpy166II GTNNAC 6 cut(s) 6, 154, 353, 1129, 1182, 1212
Hpy188I TCNGA 5 cut(s) 192, 377, 1045, 1312, 1471
Hpy188III TCNNGA 5 cut(s) 56, 104, 143, 320, 1351
Hpy8I GTNNAC 6 cut(s) 6, 154, 353, 1129, 1182, 1212
HpyAV CCTTC 6 cut(s) 122, 512, 796, 1108, 1145, 1396
HpyCH4III ACNGT 2 cut(s) 695, 1087
HpyCH4IV ACGT 2 cut(s) 1131, 1453
HpyF10VI GCNNNNNNNGC 2 cut(s) 444, 1619
HpyF3I CTNAG 8 cut(s) 16, 347, 368, 383, 575, 896, 905, 1309
HpySE526I ACGT 2 cut(s) 1131, 1453
Hsp92I GRCGYC 1 cut(s) 1198
Hsp92II CATG 8 cut(s) 146, 395, 562, 590, 629, 1147, 1248, 1346
HspAI GCGC 1 cut(s) 972
KspAI GTTAAC 1 cut(s) 1182
Kzo9I GATC 6 cut(s) 133, 177, 187, 775, 1345, 1683
LmnI GCTCC 1 cut(s) 1117
LpnPI CCDG 8 cut(s) 41, 48, 568, 701, 1064, 1245, 1674, 1694
Lsp1109I GCAGC 3 cut(s) 25, 1607, 1610
LweI GCATC 2 cut(s) 627, 697
MaeI CTAG 8 cut(s) 218, 282, 665, 672, 740, 1274, 1412, 1557
MaeII ACGT 2 cut(s) 1131, 1453
MaeIII GTNAC 6 cut(s) 101, 120, 213, 589, 1199, 1393
MalI GATC 6 cut(s) 135, 179, 189, 777, 1347, 1685
MboI GATC 6 cut(s) 133, 177, 187, 775, 1345, 1683
MboII GAAGA 6 cut(s) 158, 325, 1238, 1534, 1537, 1560
MfeI CAATTG 1 cut(s) 945
MflI RGATCY 3 cut(s) 187, 775, 1683
MhlI GDGCHC 2 cut(s) 934, 1660
MluCI AATT 9 cut(s) 79, 233, 423, 728, 945, 983, 1501, 1586, 1617
MlyI GAGTC 5 cut(s) 109, 221, 372, 496, 631
MmeI TCCRAC 2 cut(s) 274, 1499
Mph1103I ATGCAT 4 cut(s) 631, 1246, 1331, 1631
MseI TTAA 6 cut(s) 63, 780, 1181, 1296, 1323, 1711
MslI CAYNNNNRTG 3 cut(s) 57, 557, 1324
MspA1I CMGCKG 2 cut(s) 27, 1054
MspI CCGG 1 cut(s) 1661
MspR9I CCNGG 1 cut(s) 1661
MunI CAATTG 1 cut(s) 945
Mva1269I GAATGC 3 cut(s) 548, 660, 1030
MwoI GCNNNNNNNGC 2 cut(s) 444, 1619
NciI CCSGG 1 cut(s) 1661
NdeII GATC 6 cut(s) 133, 177, 187, 775, 1345, 1683
NlaIII CATG 8 cut(s) 146, 395, 562, 590, 629, 1147, 1248, 1346
NlaIV GGNNCC 1 cut(s) 1657
NmuCI GTSAC 3 cut(s) 101, 213, 1199
NsiI ATGCAT 4 cut(s) 631, 1246, 1331, 1631
NspI RCATGY 2 cut(s) 562, 590
NspV TTCGAA 1 cut(s) 1400
PaeI GCATGC 1 cut(s) 562
PagI TCATGA 1 cut(s) 142
PctI GAATGC 3 cut(s) 548, 660, 1030
PfeI GAWTC 5 cut(s) 273, 316, 1036, 1336, 1478
PflMI CCANNNNNTGG 1 cut(s) 1245
PkrI GCNGC 3 cut(s) 40, 1597, 1600
PleI GAGTC 5 cut(s) 108, 220, 372, 495, 630
PpsI GAGTC 5 cut(s) 108, 220, 372, 495, 630
PspN4I GGNNCC 1 cut(s) 1657
PspPI GGNCC 1 cut(s) 541
PstNI CAGNNNCTG 1 cut(s) 1259
PsuI RGATCY 3 cut(s) 187, 775, 1683
PvuII CAGCTG 1 cut(s) 1054
RsaI GTAC 5 cut(s) 153, 1142, 1211, 1555, 1701
RsaNI GTAC 5 cut(s) 152, 1141, 1210, 1554, 1700
RseI CAYNNNNRTG 3 cut(s) 57, 557, 1324
SaqAI TTAA 6 cut(s) 63, 780, 1181, 1296, 1323, 1711
SatI GCNGC 3 cut(s) 39, 1596, 1599
Sau3AI GATC 6 cut(s) 133, 177, 187, 775, 1345, 1683
Sau96I GGNCC 1 cut(s) 541
SchI GAGTC 5 cut(s) 109, 221, 372, 496, 631
ScrFI CCNGG 1 cut(s) 1661
SduI GDGCHC 2 cut(s) 934, 1660
SfaNI GCATC 2 cut(s) 627, 697
SfuI TTCGAA 1 cut(s) 1400
SmiMI CAYNNNNRTG 3 cut(s) 57, 557, 1324
SmlI CTYRAG 2 cut(s) 594, 1351
SmoI CTYRAG 2 cut(s) 594, 1351
SpeI ACTAGT 1 cut(s) 1556
SphI GCATGC 1 cut(s) 562
Sse9I AATT 9 cut(s) 79, 233, 423, 728, 945, 983, 1501, 1586, 1617
SsiI CCGC 1 cut(s) 27
SspMI CTAG 8 cut(s) 218, 282, 665, 672, 740, 1274, 1412, 1557
StyD4I CCNGG 1 cut(s) 1659
StyI CCWWGG 1 cut(s) 508
TaaI ACNGT 2 cut(s) 695, 1087
TaiI ACGT 2 cut(s) 1134, 1456
TaqI TCGA 4 cut(s) 180, 276, 1400, 1615
TasI AATT 9 cut(s) 79, 233, 423, 728, 945, 983, 1501, 1586, 1617
TatI WGTACW 3 cut(s) 151, 1209, 1699
TfiI GAWTC 5 cut(s) 273, 316, 1036, 1336, 1478
Tru1I TTAA 6 cut(s) 63, 780, 1181, 1296, 1323, 1711
Tru9I TTAA 6 cut(s) 63, 780, 1181, 1296, 1323, 1711
TscAI CASTG 6 cut(s) 367, 648, 934, 1090, 1260, 1698
TseFI GTSAC 3 cut(s) 101, 213, 1199
TseI GCWGC 3 cut(s) 38, 1595, 1598
Tsp45I GTSAC 3 cut(s) 101, 213, 1199
TspDTI ATGAA 7 cut(s) 159, 492, 996, 1107, 1119, 1329, 1544
TspGWI ACGGA 3 cut(s) 446, 1128, 1199
TspRI CASTG 6 cut(s) 367, 648, 934, 1090, 1260, 1698
Van91I CCANNNNNTGG 1 cut(s) 1245
XapI RAATTY 3 cut(s) 423, 728, 1586
XceI RCATGY 2 cut(s) 562, 590
XcmI CCANNNNNNNNNTGG 1 cut(s) 1643
XmiI GTMKAC 2 cut(s) 5, 352
XspI CTAG 8 cut(s) 218, 282, 665, 672, 740, 1274, 1412, 1557
Zsp2I ATGCAT 4 cut(s) 631, 1246, 1331, 1631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.