Rh6DG042600

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000768
Physical Location & Seq
Forward (+)
4575572 .. 4581990
6419 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG042600.1

Sequence Viewer

Length: 1710 bp
ATGTCTACCGAACGCTTAGCTACCGCTGCTCGAACTTCACATCTGGATGGTAAAAGACTGACAGCAAATTACAATCCAAACATGTGGAGTTATGATTTTATTCAATCGTTACAGATTGATGATCATAATCATGAAGAAGACAAAGATAATAGGTGGAAGTTGTTGGAGGAGGATGTGAAAAATATGATTGATTATGATAATGATGCACAATCGCTAGTCACTACACTTGAATTGATTGATGACATCCAACGATTAGGTTTGGGACACCGATTCGAGGCTAGTATAACAGAAGCCCTTGATAGAGTTTTGAAGAATCTTGACCAAATAACAAACGAGGATACTCCAAGTCTCCACCTCAATGCTCTCAGCTTCAGGCTCCTTAGACAGCATGGGTTTCAAGTCTCCCAAGATGTCTTCAAAATTTTCACGGACTACAACGGCAGCTTTAAGGATTTCCTTTGCAAAGATGTCAAAGGAATGCTAAGTCTGTACGAAGCTTCATTCCTTAGTATTGAAGGAGAAACCCTCTTGGATGAGGCCCTTGCATTCACCAGCATGCATCTAAAGAACCTCAGCAGATTCCATGTTACTCAAGACAAAGGTGTATTAGAGCAAGTGAGTCATGCATTGGAGATGCCATTGCACCACAGAATGCGAAGATTAGAAGCTAGATGGTATATTGAGGCATACAGTAAAAAGGCATATGCAAATCAGGTGCTACTTGAATTTGCCAAGCTAGATTACAATGTGGTGCAACAAACATACCAAAGAGATTTTAAAGACATTTCAAGGTGGTGGAAGGATACGGGCTTAGCAAAGAAGTTGTCCTTCAGCAGAGACAGACTGATGGAGTTGTTCTTTTGGTCAGTTGGTATAGTGTCTGAACCTCAATTCAGCAATCTTAGAAAAGGGATAACTAAAGTTAGTGCTCTAATAATGACTATTGATGATGTCTATGACGTTTATGGTACTTTGGATGAACTGGAGCTATTCACATCTGTTGTTGAAAGATGGGATGTGAATGCTGTGGAAATTCTTTCAGAGTACCAGTTGAAGCTCTGTTTCCTTGCTCTCTATAACACTGTGAATGAAATGACTTATGAAACTTTGAAGGAGCAAGGAGTGAATGTCCTTCCTTACGTGACAAAAGCTTGGGCTGATATGTGCAAATCTTGGTTAACGGAGGCAGTGTGGCGTCACAACAAGTTCACACCTACATTTGAAGAATATCTTGCCAATGCATGGATATCAGTGTCCGGGGTGGTCATTCTAGTCCATATCTACTTTCTACTGAATCAAAATATCTCAGATGAAGCACTTAAATGCTTAGAGAATCACCATGATCTCTTGCGTTGGCCGTCTCTTATTTTTCGGCTCTCAAATGATTTGGTTACTTCGAAGGCAGAACTAGAGAGAGGTGAAACTGCAACTTCTATATCCTGCATCAAACGTGATGGTGTTGTTTCTGATGAGGAATCTACACTCAAATATATTAGTAATTTGATTGAGAATAGTTGGAAGAAGATGAATAAAGATGGACTAATATTTGGTGTTAGTAGTGCTTCTTCTCCATTCACAAAGGAATTTGTAGCAGCAGCAACAAACCTCGCTCGGATTGCCCAATGCATTTACCAATATGGAGACGGGTTTGGTGCCCCAGACAAAAGAGTAAAGAATCAGATCCTAGCAGTGATTGTACAACCCGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

569

Amino Acids

65.65

Weight (kDa)

5.38

Isoelectric Point (pI)

36.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 28 - 210 9.6e-50 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 267 - 508 7.4e-83 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 307 - 508 5.3e-54 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1652
AccB7I CCANNNNNTGG 1 cut(s) 1242
AccI GTMKAC 1 cut(s) 5
AciI CCGC 1 cut(s) 24
AclWI GGATC 1 cut(s) 1675
AcoI YGGCCR 1 cut(s) 1355
AcsI RAATTY 4 cut(s) 420, 725, 1032, 1583
AcuI CTGAAG 2 cut(s) 355, 814
AcyI GRCGYC 1 cut(s) 1195
AfaI GTAC 4 cut(s) 491, 970, 1046, 1698
AfiI CCNNNNNNNGG 2 cut(s) 274, 1242
AflIII ACRYGT 1 cut(s) 81
AluBI AGCT 9 cut(s) 20, 369, 444, 497, 668, 736, 988, 1057, 1151
AluI AGCT 9 cut(s) 20, 369, 444, 497, 668, 736, 988, 1057, 1151
Alw21I GWGCWC 1 cut(s) 931
Alw26I GTCTC 5 cut(s) 353, 406, 831, 1365, 1635
AlwI GGATC 1 cut(s) 1675
AoxI GGCC 2 cut(s) 537, 1355
ApeKI GCWGC 4 cut(s) 26, 441, 1592, 1595
ApoI RAATTY 4 cut(s) 420, 725, 1032, 1583
ArsI GACNNNNNNTTYG 2 cut(s) 809, 841
AspS9I GGNCC 1 cut(s) 538
AsuC2I CCSGG 1 cut(s) 1258
AsuHPI GGTGA 3 cut(s) 541, 1328, 1430
AsuII TTCGAA 1 cut(s) 1397
BaeGI GKGCMC 1 cut(s) 1657
BanI GGYRCC 1 cut(s) 1652
BarI GAAGNNNNNNTAC 2 cut(s) 1549, 1581
BbsI GAAGAC 2 cut(s) 144, 406
Bbv12I GWGCWC 1 cut(s) 931
BbvCI CCTCAGC 1 cut(s) 572
BbvI GCAGC 4 cut(s) 13, 453, 1604, 1607
BccI CCATC 6 cut(s) 41, 666, 841, 1005, 1448, 1529
BceAI ACGGC 2 cut(s) 454, 1342
BciVI GTATCC 2 cut(s) 331, 796
BclI TGATCA 1 cut(s) 121
BcnI CCSGG 1 cut(s) 1258
BcoDI GTCTC 5 cut(s) 353, 406, 831, 1365, 1635
BfaI CTAG 7 cut(s) 215, 279, 669, 737, 1271, 1409, 1685
BfuI GTATCC 2 cut(s) 331, 796
BisI GCNGC 4 cut(s) 27, 442, 1593, 1596
BlpI GCTNAGC 2 cut(s) 16, 811
BlsI GCNGC 4 cut(s) 28, 443, 1594, 1597
Bme1390I CCNGG 1 cut(s) 1258
BmgT120I GGNCC 1 cut(s) 538
BmiI GGNNCC 2 cut(s) 377, 1654
BmrFI CCNGG 1 cut(s) 1258
BmsI GCATC 4 cut(s) 193, 568, 624, 1452
BpiI GAAGAC 2 cut(s) 144, 406
BplI GAGNNNNNCTC 2 cut(s) 510, 542
BpmI CTGGAG 1 cut(s) 1004
Bpu10I CCTNAGC 1 cut(s) 572
Bpu1102I GCTNAGC 2 cut(s) 16, 811
Bpu14I TTCGAA 1 cut(s) 1397
BpuEI CTTGAG 1 cut(s) 576
BpuMI CCSGG 1 cut(s) 1258
BsaAI YACGTR 1 cut(s) 1141
BsaBI GATNNNNATC 1 cut(s) 126
BsaHI GRCGYC 1 cut(s) 1195
BsaJI CCNNGG 1 cut(s) 1257
BsaXI ACNNNNNCTCC 4 cut(s) 1113, 1143, 1175, 1205
Bsc4I CCNNNNNNNGG 2 cut(s) 274, 1242
Bse1I ACTGG 2 cut(s) 987, 1048
Bse3DI GCAATG 1 cut(s) 638
Bse8I GATNNNNATC 1 cut(s) 126
BseDI CCNNGG 1 cut(s) 1257
BseGI GGATG 6 cut(s) 52, 178, 243, 538, 982, 1021
BseJI GATNNNNATC 1 cut(s) 126
BseLI CCNNNNNNNGG 2 cut(s) 274, 1242
BseMI GCAATG 1 cut(s) 638
BseMII CTCAG 3 cut(s) 379, 586, 1320
BseNI ACTGG 2 cut(s) 987, 1048
BseRI GAGGAG 1 cut(s) 182
BseSI GKGCMC 1 cut(s) 1657
BseXI GCAGC 4 cut(s) 13, 453, 1604, 1607
BshFI GGCC 2 cut(s) 539, 1357
BshNI GGYRCC 1 cut(s) 1652
BsiHKAI GWGCWC 1 cut(s) 931
BsiSI CCGG 1 cut(s) 1257
BslFI GGGAC 1 cut(s) 276
BslI CCNNNNNNNGG 2 cut(s) 274, 1242
BsmAI GTCTC 5 cut(s) 353, 406, 831, 1365, 1635
BsmBI CGTCTC 2 cut(s) 1365, 1635
BsmFI GGGAC 1 cut(s) 276
BsmI GAATGC 4 cut(s) 483, 545, 657, 1027
BsnI GGCC 2 cut(s) 539, 1357
Bsp119I TTCGAA 1 cut(s) 1397
Bsp1286I GDGCHC 2 cut(s) 931, 1657
Bsp1407I TGTACA 1 cut(s) 1696
Bsp143I GATC 3 cut(s) 121, 1342, 1680
Bsp1720I GCTNAGC 2 cut(s) 16, 811
BspACI CCGC 1 cut(s) 24
BspANI GGCC 2 cut(s) 539, 1357
BspCNI CTCAG 3 cut(s) 378, 585, 1319
BspHI TCATGA 1 cut(s) 130
BspLI GGNNCC 2 cut(s) 377, 1654
BspPI GGATC 1 cut(s) 1675
BspT104I TTCGAA 1 cut(s) 1397
BspT107I GGYRCC 1 cut(s) 1652
BsrDI GCAATG 1 cut(s) 638
BsrGI TGTACA 1 cut(s) 1696
BsrI ACTGG 2 cut(s) 987, 1048
BssECI CCNNGG 1 cut(s) 1257
BssMI GATC 3 cut(s) 121, 1342, 1680
BssNI GRCGYC 1 cut(s) 1195
Bst4CI ACNGT 2 cut(s) 692, 1084
BstACI GRCGYC 1 cut(s) 1195
BstAUI TGTACA 1 cut(s) 1696
BstBAI YACGTR 1 cut(s) 1141
BstBI TTCGAA 1 cut(s) 1397
BstC8I GCNNGC 1 cut(s) 557
BstF5I GGATG 6 cut(s) 52, 178, 243, 538, 982, 1021
BstKTI GATC 3 cut(s) 124, 1345, 1683
BstMAI GTCTC 5 cut(s) 353, 406, 831, 1365, 1635
BstMBI GATC 3 cut(s) 121, 1342, 1680
BstMWI GCNNNNNNNGC 2 cut(s) 26, 1616
BstNSI RCATGY 2 cut(s) 85, 559
BstSCI CCNGG 1 cut(s) 1256
BstSLI GKGCMC 1 cut(s) 1657
BstV1I GCAGC 4 cut(s) 13, 453, 1604, 1607
BstV2I GAAGAC 2 cut(s) 144, 406
BstX2I RGATCY 1 cut(s) 1680
BstXI CCANNNNNNTGG 1 cut(s) 84
BstYI RGATCY 1 cut(s) 1680
BsuI GTATCC 2 cut(s) 331, 796
BsuRI GGCC 2 cut(s) 539, 1357
BtsCI GGATG 6 cut(s) 52, 178, 243, 538, 982, 1021
BtsI GCAGTG 2 cut(s) 1194, 1695
BtsIMutI CAGTG 4 cut(s) 1080, 1194, 1257, 1695
Cac8I GCNNGC 1 cut(s) 557
CciI TCATGA 1 cut(s) 130
Cfr13I GGNCC 1 cut(s) 538
CseI GACGC 1 cut(s) 1184
Csp6I GTAC 4 cut(s) 490, 969, 1045, 1697
CviAII CATG 8 cut(s) 82, 131, 389, 556, 584, 623, 1242, 1340
CviQI GTAC 4 cut(s) 490, 969, 1045, 1697
DpnI GATC 3 cut(s) 123, 1344, 1682
DpnII GATC 3 cut(s) 121, 1342, 1680
DraI TTTAAA 1 cut(s) 778
EaeI YGGCCR 1 cut(s) 1355
Eco32I GATATC 1 cut(s) 1248
Eco57I CTGAAG 2 cut(s) 355, 814
EcoO109I RGGNCCY 1 cut(s) 538
EcoRV GATATC 1 cut(s) 1248
EcoT22I ATGCAT 4 cut(s) 561, 628, 1243, 1628
Esp3I CGTCTC 2 cut(s) 1365, 1635
FaeI CATG 8 cut(s) 85, 134, 392, 559, 587, 626, 1245, 1343
FalI AAGNNNNNCTT 4 cut(s) 812, 844, 1215, 1247
FaqI GGGAC 1 cut(s) 276
FatI CATG 8 cut(s) 81, 130, 388, 555, 583, 622, 1241, 1339
FauNDI CATATG 1 cut(s) 703
FbaI TGATCA 1 cut(s) 121
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 4 cut(s) 27, 442, 1593, 1596
FokI GGATG 6 cut(s) 59, 185, 230, 545, 989, 1028
Fsp4HI GCNGC 4 cut(s) 27, 442, 1593, 1596
FspBI CTAG 7 cut(s) 215, 279, 669, 737, 1271, 1409, 1685
GluI GCNGC 4 cut(s) 27, 442, 1593, 1596
GsuI CTGGAG 1 cut(s) 1004
HaeIII GGCC 2 cut(s) 539, 1357
HapII CCGG 1 cut(s) 1257
HgaI GACGC 1 cut(s) 1184
Hin1I GRCGYC 1 cut(s) 1195
Hin1II CATG 8 cut(s) 85, 134, 392, 559, 587, 626, 1245, 1343
HincII GTYRAC 1 cut(s) 1179
HindII GTYRAC 1 cut(s) 1179
HindIII AAGCTT 2 cut(s) 495, 1149
HinfI GANTC 8 cut(s) 270, 313, 579, 619, 1294, 1333, 1475, 1675
HpaI GTTAAC 1 cut(s) 1179
HpaII CCGG 1 cut(s) 1257
HphI GGTGA 3 cut(s) 541, 1328, 1430
Hpy166II GTNNAC 3 cut(s) 6, 1179, 1209
Hpy188I TCNGA 6 cut(s) 883, 1042, 1309, 1468, 1614, 1680
Hpy188III TCNNGA 4 cut(s) 44, 131, 317, 593
Hpy8I GTNNAC 3 cut(s) 6, 1179, 1209
HpyAV CCTTC 6 cut(s) 509, 793, 838, 1105, 1142, 1393
HpyCH4III ACNGT 2 cut(s) 692, 1084
HpyCH4IV ACGT 3 cut(s) 960, 1140, 1450
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 1616
HpySE526I ACGT 3 cut(s) 960, 1140, 1450
Hsp92I GRCGYC 1 cut(s) 1195
Hsp92II CATG 8 cut(s) 85, 134, 392, 559, 587, 626, 1245, 1343
Ksp22I TGATCA 1 cut(s) 121
KspAI GTTAAC 1 cut(s) 1179
Kzo9I GATC 3 cut(s) 121, 1342, 1680
LmnI GCTCC 3 cut(s) 381, 985, 1114
LpnPI CCDG 9 cut(s) 29, 358, 565, 698, 968, 1061, 1270, 1453, 1671
Lsp1109I GCAGC 4 cut(s) 13, 453, 1604, 1607
LweI GCATC 4 cut(s) 193, 568, 624, 1452
MaeI CTAG 7 cut(s) 215, 279, 669, 737, 1271, 1409, 1685
MaeII ACGT 3 cut(s) 960, 1140, 1450
MaeIII GTNAC 6 cut(s) 108, 217, 586, 1141, 1196, 1390
MalI GATC 3 cut(s) 123, 1344, 1682
MboI GATC 3 cut(s) 121, 1342, 1680
MboII GAAGA 9 cut(s) 146, 149, 322, 406, 669, 1235, 1531, 1534, 1557
MflI RGATCY 1 cut(s) 1680
MhlI GDGCHC 2 cut(s) 931, 1657
MluCI AATT 8 cut(s) 67, 230, 420, 725, 890, 1032, 1498, 1583
MlyI GAGTC 1 cut(s) 628
MmeI TCCRAC 3 cut(s) 144, 271, 1496
Mph1103I ATGCAT 4 cut(s) 561, 628, 1243, 1628
MseI TTAA 5 cut(s) 447, 777, 1178, 1320, 1708
MslI CAYNNNNRTG 5 cut(s) 45, 129, 357, 554, 1321
MspA1I CMGCKG 1 cut(s) 26
MspI CCGG 1 cut(s) 1257
MspR9I CCNGG 1 cut(s) 1258
Mva1269I GAATGC 4 cut(s) 483, 545, 657, 1027
MwoI GCNNNNNNNGC 2 cut(s) 26, 1616
NciI CCSGG 1 cut(s) 1258
NdeI CATATG 1 cut(s) 703
NdeII GATC 3 cut(s) 121, 1342, 1680
NlaIII CATG 8 cut(s) 85, 134, 392, 559, 587, 626, 1245, 1343
NlaIV GGNNCC 2 cut(s) 377, 1654
NmuCI GTSAC 3 cut(s) 217, 1141, 1196
NsiI ATGCAT 4 cut(s) 561, 628, 1243, 1628
NspI RCATGY 2 cut(s) 85, 559
NspV TTCGAA 1 cut(s) 1397
PaeI GCATGC 1 cut(s) 559
PagI TCATGA 1 cut(s) 130
PciI ACATGT 1 cut(s) 81
PctI GAATGC 4 cut(s) 483, 545, 657, 1027
PfeI GAWTC 7 cut(s) 270, 313, 579, 1294, 1333, 1475, 1675
PflMI CCANNNNNTGG 1 cut(s) 1242
PkrI GCNGC 4 cut(s) 28, 443, 1594, 1597
PleI GAGTC 1 cut(s) 627
PpsI GAGTC 1 cut(s) 627
Ppu21I YACGTR 1 cut(s) 1141
PscI ACATGT 1 cut(s) 81
PspN4I GGNNCC 2 cut(s) 377, 1654
PspPI GGNCC 1 cut(s) 538
PsuI RGATCY 1 cut(s) 1680
RsaI GTAC 4 cut(s) 491, 970, 1046, 1698
RsaNI GTAC 4 cut(s) 490, 969, 1045, 1697
RseI CAYNNNNRTG 5 cut(s) 45, 129, 357, 554, 1321
SaqAI TTAA 5 cut(s) 447, 777, 1178, 1320, 1708
SatI GCNGC 4 cut(s) 27, 442, 1593, 1596
Sau3AI GATC 3 cut(s) 121, 1342, 1680
Sau96I GGNCC 1 cut(s) 538
SchI GAGTC 1 cut(s) 628
ScrFI CCNGG 1 cut(s) 1258
SduI GDGCHC 2 cut(s) 931, 1657
SfaNI GCATC 4 cut(s) 193, 568, 624, 1452
SfuI TTCGAA 1 cut(s) 1397
SmiMI CAYNNNNRTG 5 cut(s) 45, 129, 357, 554, 1321
SmlI CTYRAG 1 cut(s) 591
SmoI CTYRAG 1 cut(s) 591
SphI GCATGC 1 cut(s) 559
Sse9I AATT 8 cut(s) 67, 230, 420, 725, 890, 1032, 1498, 1583
SsiI CCGC 1 cut(s) 24
SspI AATATT 1 cut(s) 1545
SspMI CTAG 7 cut(s) 215, 279, 669, 737, 1271, 1409, 1685
StyD4I CCNGG 1 cut(s) 1256
TaaI ACNGT 2 cut(s) 692, 1084
TaiI ACGT 3 cut(s) 963, 1143, 1453
TaqI TCGA 3 cut(s) 31, 273, 1397
TasI AATT 8 cut(s) 67, 230, 420, 725, 890, 1032, 1498, 1583
TatI WGTACW 1 cut(s) 1696
TfiI GAWTC 7 cut(s) 270, 313, 579, 1294, 1333, 1475, 1675
Tru1I TTAA 5 cut(s) 447, 777, 1178, 1320, 1708
Tru9I TTAA 5 cut(s) 447, 777, 1178, 1320, 1708
TscAI CASTG 4 cut(s) 1087, 1194, 1257, 1695
TseFI GTSAC 3 cut(s) 217, 1141, 1196
TseI GCWGC 4 cut(s) 26, 441, 1592, 1595
Tsp45I GTSAC 3 cut(s) 217, 1141, 1196
TspDTI ATGAA 7 cut(s) 147, 489, 993, 1104, 1116, 1326, 1541
TspGWI ACGGA 2 cut(s) 443, 1196
TspRI CASTG 4 cut(s) 1087, 1194, 1257, 1695
Van91I CCANNNNNTGG 1 cut(s) 1242
XapI RAATTY 4 cut(s) 420, 725, 1032, 1583
XceI RCATGY 2 cut(s) 85, 559
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 7 cut(s) 215, 279, 669, 737, 1271, 1409, 1685
Zsp2I ATGCAT 4 cut(s) 561, 628, 1243, 1628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.