RchiOBHm_Chr2g0160591

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000768
Physical Location & Seq
Reverse (-)
76423575 .. 76426962
3388 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52902

Sequence Viewer

Length: 1506 bp
ATGTCTACCCAATGCTTAGCAAGCAGCGGTAGCACTGCCGCTCAAACTTCAAATCTGGATGTTAAAAGACTGACAGCAAATTACAAGCCAAGTATTTGGAGTTGCGATTTTCTTCAGTCGTTGCAGATTGATGATCGTAATCATGAAGAAGTATACGGAGATAATAGGTGGAAGTTGATGGAGGAGGATCTAAAAAATATGATTGATGCAGAGTCACTAGAGACTACACTTGAATTGATTGATGACATCCAACAATTAGATGTTTTCAAATTTTTCATGGATTGTGACGGCAGCTTTAAGGATTGCCTTTGCAAAGATGTCAAAGGCATGCTAAGTCTGTATGAAGCTTCATTCCTTGGTATTGAAGGAGAAACCCTCTTGGAAAAGGCTCTTGCATTCACCAGCATGCACCTAAAGAACCTCAGTAGATTGCATGTTACTCAAGACAAAGGTGTATTAGAGCAAGTGAGTCATGCATTGGAGATGCCATTGCACCACAGAATGCAAAGATTAGATGCTAGATGGTATATTGAGGCATACAGTAAAAAGGCATATGCAAGTCAGGTGCTACTTGAATTTGCCAAGCTAGATTACAATGTGGTGCAACAAACATACCAAAGAGATTTTAAAGATATTTCAAGGTGGTGGAAGGATAAGGGGTTAGCAAAGAAGTTGTCCTTCAGCAGAGACAGACTGATGGAGTGGTTCTTTTGGTCAGTTGGTATAGTGTCTGAACCTCAATTCAGCGATGTTAGGAAAGGGATAACTAAAGTCGGTGCTCTAATAACGACTATTGATGATGTCTATGATGTTTATGGTACTTTGGATGAACTAGAGCTATTCACATCTGTTGTTGAAAGATGGGATGTGAATGCTGTGGAAATTCTTTCAGACTACCAGCTGGAGCTCTGTTTCCTTGCTCTCTATAACACTGTGAATGAAATGACTTATGAAACTTTGAAGGAGCAAGGAGTGAACGTTCTTCCTTACCTGACAAAAGCTTACACACCTACATTTGACGAATATCTTGCCAATGCATGGATATCAGTGTCCGGGGTAGTCATTCTGGTCCATACCTACTTTCTACTCAATCAAAATATCTCGAATGAAGCACTTAAATGCTTAGAGAATCACCATGATCTCTTGTGTTGGCAGTCTGTTATTTTTCGGCTCTTAAATGATTTGGCTACTTTGAAGGCAGAACTAGAGAGAGGTGAAACTGCAACTTCAATATCCTGCATCAAACGTGGTGGTGTTGTTTCTGATGAGGAATCTGCTCACAAATATATTAGTAATTTGATTGAGAGTAGTTGGAAGAAGATGAACAAAGATGGACTAATATTTGGTGCCAATAGTGCTTCTTCTCCATTCACAAAAGAATTTGTAGCAGCAGCAACAAACCTTGCTCGAATTGCCCAATGTATCTACCAATATGGAGACGGGATTGGTGCCCCGGATAAAAGAGTAAAGAACCGGATCCTAGCAGTGATTGTACAACCCGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

501

Amino Acids

57.17

Weight (kDa)

5.11

Isoelectric Point (pI)

35.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 87 - 160 3e-20 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 217 - 440 4.3e-67 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 257 - 440 1.5e-35 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 1346, 1448
AccB7I CCANNNNNTGG 1 cut(s) 1038
AccBSI CCGCTC 1 cut(s) 41
AccI GTMKAC 2 cut(s) 5, 153
AciI CCGC 2 cut(s) 27, 39
AclI AACGTT 1 cut(s) 978
AclWI GGATC 3 cut(s) 195, 1471, 1484
AcsI RAATTY 4 cut(s) 269, 575, 882, 1379
AcuI CTGAAG 2 cut(s) 98, 664
AfaI GTAC 2 cut(s) 820, 1494
AfiI CCNNNNNNNGG 1 cut(s) 1038
AloI GAACNNNNNNTCC 2 cut(s) 963, 995
AluBI AGCT 7 cut(s) 294, 347, 586, 838, 901, 907, 1001
AluI AGCT 7 cut(s) 294, 347, 586, 838, 901, 907, 1001
Alw21I GWGCWC 2 cut(s) 781, 909
Alw26I GTCTC 3 cut(s) 215, 681, 1431
AlwI GGATC 3 cut(s) 195, 1471, 1484
ApeKI GCWGC 4 cut(s) 24, 291, 1388, 1391
ApoI RAATTY 4 cut(s) 269, 575, 882, 1379
ArsI GACNNNNNNTTYG 2 cut(s) 659, 691
AspS9I GGNCC 1 cut(s) 1069
AsuC2I CCSGG 2 cut(s) 1054, 1454
AsuHPI GGTGA 3 cut(s) 391, 1124, 1226
AvaII GGWCC 1 cut(s) 1069
BaeGI GKGCMC 1 cut(s) 1453
BamHI GGATCC 1 cut(s) 1476
BanI GGYRCC 2 cut(s) 1346, 1448
BanII GRGCYC 1 cut(s) 909
Bbv12I GWGCWC 2 cut(s) 781, 909
BbvI GCAGC 4 cut(s) 36, 303, 1400, 1403
BccI CCATC 5 cut(s) 172, 516, 691, 855, 1325
BceAI ACGGC 1 cut(s) 304
BcgI CGANNNNNNTGC 2 cut(s) 1010, 1044
BcnI CCSGG 2 cut(s) 1054, 1454
BcoDI GTCTC 3 cut(s) 215, 681, 1431
BfaI CTAG 6 cut(s) 218, 519, 587, 833, 1205, 1481
BisI GCNGC 5 cut(s) 25, 39, 292, 1389, 1392
BlpI GCTNAGC 1 cut(s) 16
BlsI GCNGC 5 cut(s) 26, 40, 293, 1390, 1393
Bme1390I CCNGG 2 cut(s) 1054, 1454
Bme18I GGWCC 1 cut(s) 1069
BmgT120I GGNCC 1 cut(s) 1069
BmiI GGNNCC 3 cut(s) 1348, 1450, 1478
BmrFI CCNGG 2 cut(s) 1054, 1454
BmsI GCATC 4 cut(s) 196, 474, 505, 1248
BplI GAGNNNNNCTC 2 cut(s) 360, 392
BpmI CTGGAG 1 cut(s) 923
Bpu1102I GCTNAGC 1 cut(s) 16
BpuEI CTTGAG 1 cut(s) 426
BpuMI CCSGG 2 cut(s) 1054, 1454
BsaBI GATNNNNATC 1 cut(s) 138
BsaJI CCNNGG 3 cut(s) 355, 1053, 1452
BsaWI WCCGGW 1 cut(s) 1473
BsaXI ACNNNNNCTCC 2 cut(s) 963, 993
Bsc4I CCNNNNNNNGG 1 cut(s) 1038
Bse3DI GCAATG 1 cut(s) 488
Bse8I GATNNNNATC 1 cut(s) 138
BseDI CCNNGG 3 cut(s) 355, 1053, 1452
BseGI GGATG 4 cut(s) 64, 246, 832, 871
BseJI GATNNNNATC 1 cut(s) 138
BseLI CCNNNNNNNGG 1 cut(s) 1038
BseMI GCAATG 1 cut(s) 488
BseMII CTCAG 1 cut(s) 436
BseRI GAGGAG 1 cut(s) 197
BseSI GKGCMC 1 cut(s) 1453
BseXI GCAGC 4 cut(s) 36, 303, 1400, 1403
BshNI GGYRCC 2 cut(s) 1346, 1448
BsiHKAI GWGCWC 2 cut(s) 781, 909
BsiSI CCGG 3 cut(s) 1053, 1454, 1474
BslI CCNNNNNNNGG 1 cut(s) 1038
BsmAI GTCTC 3 cut(s) 215, 681, 1431
BsmBI CGTCTC 1 cut(s) 1431
BsmI GAATGC 3 cut(s) 395, 507, 877
Bsp1286I GDGCHC 3 cut(s) 781, 909, 1453
Bsp1407I TGTACA 1 cut(s) 1492
Bsp143I GATC 4 cut(s) 133, 187, 1138, 1476
Bsp1720I GCTNAGC 1 cut(s) 16
BspACI CCGC 2 cut(s) 27, 39
BspCNI CTCAG 1 cut(s) 435
BspHI TCATGA 1 cut(s) 142
BspLI GGNNCC 3 cut(s) 1348, 1450, 1478
BspPI GGATC 3 cut(s) 195, 1471, 1484
BspT107I GGYRCC 2 cut(s) 1346, 1448
BsrBI CCGCTC 1 cut(s) 41
BsrDI GCAATG 1 cut(s) 488
BsrGI TGTACA 1 cut(s) 1492
BssECI CCNNGG 3 cut(s) 355, 1053, 1452
BssMI GATC 4 cut(s) 133, 187, 1138, 1476
BssNAI GTATAC 1 cut(s) 154
BssT1I CCWWGG 1 cut(s) 355
Bst1107I GTATAC 1 cut(s) 154
Bst4CI ACNGT 2 cut(s) 542, 934
BstAUI TGTACA 1 cut(s) 1492
BstC8I GCNNGC 3 cut(s) 22, 329, 407
BstDEI CTNAG 4 cut(s) 16, 332, 422, 1123
BstF5I GGATG 4 cut(s) 64, 246, 832, 871
BstKTI GATC 4 cut(s) 136, 190, 1141, 1479
BstMAI GTCTC 3 cut(s) 215, 681, 1431
BstMBI GATC 4 cut(s) 133, 187, 1138, 1476
BstMWI GCNNNNNNNGC 4 cut(s) 21, 30, 1355, 1412
BstNSI RCATGY 3 cut(s) 331, 409, 437
BstSCI CCNGG 2 cut(s) 1052, 1452
BstSLI GKGCMC 1 cut(s) 1453
BstV1I GCAGC 4 cut(s) 36, 303, 1400, 1403
BstX2I RGATCY 2 cut(s) 187, 1476
BstXI CCANNNNNNTGG 1 cut(s) 96
BstYI RGATCY 2 cut(s) 187, 1476
BstZ17I GTATAC 1 cut(s) 154
BtgZI GCGATG 1 cut(s) 762
BtsCI GGATG 4 cut(s) 64, 246, 832, 871
BtsI GCAGTG 2 cut(s) 33, 1491
BtsIMutI CAGTG 4 cut(s) 33, 930, 1053, 1491
Cac8I GCNNGC 3 cut(s) 22, 329, 407
CciI TCATGA 1 cut(s) 142
Cfr13I GGNCC 1 cut(s) 1069
Csp6I GTAC 2 cut(s) 819, 1493
CspCI CAANNNNNGTGG 2 cut(s) 1231, 1266
CviAII CATG 8 cut(s) 143, 277, 328, 406, 434, 473, 1038, 1136
CviQI GTAC 2 cut(s) 819, 1493
DdeI CTNAG 4 cut(s) 16, 332, 422, 1123
DpnI GATC 4 cut(s) 135, 189, 1140, 1478
DpnII GATC 4 cut(s) 133, 187, 1138, 1476
DraI TTTAAA 1 cut(s) 628
Ecl136II GAGCTC 1 cut(s) 907
Eco130I CCWWGG 1 cut(s) 355
Eco24I GRGCYC 1 cut(s) 909
Eco32I GATATC 1 cut(s) 1044
Eco47I GGWCC 1 cut(s) 1069
Eco53kI GAGCTC 1 cut(s) 907
Eco57I CTGAAG 2 cut(s) 98, 664
EcoICRI GAGCTC 1 cut(s) 907
EcoRV GATATC 1 cut(s) 1044
EcoT14I CCWWGG 1 cut(s) 355
EcoT22I ATGCAT 2 cut(s) 478, 1039
EcoT38I GRGCYC 1 cut(s) 909
ErhI CCWWGG 1 cut(s) 355
Esp3I CGTCTC 1 cut(s) 1431
FaeI CATG 8 cut(s) 146, 280, 331, 409, 437, 476, 1041, 1139
FalI AAGNNNNNCTT 2 cut(s) 662, 694
FatI CATG 8 cut(s) 142, 276, 327, 405, 433, 472, 1037, 1135
FauNDI CATATG 1 cut(s) 553
FblI GTMKAC 2 cut(s) 5, 153
Fnu4HI GCNGC 5 cut(s) 25, 39, 292, 1389, 1392
FokI GGATG 4 cut(s) 71, 233, 839, 878
FriOI GRGCYC 1 cut(s) 909
Fsp4HI GCNGC 5 cut(s) 25, 39, 292, 1389, 1392
FspBI CTAG 6 cut(s) 218, 519, 587, 833, 1205, 1481
GluI GCNGC 5 cut(s) 25, 39, 292, 1389, 1392
GsuI CTGGAG 1 cut(s) 923
HapII CCGG 3 cut(s) 1053, 1454, 1474
Hin1II CATG 8 cut(s) 146, 280, 331, 409, 437, 476, 1041, 1139
HindIII AAGCTT 2 cut(s) 345, 999
HinfI GANTC 4 cut(s) 212, 469, 1129, 1271
HpaII CCGG 3 cut(s) 1053, 1454, 1474
HphI GGTGA 3 cut(s) 391, 1124, 1226
Hpy166II GTNNAC 3 cut(s) 6, 154, 976
Hpy188I TCNGA 3 cut(s) 733, 892, 1264
Hpy188III TCNNGA 4 cut(s) 56, 143, 443, 1102
Hpy8I GTNNAC 3 cut(s) 6, 154, 976
HpyAV CCTTC 5 cut(s) 359, 643, 688, 955, 1189
HpyCH4III ACNGT 2 cut(s) 542, 934
HpyCH4IV ACGT 2 cut(s) 978, 1246
HpyF10VI GCNNNNNNNGC 4 cut(s) 21, 30, 1355, 1412
HpyF3I CTNAG 4 cut(s) 16, 332, 422, 1123
HpySE526I ACGT 2 cut(s) 978, 1246
Hsp92II CATG 8 cut(s) 146, 280, 331, 409, 437, 476, 1041, 1139
Kzo9I GATC 4 cut(s) 133, 187, 1138, 1476
LmnI GCTCC 2 cut(s) 904, 964
Lsp1109I GCAGC 4 cut(s) 36, 303, 1400, 1403
LweI GCATC 4 cut(s) 196, 474, 505, 1248
MaeI CTAG 6 cut(s) 218, 519, 587, 833, 1205, 1481
MaeII ACGT 2 cut(s) 978, 1246
MaeIII GTNAC 3 cut(s) 213, 284, 436
MalI GATC 4 cut(s) 135, 189, 1140, 1478
MbiI CCGCTC 1 cut(s) 41
MboI GATC 4 cut(s) 133, 187, 1138, 1476
MboII GAAGA 6 cut(s) 104, 158, 974, 1327, 1330, 1353
MflI RGATCY 2 cut(s) 187, 1476
MhlI GDGCHC 3 cut(s) 781, 909, 1453
MlyI GAGTC 2 cut(s) 221, 478
MmeI TCCRAC 2 cut(s) 274, 1292
MnlI CCTC 8 cut(s) 175, 178, 386, 431, 526, 747, 1205, 1261
Mph1103I ATGCAT 2 cut(s) 478, 1039
MseI TTAA 5 cut(s) 63, 297, 627, 1116, 1175
MslI CAYNNNNRTG 2 cut(s) 404, 1117
MspA1I CMGCKG 2 cut(s) 27, 901
MspI CCGG 3 cut(s) 1053, 1454, 1474
MspR9I CCNGG 2 cut(s) 1054, 1454
Mva1269I GAATGC 3 cut(s) 395, 507, 877
MwoI GCNNNNNNNGC 4 cut(s) 21, 30, 1355, 1412
NciI CCSGG 2 cut(s) 1054, 1454
NdeI CATATG 1 cut(s) 553
NdeII GATC 4 cut(s) 133, 187, 1138, 1476
NlaIII CATG 8 cut(s) 146, 280, 331, 409, 437, 476, 1041, 1139
NlaIV GGNNCC 3 cut(s) 1348, 1450, 1478
NmuCI GTSAC 2 cut(s) 213, 284
NsiI ATGCAT 2 cut(s) 478, 1039
NspI RCATGY 3 cut(s) 331, 409, 437
PaeI GCATGC 2 cut(s) 331, 409
PagI TCATGA 1 cut(s) 142
PctI GAATGC 3 cut(s) 395, 507, 877
PfeI GAWTC 2 cut(s) 1129, 1271
PflMI CCANNNNNTGG 1 cut(s) 1038
PkrI GCNGC 5 cut(s) 26, 40, 293, 1390, 1393
PleI GAGTC 2 cut(s) 220, 477
PpsI GAGTC 2 cut(s) 220, 477
Psp124BI GAGCTC 1 cut(s) 909
Psp1406I AACGTT 1 cut(s) 978
PspN4I GGNNCC 3 cut(s) 1348, 1450, 1478
PspPI GGNCC 1 cut(s) 1069
PsuI RGATCY 2 cut(s) 187, 1476
PvuII CAGCTG 1 cut(s) 901
RsaI GTAC 2 cut(s) 820, 1494
RsaNI GTAC 2 cut(s) 819, 1493
RseI CAYNNNNRTG 2 cut(s) 404, 1117
SacI GAGCTC 1 cut(s) 909
SaqAI TTAA 5 cut(s) 63, 297, 627, 1116, 1175
SatI GCNGC 5 cut(s) 25, 39, 292, 1389, 1392
Sau3AI GATC 4 cut(s) 133, 187, 1138, 1476
Sau96I GGNCC 1 cut(s) 1069
SchI GAGTC 2 cut(s) 221, 478
ScrFI CCNGG 2 cut(s) 1054, 1454
SduI GDGCHC 3 cut(s) 781, 909, 1453
SfaNI GCATC 4 cut(s) 196, 474, 505, 1248
SinI GGWCC 1 cut(s) 1069
SmiMI CAYNNNNRTG 2 cut(s) 404, 1117
SmlI CTYRAG 1 cut(s) 441
SmoI CTYRAG 1 cut(s) 441
SphI GCATGC 2 cut(s) 331, 409
SsiI CCGC 2 cut(s) 27, 39
SspI AATATT 1 cut(s) 1341
SspMI CTAG 6 cut(s) 218, 519, 587, 833, 1205, 1481
SstI GAGCTC 1 cut(s) 909
StyD4I CCNGG 2 cut(s) 1052, 1452
StyI CCWWGG 1 cut(s) 355
TaaI ACNGT 2 cut(s) 542, 934
TaiI ACGT 2 cut(s) 981, 1249
TaqI TCGA 2 cut(s) 1103, 1408
TatI WGTACW 1 cut(s) 1492
TauI GCSGC 1 cut(s) 41
TfiI GAWTC 2 cut(s) 1129, 1271
Tru1I TTAA 5 cut(s) 63, 297, 627, 1116, 1175
Tru9I TTAA 5 cut(s) 63, 297, 627, 1116, 1175
TscAI CASTG 4 cut(s) 40, 937, 1053, 1491
TseFI GTSAC 2 cut(s) 213, 284
TseI GCWGC 4 cut(s) 24, 291, 1388, 1391
Tsp45I GTSAC 2 cut(s) 213, 284
TspDTI ATGAA 9 cut(s) 159, 265, 339, 357, 843, 954, 966, 1122, 1337
TspGWI ACGGA 1 cut(s) 171
TspRI CASTG 4 cut(s) 40, 937, 1053, 1491
Van91I CCANNNNNTGG 1 cut(s) 1038
VpaK11BI GGWCC 1 cut(s) 1069
XapI RAATTY 4 cut(s) 269, 575, 882, 1379
XceI RCATGY 3 cut(s) 331, 409, 437
XmiI GTMKAC 2 cut(s) 5, 153
XspI CTAG 6 cut(s) 218, 519, 587, 833, 1205, 1481
Zsp2I ATGCAT 2 cut(s) 478, 1039
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.