RLG00000023197

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000768
Physical Location & Seq
Forward (+)
19782859 .. 19788297
5439 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023197

Sequence Viewer

Length: 1710 bp
ATGTCTACCCAATGCTTAGCAAGTAGCGGTAGCCCTGCTGCTCAAATTTCACATCTGGATGTTAAAAGATTGACAACAAATTACAAGCCAAGTATTTGGAGTCACGATTTTGTTCAGTCGTTACAGATTGATCATCGTAATCATGAAGAAGACAAAGATAATAGGTGGAAGTTGATCGAGGAGGATCTAAAAAATATGATTGATGCAGAGTCACTAGAGACTACACTTGAATTGATTGATGATATCCAGCGATTAGGTTTGGGACACCGATTCGAGGCTAGTATAACAGAAGCCCTTGATAAAGTTTTGAAAACTTTTGACCAAATAACAAAGGTGGATACTCCAAGTCTGCACCTCACTGCTCTCAGCTTCAGACTCCTTAGACAACATGAGTTTCAAGTCTCCCAAGATGTTTTCAAAATTTTCACGGACTGCGACGACAGCTTCAAGGATTGCCTTTGCAAAGATGTCAAAGGAATGTTGAGTCTATACGAAGCTTCATTCCTTGGTATTGAAGGAGAAACTCTCTTGGATGAGGCCTTTGCATTCACCAGCATGCACCTAAAGAACCTCAGCAAATTACATGTTACTCAAGACAAAGATGTATTAGAGCAAGTGAGTCATGCATTGGAGATGCCATTGCACCATAGAATGCAAAGACTAGAGGCTAGATGGTATATTGAGGCATACAGTAAAAAGGCAGATGCAAATCAGGTGCTACTTGAATTTGCCAAGCTAGATTACAATGTGGTGCAACAAACATACCAAAGAGATCTTAAAGACATTTCAAGGTGGTGGAACGATACGGGGTTAGGAAAGAAGTTATCCTTCAGCAGAGACAGACTGGTGGAGTTGTTCTTTTGGTCAGTTGGTATAGTGTTTGAACCTCAACTCAGCAATCTTAGAAAAGGGATAACTAAAGTCAGTGCTCTAATAACGACAATTGATGATGTCTATGATGTTTATGGTGCTTTGGATGAACTAGAGCTATTCACATTTGTTGTTGAAAGATGGGATGTGAATGATGTGGAGATTCTTTCAGACTACCAGCTGAAGCTCTGTTTCCTTGCTCTCTATAACACTGTGAATGAAATGACTTATGAAACTTTGAAGGAGCAAGGAGTGAACGTCCTTCCTTATGTGAGAAAAGCTTGGGCAGATATGTGCAAAACTTGGTTAAAGGAGGCAAACTGGCGTCACAACAAGTACACACCTACATTTGAAGAATATCTTGCCAATGCATGGATATCAGTGTCCGGGGTGGTCATTCTAGTCCATACCTATTTTCTACTGAATCAAAATATCTCAGATGAAGCACTTAAATGCTTGGAGAATCACCATGATCTCCTGCGTTGGCCGTCTCTTATTTTTCGGCTCTCAAATGATTTGGTTACTTCGAAGGCAGAACTAGAGAGAGGTGAAACTGCAACTTCAATATCTTGCATTAGACGTGATAGTGTTATTTCTGATGAGGAATCTGCTCACAAATATATTAGTAATTTGATTGAGAATAGTTGGAAGAAGATGAACAAAGATGGACTACTATTTGGTGCTAGTAGAGCTTCTTCTCCATTCACAAAGGAATTTGTAGCAGCAGCAACGAACCTTGCTCGAATTGCCCAATGCATTTACCAATATGGAGACGGGATTGGTGCCCCAAACAAAAGAGCAAAGAACCAGATCCTAGCAGTGATTGTCGAACCCGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

570

Amino Acids

65.51

Weight (kDa)

5.42

Isoelectric Point (pI)

35.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 32 - 210 1.2e-47 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 268 - 508 4.8e-84 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 307 - 508 3e-55 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1652
AccB7I CCANNNNNTGG 1 cut(s) 1242
AccI GTMKAC 1 cut(s) 5
AciI CCGC 1 cut(s) 27
AclWI GGATC 2 cut(s) 192, 1675
AcoI YGGCCR 1 cut(s) 1355
AcsI RAATTY 4 cut(s) 45, 420, 725, 1583
AcuI CTGAAG 3 cut(s) 355, 814, 1073
AcyI GRCGYC 1 cut(s) 1195
AfaI GTAC 1 cut(s) 1208
AfiI CCNNNNNNNGG 2 cut(s) 274, 1242
AflIII ACRYGT 1 cut(s) 583
AjiI CACGTC 1 cut(s) 1451
AluBI AGCT 9 cut(s) 369, 444, 497, 736, 988, 1051, 1057, 1151, 1562
AluI AGCT 9 cut(s) 369, 444, 497, 736, 988, 1051, 1057, 1151, 1562
Alw21I GWGCWC 1 cut(s) 931
Alw26I GTCTC 5 cut(s) 212, 406, 831, 1365, 1635
AlwI GGATC 2 cut(s) 192, 1675
AoxI GGCC 2 cut(s) 537, 1355
ApeKI GCWGC 3 cut(s) 38, 1592, 1595
ApoI RAATTY 4 cut(s) 45, 420, 725, 1583
AsuC2I CCSGG 1 cut(s) 1258
AsuHPI GGTGA 3 cut(s) 541, 1328, 1430
AsuII TTCGAA 1 cut(s) 1397
BaeGI GKGCMC 1 cut(s) 1657
BanI GGYRCC 1 cut(s) 1652
BarI GAAGNNNNNNTAC 2 cut(s) 1549, 1581
BbsI GAAGAC 1 cut(s) 156
Bbv12I GWGCWC 1 cut(s) 931
BbvCI CCTCAGC 1 cut(s) 572
BbvI GCAGC 3 cut(s) 25, 1604, 1607
BccI CCATC 3 cut(s) 666, 1005, 1529
BceAI ACGGC 1 cut(s) 1342
BciVI GTATCC 1 cut(s) 331
BclI TGATCA 1 cut(s) 130
BcnI CCSGG 1 cut(s) 1258
BcoDI GTCTC 5 cut(s) 212, 406, 831, 1365, 1635
BfuI GTATCC 1 cut(s) 331
BglII AGATCT 1 cut(s) 772
BisI GCNGC 3 cut(s) 39, 1593, 1596
BlpI GCTNAGC 1 cut(s) 16
BlsI GCNGC 3 cut(s) 40, 1594, 1597
Bme1390I CCNGG 1 cut(s) 1258
BmgBI CACGTC 1 cut(s) 1451
BmiI GGNNCC 1 cut(s) 1654
BmrFI CCNGG 1 cut(s) 1258
BmsI GCATC 3 cut(s) 193, 624, 694
BpiI GAAGAC 1 cut(s) 156
BplI GAGNNNNNCTC 2 cut(s) 510, 542
Bpu10I CCTNAGC 1 cut(s) 572
Bpu1102I GCTNAGC 1 cut(s) 16
Bpu14I TTCGAA 1 cut(s) 1397
BpuEI CTTGAG 1 cut(s) 576
BpuMI CCSGG 1 cut(s) 1258
BsaBI GATNNNNATC 1 cut(s) 708
BsaHI GRCGYC 1 cut(s) 1195
BsaJI CCNNGG 2 cut(s) 505, 1257
BsaXI ACNNNNNCTCC 2 cut(s) 1113, 1143
Bsc4I CCNNNNNNNGG 2 cut(s) 274, 1242
Bse1I ACTGG 2 cut(s) 849, 1196
Bse3DI GCAATG 1 cut(s) 638
Bse8I GATNNNNATC 1 cut(s) 708
BseDI CCNNGG 2 cut(s) 505, 1257
BseGI GGATG 4 cut(s) 64, 538, 982, 1021
BseJI GATNNNNATC 1 cut(s) 708
BseLI CCNNNNNNNGG 2 cut(s) 274, 1242
BseMI GCAATG 1 cut(s) 638
BseMII CTCAG 4 cut(s) 379, 586, 907, 1320
BseNI ACTGG 2 cut(s) 849, 1196
BseRI GAGGAG 1 cut(s) 194
BseSI GKGCMC 1 cut(s) 1657
BseXI GCAGC 3 cut(s) 25, 1604, 1607
BsgI GTGCAG 1 cut(s) 335
BshFI GGCC 2 cut(s) 539, 1357
BshNI GGYRCC 1 cut(s) 1652
BsiHKAI GWGCWC 1 cut(s) 931
BsiSI CCGG 1 cut(s) 1257
BslFI GGGAC 1 cut(s) 276
BslI CCNNNNNNNGG 2 cut(s) 274, 1242
BsmAI GTCTC 5 cut(s) 212, 406, 831, 1365, 1635
BsmBI CGTCTC 2 cut(s) 1365, 1635
BsmFI GGGAC 1 cut(s) 276
BsmI GAATGC 2 cut(s) 545, 657
BsnI GGCC 2 cut(s) 539, 1357
Bsp119I TTCGAA 1 cut(s) 1397
Bsp1286I GDGCHC 2 cut(s) 931, 1657
Bsp143I GATC 6 cut(s) 130, 174, 184, 772, 1342, 1680
Bsp1720I GCTNAGC 1 cut(s) 16
BspACI CCGC 1 cut(s) 27
BspANI GGCC 2 cut(s) 539, 1357
BspCNI CTCAG 4 cut(s) 378, 585, 906, 1319
BspHI TCATGA 1 cut(s) 142
BspLI GGNNCC 1 cut(s) 1654
BspPI GGATC 2 cut(s) 192, 1675
BspT104I TTCGAA 1 cut(s) 1397
BspT107I GGYRCC 1 cut(s) 1652
BsrDI GCAATG 1 cut(s) 638
BsrI ACTGG 2 cut(s) 849, 1196
BssECI CCNNGG 2 cut(s) 505, 1257
BssMI GATC 6 cut(s) 130, 174, 184, 772, 1342, 1680
BssNI GRCGYC 1 cut(s) 1195
BssT1I CCWWGG 1 cut(s) 505
Bst4CI ACNGT 2 cut(s) 692, 1084
BstACI GRCGYC 1 cut(s) 1195
BstBI TTCGAA 1 cut(s) 1397
BstC8I GCNNGC 1 cut(s) 557
BstDEI CTNAG 7 cut(s) 16, 365, 380, 572, 893, 902, 1306
BstF5I GGATG 4 cut(s) 64, 538, 982, 1021
BstKTI GATC 6 cut(s) 133, 177, 187, 775, 1345, 1683
BstMAI GTCTC 5 cut(s) 212, 406, 831, 1365, 1635
BstMBI GATC 6 cut(s) 130, 174, 184, 772, 1342, 1680
BstMWI GCNNNNNNNGC 3 cut(s) 441, 1559, 1616
BstNSI RCATGY 2 cut(s) 559, 587
BstSCI CCNGG 1 cut(s) 1256
BstSLI GKGCMC 1 cut(s) 1657
BstV1I GCAGC 3 cut(s) 25, 1604, 1607
BstV2I GAAGAC 1 cut(s) 156
BstX2I RGATCY 3 cut(s) 184, 772, 1680
BstXI CCANNNNNNTGG 1 cut(s) 96
BstYI RGATCY 3 cut(s) 184, 772, 1680
BsuI GTATCC 1 cut(s) 331
BsuRI GGCC 2 cut(s) 539, 1357
BtrI CACGTC 1 cut(s) 1451
BtsCI GGATG 4 cut(s) 64, 538, 982, 1021
BtsI GCAGTG 2 cut(s) 357, 1695
BtsIMutI CAGTG 5 cut(s) 357, 931, 1080, 1257, 1695
Cac8I GCNNGC 1 cut(s) 557
CciI TCATGA 1 cut(s) 142
CseI GACGC 1 cut(s) 1184
Csp6I GTAC 1 cut(s) 1207
CviAII CATG 7 cut(s) 143, 389, 556, 584, 623, 1242, 1340
CviQI GTAC 1 cut(s) 1207
DdeI CTNAG 7 cut(s) 16, 365, 380, 572, 893, 902, 1306
DpnI GATC 6 cut(s) 132, 176, 186, 774, 1344, 1682
DpnII GATC 6 cut(s) 130, 174, 184, 772, 1342, 1680
EaeI YGGCCR 1 cut(s) 1355
Eco130I CCWWGG 1 cut(s) 505
Eco147I AGGCCT 1 cut(s) 539
Eco32I GATATC 2 cut(s) 244, 1248
Eco57I CTGAAG 3 cut(s) 355, 814, 1073
EcoRV GATATC 2 cut(s) 244, 1248
EcoT14I CCWWGG 1 cut(s) 505
EcoT22I ATGCAT 3 cut(s) 628, 1243, 1628
ErhI CCWWGG 1 cut(s) 505
Esp3I CGTCTC 2 cut(s) 1365, 1635
FaeI CATG 7 cut(s) 146, 392, 559, 587, 626, 1245, 1343
FalI AAGNNNNNCTT 4 cut(s) 812, 844, 1215, 1247
FaqI GGGAC 1 cut(s) 276
FatI CATG 7 cut(s) 142, 388, 555, 583, 622, 1241, 1339
FbaI TGATCA 1 cut(s) 130
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 3 cut(s) 39, 1593, 1596
FokI GGATG 4 cut(s) 71, 545, 989, 1028
Fsp4HI GCNGC 3 cut(s) 39, 1593, 1596
GluI GCNGC 3 cut(s) 39, 1593, 1596
HaeIII GGCC 2 cut(s) 539, 1357
HapII CCGG 1 cut(s) 1257
HgaI GACGC 1 cut(s) 1184
Hin1I GRCGYC 1 cut(s) 1195
Hin1II CATG 7 cut(s) 146, 392, 559, 587, 626, 1245, 1343
HindIII AAGCTT 2 cut(s) 495, 1149
HpaII CCGG 1 cut(s) 1257
HphI GGTGA 3 cut(s) 541, 1328, 1430
Hpy166II GTNNAC 3 cut(s) 6, 1126, 1209
Hpy188I TCNGA 4 cut(s) 374, 1042, 1309, 1468
Hpy188III TCNNGA 4 cut(s) 56, 104, 143, 593
Hpy8I GTNNAC 3 cut(s) 6, 1126, 1209
Hpy99I CGWCG 1 cut(s) 440
HpyAV CCTTC 5 cut(s) 509, 838, 1105, 1142, 1393
HpyCH4III ACNGT 2 cut(s) 692, 1084
HpyCH4IV ACGT 2 cut(s) 1128, 1450
HpyF10VI GCNNNNNNNGC 3 cut(s) 441, 1559, 1616
HpyF3I CTNAG 7 cut(s) 16, 365, 380, 572, 893, 902, 1306
HpySE526I ACGT 2 cut(s) 1128, 1450
Hsp92I GRCGYC 1 cut(s) 1195
Hsp92II CATG 7 cut(s) 146, 392, 559, 587, 626, 1245, 1343
Ksp22I TGATCA 1 cut(s) 130
Kzo9I GATC 6 cut(s) 130, 174, 184, 772, 1342, 1680
LmnI GCTCC 1 cut(s) 1114
Lsp1109I GCAGC 3 cut(s) 25, 1604, 1607
LweI GCATC 3 cut(s) 193, 624, 694
MaeII ACGT 2 cut(s) 1128, 1450
MaeIII GTNAC 6 cut(s) 101, 120, 210, 586, 1196, 1390
MalI GATC 6 cut(s) 132, 176, 186, 774, 1344, 1682
MboI GATC 6 cut(s) 130, 174, 184, 772, 1342, 1680
MboII GAAGA 6 cut(s) 158, 161, 1235, 1531, 1534, 1557
MfeI CAATTG 1 cut(s) 942
MflI RGATCY 3 cut(s) 184, 772, 1680
MhlI GDGCHC 2 cut(s) 931, 1657
MlyI GAGTC 5 cut(s) 109, 218, 369, 493, 628
MmeI TCCRAC 1 cut(s) 1496
Mph1103I ATGCAT 3 cut(s) 628, 1243, 1628
MseI TTAA 5 cut(s) 63, 777, 1178, 1320, 1708
MslI CAYNNNNRTG 3 cut(s) 57, 554, 1321
MspA1I CMGCKG 1 cut(s) 1051
MspI CCGG 1 cut(s) 1257
MspR9I CCNGG 1 cut(s) 1258
MunI CAATTG 1 cut(s) 942
Mva1269I GAATGC 2 cut(s) 545, 657
MwoI GCNNNNNNNGC 3 cut(s) 441, 1559, 1616
NciI CCSGG 1 cut(s) 1258
NdeII GATC 6 cut(s) 130, 174, 184, 772, 1342, 1680
NlaIII CATG 7 cut(s) 146, 392, 559, 587, 626, 1245, 1343
NlaIV GGNNCC 1 cut(s) 1654
NmuCI GTSAC 3 cut(s) 101, 210, 1196
NsiI ATGCAT 3 cut(s) 628, 1243, 1628
NspI RCATGY 2 cut(s) 559, 587
NspV TTCGAA 1 cut(s) 1397
PaeI GCATGC 1 cut(s) 559
PagI TCATGA 1 cut(s) 142
PceI AGGCCT 1 cut(s) 539
PciI ACATGT 1 cut(s) 583
PctI GAATGC 2 cut(s) 545, 657
PfeI GAWTC 5 cut(s) 270, 1033, 1294, 1333, 1475
PflMI CCANNNNNTGG 1 cut(s) 1242
PkrI GCNGC 3 cut(s) 40, 1594, 1597
PleI GAGTC 5 cut(s) 108, 217, 369, 492, 627
PpsI GAGTC 5 cut(s) 108, 217, 369, 492, 627
PscI ACATGT 1 cut(s) 583
PspN4I GGNNCC 1 cut(s) 1654
PsuI RGATCY 3 cut(s) 184, 772, 1680
PvuII CAGCTG 1 cut(s) 1051
RsaI GTAC 1 cut(s) 1208
RsaNI GTAC 1 cut(s) 1207
RseI CAYNNNNRTG 3 cut(s) 57, 554, 1321
SaqAI TTAA 5 cut(s) 63, 777, 1178, 1320, 1708
SatI GCNGC 3 cut(s) 39, 1593, 1596
Sau3AI GATC 6 cut(s) 130, 174, 184, 772, 1342, 1680
SchI GAGTC 5 cut(s) 109, 218, 369, 493, 628
ScrFI CCNGG 1 cut(s) 1258
SduI GDGCHC 2 cut(s) 931, 1657
SfaNI GCATC 3 cut(s) 193, 624, 694
SfuI TTCGAA 1 cut(s) 1397
SmiMI CAYNNNNRTG 3 cut(s) 57, 554, 1321
SmlI CTYRAG 1 cut(s) 591
SmoI CTYRAG 1 cut(s) 591
SphI GCATGC 1 cut(s) 559
SseBI AGGCCT 1 cut(s) 539
SsiI CCGC 1 cut(s) 27
StuI AGGCCT 1 cut(s) 539
StyD4I CCNGG 1 cut(s) 1256
StyI CCWWGG 1 cut(s) 505
TaaI ACNGT 2 cut(s) 692, 1084
TaiI ACGT 2 cut(s) 1131, 1453
TaqI TCGA 5 cut(s) 177, 273, 1397, 1612, 1698
TatI WGTACW 1 cut(s) 1206
TfiI GAWTC 5 cut(s) 270, 1033, 1294, 1333, 1475
Tru1I TTAA 5 cut(s) 63, 777, 1178, 1320, 1708
Tru9I TTAA 5 cut(s) 63, 777, 1178, 1320, 1708
TscAI CASTG 5 cut(s) 364, 931, 1087, 1257, 1695
TseFI GTSAC 3 cut(s) 101, 210, 1196
TseI GCWGC 3 cut(s) 38, 1592, 1595
Tsp45I GTSAC 3 cut(s) 101, 210, 1196
TspDTI ATGAA 7 cut(s) 159, 489, 993, 1104, 1116, 1326, 1541
TspGWI ACGGA 1 cut(s) 443
TspRI CASTG 5 cut(s) 364, 931, 1087, 1257, 1695
Van91I CCANNNNNTGG 1 cut(s) 1242
XapI RAATTY 4 cut(s) 45, 420, 725, 1583
XceI RCATGY 2 cut(s) 559, 587
XmiI GTMKAC 1 cut(s) 5
Zsp2I ATGCAT 3 cut(s) 628, 1243, 1628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.