Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000674.1

Orthogroup ID

OG0000768

Physical Location & Seq

Genomic Coordinates Reverse (-)

51702 .. 53604

Gene Structure 1903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000674.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

atggattgtgacggcaactttaaggattgccattgcaaagatgtcaaaggcatgctaagtttgtatgaagcttcattccttggtattgaaggagaaaccctcttggatgaggctcttgcattcactagcctgcacctaaagaacctcagtagattgcatgttactcaagacaaaggtgtattagagcaagtgagtcatgcattggagatgccattgcaccacagaatgcaaagattagaagctagatggtttattgaggtatacagtaaaaagacatatgaaaatcaggtgctacttgaatttgccaagctagattacaatgtggtgcaacaaacataccaaagagattttaaagatatttcaaggtggtggaaggatacggggttagcaaagaagttgtccttcaacagagacagactgatggagttgttcttttggtcagttggtatagtgtctgaacctcaattcagcgatgttaggaaagggataactaaagtcagtgctctaataacgactattgatgatgtctatgatgtttatggtactttggatgaactacagctattcacatctgctgttgaaagatggggtgtgaatgctgtggaaattttttcagactaccagctgaagctctgtttccttgctctctataacactgtgaatgaaatgacttacgaaactttgaaggagcaaggagtgaacgttcttccttacctgacaaaagcttgggctgatatgtgcaaatcttggttaacggaggcagagtggcgtcacaacaagtacacacctacatttgacgaatatcttgccaatgcatggatatcagtgtccggggtggtcattctggtccatacctactttctactcaatcaaaatatctcagatgaagcactcaaatgcttagagaatcaccatgatctcttgcgttggccgtctgttatttttcggctcttaaatgatttggctacttcaaaggcagaactagagagaggtgaaactgcaacttcaatatcctgcatcaaacgtggtggttttgtttctgatgaggaatctgctcacaaatatattagtaatttgattgagagtagttggaagaagatgaacaaagatggactaatatttggtgccaatagtgcttcttctccattcacaaaagaatttgtagcagcagcaacaaaccttgctcgaattgcccaatgtatctaccaatatggagacgggattggtgccccggataaaagagtaaagaaccggatcctagcagtgattgtacaacccgtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00900 ko01110 map00900 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

427

Amino Acids

48.96

Weight (kDa)

5.73

Isoelectric Point (pI)

29.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24210 AT3G25810 AT3G25820 AT3G25820 AT3G25820 AT3G25820 AT3G25830 AT4G16730 AT4G16730 AT4G16740 AT4G16740 AT4G16740 AT4G16740
fragaria_vesca	FvH4_6g43791 FvH4_6g43792 FvH4_6g43792 FvH4_6g43793 FvH4_6g43794 FvH4_6g43820 FvH4_6g44544 FvH4_6g45600
malus_domestica	MD08G1157700.v1.1 MD17G1090000.v1.1 MD17G1090100.v1.1 MD17G1090400.v1.1
pyrus_communis	pycom17g08710 pycom17g08720
rosa_chinensis	RchiOBHm_Chr2g0160561 RchiOBHm_Chr2g0160591 RchiOBHm_Chr3g0484891 RchiOBHm_Chr6g0252721
rosa_laevigata	RLG00000015069 RLG00000021224 RLG00000023189 RLG00000023190 RLG00000023196 RLG00000023197
rosa_multiflora	Rmu_co8462617.1_g000001 Rmu_sc0000674.1_g000010 Rmu_sc0001689.1_g000022 Rmu_sc0003707.1_g000003 Rmu_sc0005946.1_g000007 Rmu_sc0006653.1_g000017 Rmu_sc0012232.1_g000001
rosa_roxburghii	Rroxscaffold_6G00397380
rosa_rugosa	Rorug02G0483700 Rorug02G0483800 Rorug02G0483900 Rorug02G0484000 Rorug02G0484000 Rorug03G0214100
rosa_samantha	Rh2AG549100 Rh2BG562800 Rh2BG563300 Rh2CG533400 Rh2DG572200 Rh2DG572300 Rh3AG264500 Rh3BG300000 Rh3CG297600 Rh3DG293400 Rh3DG293600 Rh6AG054500 Rh6BG048300 Rh6DG042600
rosa_wichuraiana	Rw2G045460 Rw2G045470 Rw3G023600 Rw3G023610 Rw6G004920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	1124, 1226
AccB7I	CCANNNNNTGG	1 cut(s)	816
AccI	GTMKAC	1 cut(s)	261
AclI	AACGTT	1 cut(s)	702
AclWI	GGATC	2 cut(s)	1249, 1262
AcoI	YGGCCR	1 cut(s)	929
AcsI	RAATTY	3 cut(s)	299, 606, 1157
AcuI	CTGAAG	1 cut(s)	647
AcyI	GRCGYC	1 cut(s)	769
AfaI	GTAC	3 cut(s)	544, 782, 1272
AfiI	CCNNNNNNNGG	1 cut(s)	816
AgsI	TTSAA	8 cut(s)	89, 299, 363, 406, 581, 685, 972, 1008
AloI	GAACNNNNNNTCC	2 cut(s)	687, 719
AluBI	AGCT	7 cut(s)	71, 242, 310, 562, 625, 631, 725
AluI	AGCT	7 cut(s)	71, 242, 310, 562, 625, 631, 725
Alw21I	GWGCWC	1 cut(s)	505
Alw26I	GTCTC	2 cut(s)	405, 1209
AlwI	GGATC	2 cut(s)	1249, 1262
AoxI	GGCC	1 cut(s)	929
ApeKI	GCWGC	2 cut(s)	1166, 1169
ApoI	RAATTY	3 cut(s)	299, 606, 1157
ArsI	GACNNNNNNTTYG	2 cut(s)	383, 415
AspS9I	GGNCC	1 cut(s)	847
AsuC2I	CCSGG	2 cut(s)	832, 1232
AsuHPI	GGTGA	2 cut(s)	902, 1004
AvaII	GGWCC	1 cut(s)	847
BaeGI	GKGCMC	1 cut(s)	1231
BamHI	GGATCC	1 cut(s)	1254
BanI	GGYRCC	2 cut(s)	1124, 1226
Bbv12I	GWGCWC	1 cut(s)	505
BbvI	GCAGC	2 cut(s)	1178, 1181
BccI	CCATC	4 cut(s)	240, 415, 579, 1103
BceAI	ACGGC	2 cut(s)	28, 916
BcgI	CGANNNNNNTGC	2 cut(s)	788, 822
BciVI	GTATCC	1 cut(s)	370
BcnI	CCSGG	2 cut(s)	832, 1232
BcoDI	GTCTC	2 cut(s)	405, 1209
BfaI	CTAG	5 cut(s)	126, 243, 311, 983, 1259
BfmI	CTRYAG	1 cut(s)	557
BfuI	GTATCC	1 cut(s)	370
BisI	GCNGC	2 cut(s)	1167, 1170
BlsI	GCNGC	2 cut(s)	1168, 1171
Bme1390I	CCNGG	2 cut(s)	832, 1232
Bme18I	GGWCC	1 cut(s)	847
BmgT120I	GGNCC	1 cut(s)	847
BmiI	GGNNCC	3 cut(s)	1126, 1228, 1256
BmrFI	CCNGG	2 cut(s)	832, 1232
BmsI	GCATC	2 cut(s)	198, 1026
BplI	GAGNNNNNCTC	2 cut(s)	84, 116
BpuEI	CTTGAG	1 cut(s)	150
BpuMI	CCSGG	2 cut(s)	832, 1232
BsaHI	GRCGYC	1 cut(s)	769
BsaJI	CCNNGG	3 cut(s)	79, 831, 1230
BsaWI	WCCGGW	1 cut(s)	1251
BsaXI	ACNNNNNCTCC	4 cut(s)	687, 717, 749, 779
Bsc4I	CCNNNNNNNGG	1 cut(s)	816
Bse3DI	GCAATG	2 cut(s)	31, 212
BseDI	CCNNGG	3 cut(s)	79, 831, 1230
BseGI	GGATG	2 cut(s)	112, 556
BseLI	CCNNNNNNNGG	1 cut(s)	816
BseMI	GCAATG	2 cut(s)	31, 212
BseMII	CTCAG	2 cut(s)	160, 894
BseSI	GKGCMC	1 cut(s)	1231
BseXI	GCAGC	2 cut(s)	1178, 1181
BsgI	GTGCAG	1 cut(s)	116
BshFI	GGCC	1 cut(s)	931
BshNI	GGYRCC	2 cut(s)	1124, 1226
BsiHKAI	GWGCWC	1 cut(s)	505
BsiSI	CCGG	3 cut(s)	831, 1232, 1252
BslI	CCNNNNNNNGG	1 cut(s)	816
BsmAI	GTCTC	2 cut(s)	405, 1209
BsmBI	CGTCTC	1 cut(s)	1209
BsmI	GAATGC	3 cut(s)	119, 231, 601
BsnI	GGCC	1 cut(s)	931
Bsp1286I	GDGCHC	2 cut(s)	505, 1231
Bsp1407I	TGTACA	1 cut(s)	1270
Bsp143I	GATC	2 cut(s)	916, 1254
BspANI	GGCC	1 cut(s)	931
BspCNI	CTCAG	2 cut(s)	159, 893
BspLI	GGNNCC	3 cut(s)	1126, 1228, 1256
BspPI	GGATC	2 cut(s)	1249, 1262
BspT107I	GGYRCC	2 cut(s)	1124, 1226
BsrDI	GCAATG	2 cut(s)	31, 212
BsrGI	TGTACA	1 cut(s)	1270
BssECI	CCNNGG	3 cut(s)	79, 831, 1230
BssMI	GATC	2 cut(s)	916, 1254
BssNAI	GTATAC	1 cut(s)	262
BssNI	GRCGYC	1 cut(s)	769
BssT1I	CCWWGG	1 cut(s)	79
Bst1107I	GTATAC	1 cut(s)	262
Bst4CI	ACNGT	2 cut(s)	266, 658
BstACI	GRCGYC	1 cut(s)	769
BstAUI	TGTACA	1 cut(s)	1270
BstC8I	GCNNGC	2 cut(s)	53, 131
BstDEI	CTNAG	4 cut(s)	56, 146, 880, 901
BstF5I	GGATG	2 cut(s)	112, 556
BstKTI	GATC	2 cut(s)	919, 1257
BstMAI	GTCTC	2 cut(s)	405, 1209
BstMBI	GATC	2 cut(s)	916, 1254
BstMWI	GCNNNNNNNGC	2 cut(s)	1133, 1190
BstNSI	RCATGY	2 cut(s)	55, 161
BstSCI	CCNGG	2 cut(s)	830, 1230
BstSFI	CTRYAG	1 cut(s)	557
BstSLI	GKGCMC	1 cut(s)	1231
BstV1I	GCAGC	2 cut(s)	1178, 1181
BstX2I	RGATCY	1 cut(s)	1254
BstYI	RGATCY	1 cut(s)	1254
BstZ17I	GTATAC	1 cut(s)	262
BsuI	GTATCC	1 cut(s)	370
BsuRI	GGCC	1 cut(s)	931
BtgZI	GCGATG	1 cut(s)	486
BtsCI	GGATG	2 cut(s)	112, 556
BtsI	GCAGTG	1 cut(s)	1269
BtsIMutI	CAGTG	4 cut(s)	505, 654, 831, 1269
Cac8I	GCNNGC	2 cut(s)	53, 131
Cfr13I	GGNCC	1 cut(s)	847
CseI	GACGC	1 cut(s)	758
Csp6I	GTAC	3 cut(s)	543, 781, 1271
CspCI	CAANNNNNGTGG	2 cut(s)	1009, 1044
CviAII	CATG	5 cut(s)	52, 158, 197, 816, 914
CviQI	GTAC	3 cut(s)	543, 781, 1271
DdeI	CTNAG	4 cut(s)	56, 146, 880, 901
DpnI	GATC	2 cut(s)	918, 1256
DpnII	GATC	2 cut(s)	916, 1254
DraI	TTTAAA	1 cut(s)	352
EaeI	YGGCCR	1 cut(s)	929
Eco130I	CCWWGG	1 cut(s)	79
Eco32I	GATATC	1 cut(s)	822
Eco47I	GGWCC	1 cut(s)	847
Eco57I	CTGAAG	1 cut(s)	647
EcoRV	GATATC	1 cut(s)	822
EcoT14I	CCWWGG	1 cut(s)	79
EcoT22I	ATGCAT	2 cut(s)	202, 817
ErhI	CCWWGG	1 cut(s)	79
Esp3I	CGTCTC	1 cut(s)	1209
FaeI	CATG	5 cut(s)	55, 161, 200, 819, 917
FalI	AAGNNNNNCTT	2 cut(s)	386, 418
FatI	CATG	5 cut(s)	51, 157, 196, 815, 913
FauNDI	CATATG	1 cut(s)	277
FblI	GTMKAC	1 cut(s)	261
Fnu4HI	GCNGC	2 cut(s)	1167, 1170
FokI	GGATG	2 cut(s)	119, 563
Fsp4HI	GCNGC	2 cut(s)	1167, 1170
FspBI	CTAG	5 cut(s)	126, 243, 311, 983, 1259
GluI	GCNGC	2 cut(s)	1167, 1170
HaeIII	GGCC	1 cut(s)	931
HapII	CCGG	3 cut(s)	831, 1232, 1252
HgaI	GACGC	1 cut(s)	758
Hin1I	GRCGYC	1 cut(s)	769
Hin1II	CATG	5 cut(s)	55, 161, 200, 819, 917
HincII	GTYRAC	1 cut(s)	753
HindII	GTYRAC	1 cut(s)	753
HindIII	AAGCTT	2 cut(s)	69, 723
HinfI	GANTC	3 cut(s)	193, 907, 1049
HpaI	GTTAAC	1 cut(s)	753
HpaII	CCGG	3 cut(s)	831, 1232, 1252
HphI	GGTGA	2 cut(s)	902, 1004
Hpy166II	GTNNAC	4 cut(s)	262, 700, 753, 783
Hpy188I	TCNGA	4 cut(s)	457, 616, 883, 1042
Hpy188III	TCNNGA	1 cut(s)	167
Hpy8I	GTNNAC	4 cut(s)	262, 700, 753, 783
HpyAV	CCTTC	4 cut(s)	83, 367, 412, 679
HpyCH4III	ACNGT	2 cut(s)	266, 658
HpyCH4IV	ACGT	2 cut(s)	702, 1024
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1133, 1190
HpyF3I	CTNAG	4 cut(s)	56, 146, 880, 901
HpySE526I	ACGT	2 cut(s)	702, 1024
Hsp92I	GRCGYC	1 cut(s)	769
Hsp92II	CATG	5 cut(s)	55, 161, 200, 819, 917
KspAI	GTTAAC	1 cut(s)	753
Kzo9I	GATC	2 cut(s)	916, 1254
LmnI	GCTCC	1 cut(s)	688
LpnPI	CCDG	9 cut(s)	143, 272, 635, 728, 830, 844, 1027, 1245, 1265
Lsp1109I	GCAGC	2 cut(s)	1178, 1181
LweI	GCATC	2 cut(s)	198, 1026
MaeI	CTAG	5 cut(s)	126, 243, 311, 983, 1259
MaeII	ACGT	2 cut(s)	702, 1024
MaeIII	GTNAC	3 cut(s)	8, 160, 770
MalI	GATC	2 cut(s)	918, 1256
MboI	GATC	2 cut(s)	916, 1254
MboII	GAAGA	4 cut(s)	698, 1105, 1108, 1131
MflI	RGATCY	1 cut(s)	1254
MhlI	GDGCHC	2 cut(s)	505, 1231
MluCI	AATT	6 cut(s)	299, 464, 606, 1072, 1157, 1188
MlyI	GAGTC	1 cut(s)	202
MmeI	TCCRAC	1 cut(s)	1070
MnlI	CCTC	8 cut(s)	103, 110, 155, 250, 471, 751, 983, 1039
Mph1103I	ATGCAT	2 cut(s)	202, 817
MseI	TTAA	4 cut(s)	21, 351, 752, 953
MslI	CAYNNNNRTG	1 cut(s)	895
MspA1I	CMGCKG	1 cut(s)	625
MspI	CCGG	3 cut(s)	831, 1232, 1252
MspR9I	CCNGG	2 cut(s)	832, 1232
Mva1269I	GAATGC	3 cut(s)	119, 231, 601
MwoI	GCNNNNNNNGC	2 cut(s)	1133, 1190
NciI	CCSGG	2 cut(s)	832, 1232
NdeI	CATATG	1 cut(s)	277
NdeII	GATC	2 cut(s)	916, 1254
NlaIII	CATG	5 cut(s)	55, 161, 200, 819, 917
NlaIV	GGNNCC	3 cut(s)	1126, 1228, 1256
NmuCI	GTSAC	2 cut(s)	8, 770
NsiI	ATGCAT	2 cut(s)	202, 817
NspI	RCATGY	2 cut(s)	55, 161
PaeI	GCATGC	1 cut(s)	55
PctI	GAATGC	3 cut(s)	119, 231, 601
PfeI	GAWTC	2 cut(s)	907, 1049
PflMI	CCANNNNNTGG	1 cut(s)	816
PkrI	GCNGC	2 cut(s)	1168, 1171
PleI	GAGTC	1 cut(s)	201
PpsI	GAGTC	1 cut(s)	201
Psp1406I	AACGTT	1 cut(s)	702
PspN4I	GGNNCC	3 cut(s)	1126, 1228, 1256
PspPI	GGNCC	1 cut(s)	847
PsuI	RGATCY	1 cut(s)	1254
PvuII	CAGCTG	1 cut(s)	625
RsaI	GTAC	3 cut(s)	544, 782, 1272
RsaNI	GTAC	3 cut(s)	543, 781, 1271
RseI	CAYNNNNRTG	1 cut(s)	895
SaqAI	TTAA	4 cut(s)	21, 351, 752, 953
SatI	GCNGC	2 cut(s)	1167, 1170
Sau3AI	GATC	2 cut(s)	916, 1254
Sau96I	GGNCC	1 cut(s)	847
SchI	GAGTC	1 cut(s)	202
ScrFI	CCNGG	2 cut(s)	832, 1232
SduI	GDGCHC	2 cut(s)	505, 1231
SfaNI	GCATC	2 cut(s)	198, 1026
SfcI	CTRYAG	1 cut(s)	557
SinI	GGWCC	1 cut(s)	847
SmiMI	CAYNNNNRTG	1 cut(s)	895
SmlI	CTYRAG	1 cut(s)	165
SmoI	CTYRAG	1 cut(s)	165
SphI	GCATGC	1 cut(s)	55
Sse9I	AATT	6 cut(s)	299, 464, 606, 1072, 1157, 1188
SspI	AATATT	1 cut(s)	1119
SspMI	CTAG	5 cut(s)	126, 243, 311, 983, 1259
StyD4I	CCNGG	2 cut(s)	830, 1230
StyI	CCWWGG	1 cut(s)	79
TaaI	ACNGT	2 cut(s)	266, 658
TaiI	ACGT	2 cut(s)	705, 1027
TaqI	TCGA	1 cut(s)	1186
TasI	AATT	6 cut(s)	299, 464, 606, 1072, 1157, 1188
TatI	WGTACW	2 cut(s)	780, 1270
TfiI	GAWTC	2 cut(s)	907, 1049
Tru1I	TTAA	4 cut(s)	21, 351, 752, 953
Tru9I	TTAA	4 cut(s)	21, 351, 752, 953
TscAI	CASTG	4 cut(s)	505, 661, 831, 1269
TseFI	GTSAC	2 cut(s)	8, 770
TseI	GCWGC	2 cut(s)	1166, 1169
Tsp45I	GTSAC	2 cut(s)	8, 770
TspDTI	ATGAA	7 cut(s)	63, 81, 294, 567, 678, 900, 1115
TspGWI	ACGGA	1 cut(s)	770
TspRI	CASTG	4 cut(s)	505, 661, 831, 1269
Van91I	CCANNNNNTGG	1 cut(s)	816
VpaK11BI	GGWCC	1 cut(s)	847
XapI	RAATTY	3 cut(s)	299, 606, 1157
XceI	RCATGY	2 cut(s)	55, 161
XmiI	GTMKAC	1 cut(s)	261
XspI	CTAG	5 cut(s)	126, 243, 311, 983, 1259
Zsp2I	ATGCAT	2 cut(s)	202, 817

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.