Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003707.1

Orthogroup ID

OG0000768

Physical Location & Seq

Genomic Coordinates Reverse (-)

3774 .. 5704

Gene Structure 1931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003707.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

atgttcccatcagatgtcttcaaaattttcacggactacaatggcagctttaaagattgcctttgcaaagatgtgaaaggaatgttaagtctgtacgaagcttcattccttggtattgaaggagaaaccctcttagatgaggcctttgcattcaccagcatgcatctaaaaaacctcaacagattccatgttattgaaggcaaaggtgtattagagcaagtgagtcatgcattggagatgccattgcaccacagaatgcaaagactagaagctagatggtatattgaggcatacagtaaaaaggcaaatgcaaatcaggtgctacttgaatttgccaagctagattacaatgtggtgcaacaaacataccaaagagaccttaaagacatttcaaggtggtggaaggacacagggttagcaaagaagttatccttcagcagagacagactgatggagttgttcttttggtcagttggtatagtgtctgaacctcaattcagcaatcttagaaaagaaataactaaagtcagtgctctaataacgactattgatgatgtctatgatgtttatggtactttggatgaaatggagctattcacatcaattgttgaaagtggccatatgttgatgatgacctgtgctctcacatcttgcttgcatattgattctcagtgggctgatatgtgcaaatcttggttaactgaggcagagtggcgtcacaacaagtacacacctacatttgaagaatatcttgccaatgcatggatatcagtgtccggggtggtcattctagtccatacctactttctactgaaccaaaatatctcaaatgaagcacttaaatgcttagagaatcaccatgatctcttgcgttggccgtctcttatttttcggctctcaaatgatttggttacttcaaaggcagaattagagagtggtgaaactgcaacttcaatatcctgcatcatatgtggtggtggtgtttctgatgaggaatctgctttcaaacatattaggaatttgattaacaatagttggaagaagatgaataaagatggactactatttggtgttagcactgcttcttctccattcacaaaggaatttgtagcagcagcaacaaaccttgctcggattgcccaatgcatttaccaatatggagacgggattggtgccccaaacaaaagagtaaagaatcggatcctagcagtgattgtacaacccatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00900 ko01110 map00900 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

409

Amino Acids

46.64

Weight (kDa)

5.97

Isoelectric Point (pI)

35.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24210 AT3G25810 AT3G25820 AT3G25820 AT3G25820 AT3G25820 AT3G25830 AT4G16730 AT4G16730 AT4G16740 AT4G16740 AT4G16740 AT4G16740
fragaria_vesca	FvH4_6g43791 FvH4_6g43792 FvH4_6g43792 FvH4_6g43793 FvH4_6g43794 FvH4_6g43820 FvH4_6g44544 FvH4_6g45600
malus_domestica	MD08G1157700.v1.1 MD17G1090000.v1.1 MD17G1090100.v1.1 MD17G1090400.v1.1
pyrus_communis	pycom17g08710 pycom17g08720
rosa_chinensis	RchiOBHm_Chr2g0160561 RchiOBHm_Chr2g0160591 RchiOBHm_Chr3g0484891 RchiOBHm_Chr6g0252721
rosa_laevigata	RLG00000015069 RLG00000021224 RLG00000023189 RLG00000023190 RLG00000023196 RLG00000023197
rosa_multiflora	Rmu_co8462617.1_g000001 Rmu_sc0000674.1_g000010 Rmu_sc0001689.1_g000022 Rmu_sc0003707.1_g000003 Rmu_sc0005946.1_g000007 Rmu_sc0006653.1_g000017 Rmu_sc0012232.1_g000001
rosa_roxburghii	Rroxscaffold_6G00397380
rosa_rugosa	Rorug02G0483700 Rorug02G0483800 Rorug02G0483900 Rorug02G0484000 Rorug02G0484000 Rorug03G0214100
rosa_samantha	Rh2AG549100 Rh2BG562800 Rh2BG563300 Rh2CG533400 Rh2DG572200 Rh2DG572300 Rh3AG264500 Rh3BG300000 Rh3CG297600 Rh3DG293400 Rh3DG293600 Rh6AG054500 Rh6BG048300 Rh6DG042600
rosa_wichuraiana	Rw2G045460 Rw2G045470 Rw3G023600 Rw3G023610 Rw6G004920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1172
AccB7I	CCANNNNNTGG	1 cut(s)	762
AclWI	GGATC	2 cut(s)	1195, 1208
AcoI	YGGCCR	2 cut(s)	616, 875
AcsI	RAATTY	4 cut(s)	24, 329, 1018, 1103
AcuI	CTGAAG	1 cut(s)	418
AcyI	GRCGYC	1 cut(s)	715
AfaI	GTAC	4 cut(s)	95, 574, 728, 1218
AfiI	CCNNNNNNNGG	1 cut(s)	762
AluBI	AGCT	5 cut(s)	48, 101, 272, 340, 592
AluI	AGCT	5 cut(s)	48, 101, 272, 340, 592
Alw21I	GWGCWC	2 cut(s)	535, 643
Alw26I	GTCTC	4 cut(s)	369, 435, 885, 1155
AlwI	GGATC	2 cut(s)	1195, 1208
AoxI	GGCC	3 cut(s)	141, 616, 875
ApeKI	GCWGC	3 cut(s)	45, 1112, 1115
ApoI	RAATTY	4 cut(s)	24, 329, 1018, 1103
AsuC2I	CCSGG	1 cut(s)	778
AsuHPI	GGTGA	3 cut(s)	145, 848, 950
BaeGI	GKGCMC	1 cut(s)	1177
BalI	TGGCCA	1 cut(s)	618
BamHI	GGATCC	1 cut(s)	1200
BanI	GGYRCC	1 cut(s)	1172
BbsI	GAAGAC	1 cut(s)	10
Bbv12I	GWGCWC	2 cut(s)	535, 643
BbvI	GCAGC	3 cut(s)	57, 1124, 1127
BccI	CCATC	4 cut(s)	16, 270, 445, 1049
BceAI	ACGGC	1 cut(s)	862
BcnI	CCSGG	1 cut(s)	778
BcoDI	GTCTC	4 cut(s)	369, 435, 885, 1155
BfaI	CTAG	5 cut(s)	266, 273, 341, 791, 1205
BisI	GCNGC	3 cut(s)	46, 1113, 1116
BlsI	GCNGC	3 cut(s)	47, 1114, 1117
Bme1390I	CCNGG	1 cut(s)	778
BmiI	GGNNCC	2 cut(s)	1174, 1202
BmrFI	CCNGG	1 cut(s)	778
BmsI	GCATC	3 cut(s)	172, 228, 972
BpiI	GAAGAC	1 cut(s)	10
BplI	GAGNNNNNCTC	2 cut(s)	114, 146
BpuMI	CCSGG	1 cut(s)	778
BsaHI	GRCGYC	1 cut(s)	715
BsaI	GGTCTC	1 cut(s)	369
BsaJI	CCNNGG	2 cut(s)	109, 777
Bsc4I	CCNNNNNNNGG	1 cut(s)	762
Bse3DI	GCAATG	1 cut(s)	242
BseDI	CCNNGG	2 cut(s)	109, 777
BseGI	GGATG	1 cut(s)	586
BseLI	CCNNNNNNNGG	1 cut(s)	762
BseMI	GCAATG	1 cut(s)	242
BseMII	CTCAG	2 cut(s)	683, 693
BseSI	GKGCMC	1 cut(s)	1177
BseXI	GCAGC	3 cut(s)	57, 1124, 1127
BshFI	GGCC	3 cut(s)	143, 618, 877
BshNI	GGYRCC	1 cut(s)	1172
BsiHKAI	GWGCWC	2 cut(s)	535, 643
BsiSI	CCGG	1 cut(s)	777
BslI	CCNNNNNNNGG	1 cut(s)	762
BsmAI	GTCTC	4 cut(s)	369, 435, 885, 1155
BsmBI	CGTCTC	2 cut(s)	885, 1155
BsmI	GAATGC	2 cut(s)	149, 261
BsnI	GGCC	3 cut(s)	143, 618, 877
Bso31I	GGTCTC	1 cut(s)	369
Bsp1286I	GDGCHC	3 cut(s)	535, 643, 1177
Bsp1407I	TGTACA	1 cut(s)	1216
Bsp143I	GATC	2 cut(s)	862, 1200
BspANI	GGCC	3 cut(s)	143, 618, 877
BspCNI	CTCAG	2 cut(s)	682, 694
BspLI	GGNNCC	2 cut(s)	1174, 1202
BspPI	GGATC	2 cut(s)	1195, 1208
BspT107I	GGYRCC	1 cut(s)	1172
BspTNI	GGTCTC	1 cut(s)	369
BsrDI	GCAATG	1 cut(s)	242
BsrGI	TGTACA	1 cut(s)	1216
BssECI	CCNNGG	2 cut(s)	109, 777
BssMI	GATC	2 cut(s)	862, 1200
BssNI	GRCGYC	1 cut(s)	715
BssT1I	CCWWGG	1 cut(s)	109
Bst4CI	ACNGT	1 cut(s)	296
BstACI	GRCGYC	1 cut(s)	715
BstAUI	TGTACA	1 cut(s)	1216
BstC8I	GCNNGC	2 cut(s)	161, 656
BstDEI	CTNAG	5 cut(s)	133, 506, 669, 702, 847
BstF5I	GGATG	1 cut(s)	586
BstKTI	GATC	2 cut(s)	865, 1203
BstMAI	GTCTC	4 cut(s)	369, 435, 885, 1155
BstMBI	GATC	2 cut(s)	862, 1200
BstMWI	GCNNNNNNNGC	1 cut(s)	1136
BstNSI	RCATGY	1 cut(s)	163
BstSCI	CCNGG	1 cut(s)	776
BstSLI	GKGCMC	1 cut(s)	1177
BstV1I	GCAGC	3 cut(s)	57, 1124, 1127
BstV2I	GAAGAC	1 cut(s)	10
BstX2I	RGATCY	1 cut(s)	1200
BstYI	RGATCY	1 cut(s)	1200
BsuRI	GGCC	3 cut(s)	143, 618, 877
BtsCI	GGATG	1 cut(s)	586
BtsI	GCAGTG	2 cut(s)	1077, 1215
BtsIMutI	CAGTG	5 cut(s)	535, 677, 777, 1077, 1215
Cac8I	GCNNGC	2 cut(s)	161, 656
CseI	GACGC	1 cut(s)	704
Csp6I	GTAC	4 cut(s)	94, 573, 727, 1217
CviAII	CATG	5 cut(s)	160, 188, 227, 762, 860
CviQI	GTAC	4 cut(s)	94, 573, 727, 1217
DdeI	CTNAG	5 cut(s)	133, 506, 669, 702, 847
DpnI	GATC	2 cut(s)	864, 1202
DpnII	GATC	2 cut(s)	862, 1200
DraI	TTTAAA	1 cut(s)	52
EaeI	YGGCCR	2 cut(s)	616, 875
Eco130I	CCWWGG	1 cut(s)	109
Eco147I	AGGCCT	1 cut(s)	143
Eco31I	GGTCTC	1 cut(s)	369
Eco32I	GATATC	1 cut(s)	768
Eco57I	CTGAAG	1 cut(s)	418
EcoRV	GATATC	1 cut(s)	768
EcoT14I	CCWWGG	1 cut(s)	109
EcoT22I	ATGCAT	4 cut(s)	165, 232, 763, 1148
ErhI	CCWWGG	1 cut(s)	109
Esp3I	CGTCTC	2 cut(s)	885, 1155
FaeI	CATG	5 cut(s)	163, 191, 230, 765, 863
FalI	AAGNNNNNCTT	6 cut(s)	45, 77, 416, 448, 735, 767
FatI	CATG	5 cut(s)	159, 187, 226, 761, 859
FauNDI	CATATG	2 cut(s)	621, 968
Fnu4HI	GCNGC	3 cut(s)	46, 1113, 1116
FokI	GGATG	1 cut(s)	593
Fsp4HI	GCNGC	3 cut(s)	46, 1113, 1116
FspBI	CTAG	5 cut(s)	266, 273, 341, 791, 1205
GluI	GCNGC	3 cut(s)	46, 1113, 1116
HaeIII	GGCC	3 cut(s)	143, 618, 877
HapII	CCGG	1 cut(s)	777
HgaI	GACGC	1 cut(s)	704
Hin1I	GRCGYC	1 cut(s)	715
Hin1II	CATG	5 cut(s)	163, 191, 230, 765, 863
HincII	GTYRAC	1 cut(s)	699
HindII	GTYRAC	1 cut(s)	699
HindIII	AAGCTT	1 cut(s)	99
HinfI	GANTC	6 cut(s)	183, 223, 665, 853, 995, 1195
HpaI	GTTAAC	1 cut(s)	699
HpaII	CCGG	1 cut(s)	777
HphI	GGTGA	3 cut(s)	145, 848, 950
Hpy166II	GTNNAC	2 cut(s)	699, 729
Hpy188I	TCNGA	5 cut(s)	13, 487, 988, 1134, 1200
Hpy8I	GTNNAC	2 cut(s)	699, 729
HpyAV	CCTTC	4 cut(s)	113, 191, 397, 442
HpyCH4III	ACNGT	1 cut(s)	296
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1136
HpyF3I	CTNAG	5 cut(s)	133, 506, 669, 702, 847
Hsp92I	GRCGYC	1 cut(s)	715
Hsp92II	CATG	5 cut(s)	163, 191, 230, 765, 863
KspAI	GTTAAC	1 cut(s)	699
Kzo9I	GATC	2 cut(s)	862, 1200
LmnI	GCTCC	1 cut(s)	589
LpnPI	CCDG	6 cut(s)	169, 302, 396, 649, 790, 973
Lsp1109I	GCAGC	3 cut(s)	57, 1124, 1127
LweI	GCATC	3 cut(s)	172, 228, 972
MaeI	CTAG	5 cut(s)	266, 273, 341, 791, 1205
MaeIII	GTNAC	2 cut(s)	716, 910
MalI	GATC	2 cut(s)	864, 1202
MboI	GATC	2 cut(s)	862, 1200
MboII	GAAGA	5 cut(s)	10, 755, 1051, 1054, 1077
MfeI	CAATTG	1 cut(s)	603
MflI	RGATCY	1 cut(s)	1200
MhlI	GDGCHC	3 cut(s)	535, 643, 1177
MlsI	TGGCCA	1 cut(s)	618
MluCI	AATT	7 cut(s)	24, 329, 494, 603, 926, 1018, 1103
MluNI	TGGCCA	1 cut(s)	618
MlyI	GAGTC	1 cut(s)	232
MmeI	TCCRAC	1 cut(s)	1016
MnlI	CCTC	7 cut(s)	133, 140, 185, 280, 501, 697, 985
Mox20I	TGGCCA	1 cut(s)	618
Mph1103I	ATGCAT	4 cut(s)	165, 232, 763, 1148
MscI	TGGCCA	1 cut(s)	618
MseI	TTAA	7 cut(s)	51, 86, 381, 698, 840, 1026, 1228
MslI	CAYNNNNRTG	2 cut(s)	158, 841
Msp20I	TGGCCA	1 cut(s)	618
MspI	CCGG	1 cut(s)	777
MspR9I	CCNGG	1 cut(s)	778
MunI	CAATTG	1 cut(s)	603
Mva1269I	GAATGC	2 cut(s)	149, 261
MwoI	GCNNNNNNNGC	1 cut(s)	1136
NciI	CCSGG	1 cut(s)	778
NdeI	CATATG	2 cut(s)	621, 968
NdeII	GATC	2 cut(s)	862, 1200
NlaIII	CATG	5 cut(s)	163, 191, 230, 765, 863
NlaIV	GGNNCC	2 cut(s)	1174, 1202
NmuCI	GTSAC	1 cut(s)	716
NsiI	ATGCAT	4 cut(s)	165, 232, 763, 1148
NspI	RCATGY	1 cut(s)	163
PaeI	GCATGC	1 cut(s)	163
PceI	AGGCCT	1 cut(s)	143
PctI	GAATGC	2 cut(s)	149, 261
PfeI	GAWTC	5 cut(s)	183, 665, 853, 995, 1195
PflMI	CCANNNNNTGG	1 cut(s)	762
PkrI	GCNGC	3 cut(s)	47, 1114, 1117
PleI	GAGTC	1 cut(s)	231
PpsI	GAGTC	1 cut(s)	231
PspN4I	GGNNCC	2 cut(s)	1174, 1202
PsuI	RGATCY	1 cut(s)	1200
RsaI	GTAC	4 cut(s)	95, 574, 728, 1218
RsaNI	GTAC	4 cut(s)	94, 573, 727, 1217
RseI	CAYNNNNRTG	2 cut(s)	158, 841
SaqAI	TTAA	7 cut(s)	51, 86, 381, 698, 840, 1026, 1228
SatI	GCNGC	3 cut(s)	46, 1113, 1116
Sau3AI	GATC	2 cut(s)	862, 1200
SchI	GAGTC	1 cut(s)	232
ScrFI	CCNGG	1 cut(s)	778
SduI	GDGCHC	3 cut(s)	535, 643, 1177
SfaNI	GCATC	3 cut(s)	172, 228, 972
SmiMI	CAYNNNNRTG	2 cut(s)	158, 841
SphI	GCATGC	1 cut(s)	163
Sse9I	AATT	7 cut(s)	24, 329, 494, 603, 926, 1018, 1103
SseBI	AGGCCT	1 cut(s)	143
SspMI	CTAG	5 cut(s)	266, 273, 341, 791, 1205
StuI	AGGCCT	1 cut(s)	143
StyD4I	CCNGG	1 cut(s)	776
StyI	CCWWGG	1 cut(s)	109
TaaI	ACNGT	1 cut(s)	296
TasI	AATT	7 cut(s)	24, 329, 494, 603, 926, 1018, 1103
TatI	WGTACW	2 cut(s)	726, 1216
TfiI	GAWTC	5 cut(s)	183, 665, 853, 995, 1195
Tru1I	TTAA	7 cut(s)	51, 86, 381, 698, 840, 1026, 1228
Tru9I	TTAA	7 cut(s)	51, 86, 381, 698, 840, 1026, 1228
TscAI	CASTG	5 cut(s)	535, 677, 777, 1084, 1215
TseFI	GTSAC	1 cut(s)	716
TseI	GCWGC	3 cut(s)	45, 1112, 1115
Tsp45I	GTSAC	1 cut(s)	716
TspDTI	ATGAA	4 cut(s)	93, 597, 846, 1061
TspGWI	ACGGA	1 cut(s)	47
TspRI	CASTG	5 cut(s)	535, 677, 777, 1084, 1215
Van91I	CCANNNNNTGG	1 cut(s)	762
XapI	RAATTY	4 cut(s)	24, 329, 1018, 1103
XceI	RCATGY	1 cut(s)	163
XspI	CTAG	5 cut(s)	266, 273, 341, 791, 1205
Zsp2I	ATGCAT	4 cut(s)	165, 232, 763, 1148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.