RLG00000023189

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000768
Physical Location & Seq
Forward (+)
19658542 .. 19663470
4929 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023189

Sequence Viewer

Length: 1713 bp
ATGTCTACCCAATGCTTAGCGAGCAGTGGTAGCCCTGCTGCCCAAACTTCACAGCTAGATGTTAAAAGACTGGCAGCAAATTACAAGCCAAGTATTTGGAATCATGATTTTCTTCAGTCGTTACAGATTGATGATCGTAATCATGAAGAAGTATACAAAAATAATAGGTGGAAGTTGATCGAGGAGGATCTAAAAAATATGATTGATGCAGAGTCATTAGAGCCTACACTTGAATTGATTGATGACATCCAACGATTAGGTTTGGGACACCGATTCGAGGTCAGTATAGCAGAAGCCCTTGATAAAGTTTTGAAGAATCTTGACCAAATAACAGACAAGGATACTCCAAGTCTGCACCTCACTGCTCTCAGCTTCAGACTCCTTAGACAGCATGGGTTTCAAGTCTCCCAAGATGTTTTCAAAATTTTCACAGACTGTGACGGCAGCTTCAAGGATTACCTTTGCAAAGATGTCAAAGGAATGCTGAGTTTGTACGAAGCTTCATTCCTTGGTATTGAAGGAGAAACGCTCTTAGATGAGGCTCATGCATTCACCAGCATGCACCTAAAGAACCTCAGCAGATTGCATGTTACTCAAGGCAAAGAAGTATTAGGGCAAGTGAGTCATGCATTGGAGATGCCATTGCACCACAGAATGCAAAGACTAGAAGCTAGATGGTATATTGAGGCATACAGTAAAAGGGTAGATGCAAATCAGGTGCTACTTGAATTTGCCAAGCTAGATTACAATGTGGTGCAACAAACATACCAAAGAGATCTTAAAGACATTTCAAGGTGGTGGAAGGATACGGGGTTAGCAAAAAAGTTGTCCTTCAGCAGAGATAGACTGATGGAGTTGTTCTTTTGGTCAGTTGGTATAGCGTTTGAAACTCAACTCAGCAATCTTAGAAAAGATATAACTAAAGTCAGTGCTCTAATAACGACAATTGATGATGTCTATGATGTTTATGGTACTTTGGATGAACTAGAGCTATTCACATCTGTTGTTGAAAGATGGGATGTGAATGCTGTGGAAATTCTTTCAGACTACCAGCTGAAGCTCTGTTTCCTTGCTCTCTATAACACTGTGAATGAAATGACTTATGAAACTTTGAAGGAGCAAGGAGTGAATGTCCTTCCTTACGTGAGAAAAGCTTGGGTAGATATGTGCAAATCTTGGTTAATGGAGGCCAAGTGGCGTCACAACAAGTACACACCTACATTTGAAGAATATCTTGCCAATGCATGGATATCAGTGTCTGGAGTGGTCATTCTAGTCCATACCTACTTTCTACTGAATCAAAATATCTCAGATGAAGCACTTAAATGCTTAGAGAATCACCATGATCTCTTGCGTTGGCCGTCTCTTATTTTTCGGCTCTCAAATGATTTGGTTACTTCAAAGGCAGAACTAGAGAGAGGTGAAACTGCAACTTCAATATCCTGCATCAAACGTGACGGTGTTGTTTCCGATGAGGAATCTGCTCGCAAATATATTAGTAATTTGATTGAGAATAGTTGGAAGAAGATGAACAAAGATGGACTACTATTTGGTGCTAGTAGAGCTTCTTCTCCATTCACAAAGGAATTTGTAGCAGCAGCAACAAACCTTGCTCGAATTGCCCAATGCATTTACCAATATGGAGACGGGATTGGTGCCCCGGACAAAAGAGTAAAGAACCGGATCCTAGAAGTGATTGTACAACCTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

571

Amino Acids

65.58

Weight (kDa)

5.69

Isoelectric Point (pI)

34.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 32 - 211 1.7e-49 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 268 - 509 3.9e-85 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 308 - 509 1.3e-57 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1655
AccB7I CCANNNNNTGG 1 cut(s) 1245
AccI GTMKAC 2 cut(s) 5, 153
AclWI GGATC 3 cut(s) 195, 1678, 1691
AcoI YGGCCR 1 cut(s) 1358
AcsI RAATTY 4 cut(s) 423, 728, 1035, 1586
AcuI CTGAAG 4 cut(s) 98, 358, 817, 1076
AcyI GRCGYC 1 cut(s) 1198
AfaI GTAC 4 cut(s) 494, 973, 1211, 1701
AfiI CCNNNNNNNGG 2 cut(s) 277, 1245
Alw21I GWGCWC 1 cut(s) 934
Alw26I GTCTC 3 cut(s) 409, 1368, 1638
AlwI GGATC 3 cut(s) 195, 1678, 1691
AlwNI CAGNNNCTG 1 cut(s) 1259
AoxI GGCC 2 cut(s) 1188, 1358
ApeKI GCWGC 5 cut(s) 38, 74, 444, 1595, 1598
ApoI RAATTY 4 cut(s) 423, 728, 1035, 1586
ArsI GACNNNNNNTTYG 2 cut(s) 812, 844
AsuC2I CCSGG 1 cut(s) 1661
AsuHPI GGTGA 3 cut(s) 544, 1331, 1433
BaeGI GKGCMC 1 cut(s) 1660
BamHI GGATCC 1 cut(s) 1683
BanI GGYRCC 1 cut(s) 1655
BarI GAAGNNNNNNTAC 3 cut(s) 1552, 1584, 1683
Bbv12I GWGCWC 1 cut(s) 934
BbvCI CCTCAGC 1 cut(s) 575
BbvI GCAGC 5 cut(s) 25, 86, 456, 1607, 1610
BccI CCATC 4 cut(s) 669, 844, 1008, 1532
BceAI ACGGC 2 cut(s) 457, 1345
BciVI GTATCC 2 cut(s) 334, 799
BcnI CCSGG 1 cut(s) 1661
BcoDI GTCTC 3 cut(s) 409, 1368, 1638
BfaI CTAG 9 cut(s) 56, 665, 672, 740, 986, 1274, 1412, 1557, 1688
BfuI GTATCC 2 cut(s) 334, 799
BglII AGATCT 1 cut(s) 775
BisI GCNGC 5 cut(s) 39, 75, 445, 1596, 1599
BlpI GCTNAGC 1 cut(s) 16
BlsI GCNGC 5 cut(s) 40, 76, 446, 1597, 1600
Bme1390I CCNGG 1 cut(s) 1661
BmiI GGNNCC 2 cut(s) 1657, 1685
BmrFI CCNGG 1 cut(s) 1661
BmsI GCATC 4 cut(s) 196, 627, 697, 1455
BplI GAGNNNNNCTC 2 cut(s) 513, 545
BpmI CTGGAG 1 cut(s) 1281
Bpu10I CCTNAGC 1 cut(s) 575
Bpu1102I GCTNAGC 1 cut(s) 16
BpuEI CTTGAG 1 cut(s) 579
BpuMI CCSGG 1 cut(s) 1661
BsaAI YACGTR 1 cut(s) 1144
BsaBI GATNNNNATC 2 cut(s) 138, 711
BsaHI GRCGYC 1 cut(s) 1198
BsaJI CCNNGG 2 cut(s) 508, 1659
BsaWI WCCGGW 1 cut(s) 1680
BsaXI ACNNNNNCTCC 4 cut(s) 1116, 1146, 1178, 1208
Bsc4I CCNNNNNNNGG 2 cut(s) 277, 1245
Bse1I ACTGG 1 cut(s) 75
Bse3DI GCAATG 1 cut(s) 641
Bse8I GATNNNNATC 2 cut(s) 138, 711
BseDI CCNNGG 2 cut(s) 508, 1659
BseGI GGATG 3 cut(s) 246, 985, 1024
BseJI GATNNNNATC 2 cut(s) 138, 711
BseLI CCNNNNNNNGG 2 cut(s) 277, 1245
BseMI GCAATG 1 cut(s) 641
BseMII CTCAG 5 cut(s) 382, 476, 589, 910, 1323
BseNI ACTGG 1 cut(s) 75
BseRI GAGGAG 1 cut(s) 197
BseSI GKGCMC 1 cut(s) 1660
BseXI GCAGC 5 cut(s) 25, 86, 456, 1607, 1610
BsgI GTGCAG 1 cut(s) 338
BshFI GGCC 2 cut(s) 1190, 1360
BshNI GGYRCC 1 cut(s) 1655
BsiHKAI GWGCWC 1 cut(s) 934
BsiSI CCGG 2 cut(s) 1661, 1681
BslFI GGGAC 1 cut(s) 279
BslI CCNNNNNNNGG 2 cut(s) 277, 1245
BsmAI GTCTC 3 cut(s) 409, 1368, 1638
BsmBI CGTCTC 2 cut(s) 1368, 1638
BsmFI GGGAC 1 cut(s) 279
BsmI GAATGC 4 cut(s) 486, 548, 660, 1030
BsnI GGCC 2 cut(s) 1190, 1360
Bsp1286I GDGCHC 2 cut(s) 934, 1660
Bsp1407I TGTACA 1 cut(s) 1699
Bsp143I GATC 6 cut(s) 133, 177, 187, 775, 1345, 1683
Bsp1720I GCTNAGC 1 cut(s) 16
BspANI GGCC 2 cut(s) 1190, 1360
BspCNI CTCAG 5 cut(s) 381, 477, 588, 909, 1322
BspHI TCATGA 2 cut(s) 103, 142
BspLI GGNNCC 2 cut(s) 1657, 1685
BspPI GGATC 3 cut(s) 195, 1678, 1691
BspT107I GGYRCC 1 cut(s) 1655
BsrDI GCAATG 1 cut(s) 641
BsrGI TGTACA 1 cut(s) 1699
BsrI ACTGG 1 cut(s) 75
BssECI CCNNGG 2 cut(s) 508, 1659
BssMI GATC 6 cut(s) 133, 177, 187, 775, 1345, 1683
BssNAI GTATAC 1 cut(s) 154
BssNI GRCGYC 1 cut(s) 1198
BssT1I CCWWGG 1 cut(s) 508
Bst1107I GTATAC 1 cut(s) 154
Bst4CI ACNGT 4 cut(s) 437, 695, 1087, 1460
BstACI GRCGYC 1 cut(s) 1198
BstAUI TGTACA 1 cut(s) 1699
BstBAI YACGTR 1 cut(s) 1144
BstC8I GCNNGC 3 cut(s) 22, 560, 1486
BstF5I GGATG 3 cut(s) 246, 985, 1024
BstKTI GATC 6 cut(s) 136, 180, 190, 778, 1348, 1686
BstMAI GTCTC 3 cut(s) 409, 1368, 1638
BstMBI GATC 6 cut(s) 133, 177, 187, 775, 1345, 1683
BstMWI GCNNNNNNNGC 4 cut(s) 21, 30, 1562, 1619
BstNSI RCATGY 2 cut(s) 562, 590
BstSCI CCNGG 1 cut(s) 1659
BstSLI GKGCMC 1 cut(s) 1660
BstV1I GCAGC 5 cut(s) 25, 86, 456, 1607, 1610
BstX2I RGATCY 3 cut(s) 187, 775, 1683
BstXI CCANNNNNNTGG 1 cut(s) 96
BstYI RGATCY 3 cut(s) 187, 775, 1683
BstZ17I GTATAC 1 cut(s) 154
BsuI GTATCC 2 cut(s) 334, 799
BsuRI GGCC 2 cut(s) 1190, 1360
BtsCI GGATG 3 cut(s) 246, 985, 1024
BtsI GCAGTG 2 cut(s) 31, 360
BtsIMutI CAGTG 5 cut(s) 31, 360, 934, 1083, 1260
Cac8I GCNNGC 3 cut(s) 22, 560, 1486
CaiI CAGNNNCTG 1 cut(s) 1259
CciI TCATGA 2 cut(s) 103, 142
CseI GACGC 1 cut(s) 1187
Csp6I GTAC 4 cut(s) 493, 972, 1210, 1700
CviAII CATG 9 cut(s) 104, 143, 392, 545, 559, 587, 626, 1245, 1343
CviQI GTAC 4 cut(s) 493, 972, 1210, 1700
DpnI GATC 6 cut(s) 135, 179, 189, 777, 1347, 1685
DpnII GATC 6 cut(s) 133, 177, 187, 775, 1345, 1683
EaeI YGGCCR 1 cut(s) 1358
Eco130I CCWWGG 1 cut(s) 508
Eco32I GATATC 1 cut(s) 1251
Eco57I CTGAAG 4 cut(s) 98, 358, 817, 1076
EcoRV GATATC 1 cut(s) 1251
EcoT14I CCWWGG 1 cut(s) 508
EcoT22I ATGCAT 4 cut(s) 550, 631, 1246, 1631
ErhI CCWWGG 1 cut(s) 508
Esp3I CGTCTC 2 cut(s) 1368, 1638
FaeI CATG 9 cut(s) 107, 146, 395, 548, 562, 590, 629, 1248, 1346
FalI AAGNNNNNCTT 4 cut(s) 815, 847, 1218, 1250
FaqI GGGAC 1 cut(s) 279
FatI CATG 9 cut(s) 103, 142, 391, 544, 558, 586, 625, 1244, 1342
FblI GTMKAC 2 cut(s) 5, 153
Fnu4HI GCNGC 5 cut(s) 39, 75, 445, 1596, 1599
FokI GGATG 3 cut(s) 233, 992, 1031
Fsp4HI GCNGC 5 cut(s) 39, 75, 445, 1596, 1599
FspBI CTAG 9 cut(s) 56, 665, 672, 740, 986, 1274, 1412, 1557, 1688
GluI GCNGC 5 cut(s) 39, 75, 445, 1596, 1599
GsuI CTGGAG 1 cut(s) 1281
HaeIII GGCC 2 cut(s) 1190, 1360
HapII CCGG 2 cut(s) 1661, 1681
HgaI GACGC 1 cut(s) 1187
Hin1I GRCGYC 1 cut(s) 1198
Hin1II CATG 9 cut(s) 107, 146, 395, 548, 562, 590, 629, 1248, 1346
HindIII AAGCTT 2 cut(s) 498, 1152
HinfI GANTC 9 cut(s) 100, 212, 273, 316, 378, 622, 1297, 1336, 1478
HpaII CCGG 2 cut(s) 1661, 1681
HphI GGTGA 3 cut(s) 544, 1331, 1433
Hpy166II GTNNAC 3 cut(s) 6, 154, 1212
Hpy188I TCNGA 4 cut(s) 377, 1045, 1312, 1471
Hpy188III TCNNGA 4 cut(s) 104, 143, 320, 1260
Hpy8I GTNNAC 3 cut(s) 6, 154, 1212
HpyAV CCTTC 5 cut(s) 512, 796, 841, 1108, 1145
HpyCH4III ACNGT 4 cut(s) 437, 695, 1087, 1460
HpyCH4IV ACGT 2 cut(s) 1143, 1453
HpyF10VI GCNNNNNNNGC 4 cut(s) 21, 30, 1562, 1619
HpySE526I ACGT 2 cut(s) 1143, 1453
Hsp92I GRCGYC 1 cut(s) 1198
Hsp92II CATG 9 cut(s) 107, 146, 395, 548, 562, 590, 629, 1248, 1346
Kzo9I GATC 6 cut(s) 133, 177, 187, 775, 1345, 1683
LmnI GCTCC 1 cut(s) 1117
LpnPI CCDG 9 cut(s) 48, 56, 568, 701, 1064, 1245, 1456, 1674, 1694
Lsp1109I GCAGC 5 cut(s) 25, 86, 456, 1607, 1610
LweI GCATC 4 cut(s) 196, 627, 697, 1455
MaeI CTAG 9 cut(s) 56, 665, 672, 740, 986, 1274, 1412, 1557, 1688
MaeII ACGT 2 cut(s) 1143, 1453
MaeIII GTNAC 6 cut(s) 120, 437, 589, 1199, 1393, 1454
MalI GATC 6 cut(s) 135, 179, 189, 777, 1347, 1685
MboI GATC 6 cut(s) 133, 177, 187, 775, 1345, 1683
MboII GAAGA 7 cut(s) 104, 158, 325, 1238, 1534, 1537, 1560
MfeI CAATTG 1 cut(s) 945
MflI RGATCY 3 cut(s) 187, 775, 1683
MhlI GDGCHC 2 cut(s) 934, 1660
MluCI AATT 9 cut(s) 79, 233, 423, 728, 945, 1035, 1501, 1586, 1617
MlyI GAGTC 3 cut(s) 221, 372, 631
MmeI TCCRAC 2 cut(s) 274, 1499
Mph1103I ATGCAT 4 cut(s) 550, 631, 1246, 1631
MseI TTAA 5 cut(s) 63, 780, 1181, 1323, 1711
MslI CAYNNNNRTG 2 cut(s) 557, 1324
MspA1I CMGCKG 1 cut(s) 1054
MspI CCGG 2 cut(s) 1661, 1681
MspR9I CCNGG 1 cut(s) 1661
MunI CAATTG 1 cut(s) 945
Mva1269I GAATGC 4 cut(s) 486, 548, 660, 1030
MwoI GCNNNNNNNGC 4 cut(s) 21, 30, 1562, 1619
NciI CCSGG 1 cut(s) 1661
NdeII GATC 6 cut(s) 133, 177, 187, 775, 1345, 1683
NlaIII CATG 9 cut(s) 107, 146, 395, 548, 562, 590, 629, 1248, 1346
NlaIV GGNNCC 2 cut(s) 1657, 1685
NmuCI GTSAC 3 cut(s) 437, 1199, 1454
NsiI ATGCAT 4 cut(s) 550, 631, 1246, 1631
NspI RCATGY 2 cut(s) 562, 590
PaeI GCATGC 1 cut(s) 562
PagI TCATGA 2 cut(s) 103, 142
PctI GAATGC 4 cut(s) 486, 548, 660, 1030
PfeI GAWTC 6 cut(s) 100, 273, 316, 1297, 1336, 1478
PflMI CCANNNNNTGG 1 cut(s) 1245
PkrI GCNGC 5 cut(s) 40, 76, 446, 1597, 1600
PleI GAGTC 3 cut(s) 220, 372, 630
PpsI GAGTC 3 cut(s) 220, 372, 630
Ppu21I YACGTR 1 cut(s) 1144
PspN4I GGNNCC 2 cut(s) 1657, 1685
PstNI CAGNNNCTG 1 cut(s) 1259
PsuI RGATCY 3 cut(s) 187, 775, 1683
PvuII CAGCTG 1 cut(s) 1054
RsaI GTAC 4 cut(s) 494, 973, 1211, 1701
RsaNI GTAC 4 cut(s) 493, 972, 1210, 1700
RseI CAYNNNNRTG 2 cut(s) 557, 1324
SaqAI TTAA 5 cut(s) 63, 780, 1181, 1323, 1711
SatI GCNGC 5 cut(s) 39, 75, 445, 1596, 1599
Sau3AI GATC 6 cut(s) 133, 177, 187, 775, 1345, 1683
SchI GAGTC 3 cut(s) 221, 372, 631
ScrFI CCNGG 1 cut(s) 1661
SduI GDGCHC 2 cut(s) 934, 1660
SfaNI GCATC 4 cut(s) 196, 627, 697, 1455
SmiMI CAYNNNNRTG 2 cut(s) 557, 1324
SmlI CTYRAG 1 cut(s) 594
SmoI CTYRAG 1 cut(s) 594
SphI GCATGC 1 cut(s) 562
Sse9I AATT 9 cut(s) 79, 233, 423, 728, 945, 1035, 1501, 1586, 1617
SspMI CTAG 9 cut(s) 56, 665, 672, 740, 986, 1274, 1412, 1557, 1688
StyD4I CCNGG 1 cut(s) 1659
StyI CCWWGG 1 cut(s) 508
TaaI ACNGT 4 cut(s) 437, 695, 1087, 1460
TaiI ACGT 2 cut(s) 1146, 1456
TaqI TCGA 3 cut(s) 180, 276, 1615
TasI AATT 9 cut(s) 79, 233, 423, 728, 945, 1035, 1501, 1586, 1617
TatI WGTACW 2 cut(s) 1209, 1699
TfiI GAWTC 6 cut(s) 100, 273, 316, 1297, 1336, 1478
Tru1I TTAA 5 cut(s) 63, 780, 1181, 1323, 1711
Tru9I TTAA 5 cut(s) 63, 780, 1181, 1323, 1711
TscAI CASTG 5 cut(s) 31, 367, 934, 1090, 1260
TseFI GTSAC 3 cut(s) 437, 1199, 1454
TseI GCWGC 5 cut(s) 38, 74, 444, 1595, 1598
Tsp45I GTSAC 3 cut(s) 437, 1199, 1454
TspDTI ATGAA 7 cut(s) 159, 492, 996, 1107, 1119, 1329, 1544
TspRI CASTG 5 cut(s) 31, 367, 934, 1090, 1260
Van91I CCANNNNNTGG 1 cut(s) 1245
XapI RAATTY 4 cut(s) 423, 728, 1035, 1586
XceI RCATGY 2 cut(s) 562, 590
XmiI GTMKAC 2 cut(s) 5, 153
XspI CTAG 9 cut(s) 56, 665, 672, 740, 986, 1274, 1412, 1557, 1688
Zsp2I ATGCAT 4 cut(s) 550, 631, 1246, 1631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.