Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000768

Physical Location & Seq

Genomic Coordinates Reverse (-)

72436329 .. 72437725

Gene Structure 1397 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G045470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGCCATTGCACCACAGAATGCAAATATTAGAAGCTAGATGGTATATTGAGGCATACAGTAAAAAGGCATATGCAAGTCAGGTGCTACTTGAATTTGCCAAGCTAGATTACAATGTGGTGCAACAAACATACCAAAGAGATTTTAAAGATATTTCAAGGTGGTGGAAGGATACGGGGTTAGCAAAGAAGTTGTCCTTCAGCAGAGACAGACTGATGGAGTGGTTCTTTTGGTCAGTTGGTATAGTGTCTGAACCTCAATTCAGCGATATTAAGAAAGGGATAACTAAAGTCGGTGCTCTAATAACGACTATTGATGATGTCTGTGATGTTTATGGTACTTTGGATGAACTAGAGCTATTCACATATGTTGTTGAAAGATGGGATGTGAATGCTGTGGAAATTCTTTCAGACTACCAGCTGAAGCTTTGTTTCCTTGCTCTCTATAACACTGTGAATGAAATGACTTATGAAACTTTGAAGGAGCAAGGAGTGAACGTTCTTCCTTACTTGACAAAAGTTTGGGCTGATATGTGCAAATCTTGGTTAACGGAGGCAGAATGGCGTCACAACAATTGCACACCTACATTTGACGAATATCTTGCCAATGCATGGATATCAGTGTCCGGGGTAGTCATTCTGGTCCATACCTACTTTCTACTCAATCAAAATATCTCAAATGAAGCACTTAAATGCTTAGAGAATCACCATGATCTCTTGCGTTGGCCGTCTGTTATTTTTCGACTCTTAAATGATTTGGCTACTTCGAAGGTCTGTCTTCAATTAATTGCTCTTCATTTCCATCTTTGTTATCTATTCTCTAGCTTTTACCATATTGGTAATGCGCTATGCTGTAGGCAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00900 ko01110 map00900 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

287

Amino Acids

33.75

Weight (kDa)

5.85

Isoelectric Point (pI)

33.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth_C	PF03936	56 - 256	2.6e-74	Terpene synthase family, metal binding domain
Terpene_syn_C_2	PF19086	96 - 256	1.2e-44	Terpene synthase family 2, C-terminal metal binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24210 AT3G25810 AT3G25820 AT3G25820 AT3G25820 AT3G25820 AT3G25830 AT4G16730 AT4G16730 AT4G16740 AT4G16740 AT4G16740 AT4G16740
fragaria_vesca	FvH4_6g43791 FvH4_6g43792 FvH4_6g43792 FvH4_6g43793 FvH4_6g43794 FvH4_6g43820 FvH4_6g44544 FvH4_6g45600
malus_domestica	MD08G1157700.v1.1 MD17G1090000.v1.1 MD17G1090100.v1.1 MD17G1090400.v1.1
pyrus_communis	pycom17g08710 pycom17g08720
rosa_chinensis	RchiOBHm_Chr2g0160561 RchiOBHm_Chr2g0160591 RchiOBHm_Chr3g0484891 RchiOBHm_Chr6g0252721
rosa_laevigata	RLG00000015069 RLG00000021224 RLG00000023189 RLG00000023190 RLG00000023196 RLG00000023197
rosa_multiflora	Rmu_co8462617.1_g000001 Rmu_sc0000674.1_g000010 Rmu_sc0001689.1_g000022 Rmu_sc0003707.1_g000003 Rmu_sc0005946.1_g000007 Rmu_sc0006653.1_g000017 Rmu_sc0012232.1_g000001
rosa_roxburghii	Rroxscaffold_6G00397380
rosa_rugosa	Rorug02G0483700 Rorug02G0483800 Rorug02G0483900 Rorug02G0484000 Rorug02G0484000 Rorug03G0214100
rosa_samantha	Rh2AG549100 Rh2BG562800 Rh2BG563300 Rh2CG533400 Rh2DG572200 Rh2DG572300 Rh3AG264500 Rh3BG300000 Rh3CG297600 Rh3DG293400 Rh3DG293600 Rh6AG054500 Rh6BG048300 Rh6DG042600
rosa_wichuraiana	Rw2G045460 Rw2G045470 Rw3G023600 Rw3G023610 Rw6G004920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	609
AclI	AACGTT	1 cut(s)	495
AcoI	YGGCCR	1 cut(s)	722
AcsI	RAATTY	2 cut(s)	92, 399
AcuI	CTGAAG	2 cut(s)	181, 440
AcyI	GRCGYC	1 cut(s)	562
AfaI	GTAC	1 cut(s)	337
AfiI	CCNNNNNNNGG	1 cut(s)	609
AgsI	TTSAA	5 cut(s)	92, 156, 374, 478, 779
AloI	GAACNNNNNNTCC	2 cut(s)	480, 512
AluBI	AGCT	6 cut(s)	35, 103, 355, 418, 424, 822
AluI	AGCT	6 cut(s)	35, 103, 355, 418, 424, 822
Alw21I	GWGCWC	1 cut(s)	298
Alw26I	GTCTC	1 cut(s)	198
AoxI	GGCC	1 cut(s)	722
ApoI	RAATTY	2 cut(s)	92, 399
ArsI	GACNNNNNNTTYG	2 cut(s)	176, 208
AseI	ATTAAT	1 cut(s)	782
AspLEI	GCGC	1 cut(s)	844
AspS9I	GGNCC	1 cut(s)	640
AsuC2I	CCSGG	1 cut(s)	625
AsuHPI	GGTGA	1 cut(s)	695
AsuII	TTCGAA	1 cut(s)	764
AvaII	GGWCC	1 cut(s)	640
BbsI	GAAGAC	1 cut(s)	767
Bbv12I	GWGCWC	1 cut(s)	298
BccI	CCATC	4 cut(s)	33, 208, 372, 807
BceAI	ACGGC	1 cut(s)	709
BcgI	CGANNNNNNTGC	2 cut(s)	581, 615
BciVI	GTATCC	1 cut(s)	163
BcnI	CCSGG	1 cut(s)	625
BcoDI	GTCTC	1 cut(s)	198
BfaI	CTAG	5 cut(s)	36, 104, 350, 819, 862
BfmI	CTRYAG	1 cut(s)	850
BfuI	GTATCC	1 cut(s)	163
Bme1390I	CCNGG	1 cut(s)	625
Bme18I	GGWCC	1 cut(s)	640
BmgT120I	GGNCC	1 cut(s)	640
BmrFI	CCNGG	1 cut(s)	625
BpiI	GAAGAC	1 cut(s)	767
Bpu14I	TTCGAA	1 cut(s)	764
BpuMI	CCSGG	1 cut(s)	625
BsaHI	GRCGYC	1 cut(s)	562
BsaJI	CCNNGG	1 cut(s)	624
BsaXI	ACNNNNNCTCC	2 cut(s)	480, 510
Bsc4I	CCNNNNNNNGG	1 cut(s)	609
Bse3DI	GCAATG	1 cut(s)	5
BseDI	CCNNGG	1 cut(s)	624
BseGI	GGATG	2 cut(s)	349, 388
BseLI	CCNNNNNNNGG	1 cut(s)	609
BseMI	GCAATG	1 cut(s)	5
BshFI	GGCC	1 cut(s)	724
BsiHKAI	GWGCWC	1 cut(s)	298
BsiSI	CCGG	1 cut(s)	624
BslI	CCNNNNNNNGG	1 cut(s)	609
BsmAI	GTCTC	1 cut(s)	198
BsmI	GAATGC	2 cut(s)	24, 394
BsnI	GGCC	1 cut(s)	724
Bsp119I	TTCGAA	1 cut(s)	764
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp143I	GATC	1 cut(s)	709
BspANI	GGCC	1 cut(s)	724
BspQI	GCTCTTC	1 cut(s)	795
BspT104I	TTCGAA	1 cut(s)	764
BsrDI	GCAATG	1 cut(s)	5
BssECI	CCNNGG	1 cut(s)	624
BssMI	GATC	1 cut(s)	709
BssNI	GRCGYC	1 cut(s)	562
Bst4CI	ACNGT	2 cut(s)	59, 451
Bst6I	CTCTTC	1 cut(s)	795
BstACI	GRCGYC	1 cut(s)	562
BstBI	TTCGAA	1 cut(s)	764
BstDEI	CTNAG	1 cut(s)	694
BstF5I	GGATG	2 cut(s)	349, 388
BstHHI	GCGC	1 cut(s)	844
BstKTI	GATC	1 cut(s)	712
BstMAI	GTCTC	1 cut(s)	198
BstMBI	GATC	1 cut(s)	709
BstSCI	CCNGG	1 cut(s)	623
BstSFI	CTRYAG	1 cut(s)	850
BstV2I	GAAGAC	1 cut(s)	767
BsuI	GTATCC	1 cut(s)	163
BsuRI	GGCC	1 cut(s)	724
BtsCI	GGATG	2 cut(s)	349, 388
BtsIMutI	CAGTG	2 cut(s)	447, 624
CfoI	GCGC	1 cut(s)	844
Cfr13I	GGNCC	1 cut(s)	640
CseI	GACGC	1 cut(s)	551
Csp6I	GTAC	1 cut(s)	336
CviAII	CATG	2 cut(s)	609, 707
CviJI	RGCY	9 cut(s)	35, 103, 355, 418, 424, 524, 724, 758, 822
CviKI_1	RGCY	9 cut(s)	35, 103, 355, 418, 424, 524, 724, 758, 822
CviQI	GTAC	1 cut(s)	336
DdeI	CTNAG	1 cut(s)	694
DpnI	GATC	1 cut(s)	711
DpnII	GATC	1 cut(s)	709
DraI	TTTAAA	1 cut(s)	145
EaeI	YGGCCR	1 cut(s)	722
Eam1104I	CTCTTC	1 cut(s)	795
EarI	CTCTTC	1 cut(s)	795
Eco32I	GATATC	1 cut(s)	615
Eco47I	GGWCC	1 cut(s)	640
Eco57I	CTGAAG	2 cut(s)	181, 440
EcoRV	GATATC	1 cut(s)	615
EcoT22I	ATGCAT	1 cut(s)	610
FaeI	CATG	2 cut(s)	612, 710
FalI	AAGNNNNNCTT	2 cut(s)	179, 211
FatI	CATG	2 cut(s)	608, 706
FauNDI	CATATG	2 cut(s)	70, 364
FokI	GGATG	2 cut(s)	356, 395
FspBI	CTAG	5 cut(s)	36, 104, 350, 819, 862
GlaI	GCGC	1 cut(s)	843
HaeIII	GGCC	1 cut(s)	724
HapII	CCGG	1 cut(s)	624
HgaI	GACGC	1 cut(s)	551
HhaI	GCGC	1 cut(s)	844
Hin1I	GRCGYC	1 cut(s)	562
Hin1II	CATG	2 cut(s)	612, 710
Hin6I	GCGC	1 cut(s)	842
HinP1I	GCGC	1 cut(s)	842
HincII	GTYRAC	1 cut(s)	546
HindII	GTYRAC	1 cut(s)	546
HindIII	AAGCTT	1 cut(s)	422
HinfI	GANTC	2 cut(s)	700, 741
HpaI	GTTAAC	1 cut(s)	546
HpaII	CCGG	1 cut(s)	624
HphI	GGTGA	1 cut(s)	695
Hpy166II	GTNNAC	2 cut(s)	493, 546
Hpy188I	TCNGA	2 cut(s)	250, 409
Hpy8I	GTNNAC	2 cut(s)	493, 546
HpyAV	CCTTC	4 cut(s)	160, 205, 472, 760
HpyCH4III	ACNGT	2 cut(s)	59, 451
HpyCH4IV	ACGT	1 cut(s)	495
HpyCH4V	TGCA	7 cut(s)	10, 22, 74, 121, 534, 576, 608
HpyF3I	CTNAG	1 cut(s)	694
HpySE526I	ACGT	1 cut(s)	495
Hsp92I	GRCGYC	1 cut(s)	562
Hsp92II	CATG	2 cut(s)	612, 710
HspAI	GCGC	1 cut(s)	842
KspAI	GTTAAC	1 cut(s)	546
Kzo9I	GATC	1 cut(s)	709
LguI	GCTCTTC	1 cut(s)	795
LmnI	GCTCC	1 cut(s)	481
LpnPI	CCDG	4 cut(s)	65, 428, 623, 637
MaeI	CTAG	5 cut(s)	36, 104, 350, 819, 862
MaeII	ACGT	1 cut(s)	495
MaeIII	GTNAC	1 cut(s)	563
MalI	GATC	1 cut(s)	711
MboI	GATC	1 cut(s)	709
MboII	GAAGA	3 cut(s)	491, 767, 782
MfeI	CAATTG	1 cut(s)	571
MhlI	GDGCHC	1 cut(s)	298
MluCI	AATT	6 cut(s)	92, 257, 399, 571, 779, 783
MlyI	GAGTC	1 cut(s)	735
MnlI	CCTC	3 cut(s)	43, 264, 544
Mph1103I	ATGCAT	1 cut(s)	610
MseI	TTAA	6 cut(s)	144, 270, 545, 687, 746, 782
MslI	CAYNNNNRTG	1 cut(s)	688
MspA1I	CMGCKG	1 cut(s)	418
MspI	CCGG	1 cut(s)	624
MspR9I	CCNGG	1 cut(s)	625
MunI	CAATTG	1 cut(s)	571
Mva1269I	GAATGC	2 cut(s)	24, 394
NciI	CCSGG	1 cut(s)	625
NdeI	CATATG	2 cut(s)	70, 364
NdeII	GATC	1 cut(s)	709
NlaIII	CATG	2 cut(s)	612, 710
NmuCI	GTSAC	1 cut(s)	563
NsiI	ATGCAT	1 cut(s)	610
NspV	TTCGAA	1 cut(s)	764
PciSI	GCTCTTC	1 cut(s)	795
PctI	GAATGC	2 cut(s)	24, 394
PfeI	GAWTC	1 cut(s)	700
PflMI	CCANNNNNTGG	1 cut(s)	609
PleI	GAGTC	1 cut(s)	735
PpsI	GAGTC	1 cut(s)	735
PshBI	ATTAAT	1 cut(s)	782
Psp1406I	AACGTT	1 cut(s)	495
PspPI	GGNCC	1 cut(s)	640
PvuII	CAGCTG	1 cut(s)	418
RsaI	GTAC	1 cut(s)	337
RsaNI	GTAC	1 cut(s)	336
RseI	CAYNNNNRTG	1 cut(s)	688
SapI	GCTCTTC	1 cut(s)	795
SaqAI	TTAA	6 cut(s)	144, 270, 545, 687, 746, 782
Sau3AI	GATC	1 cut(s)	709
Sau96I	GGNCC	1 cut(s)	640
SchI	GAGTC	1 cut(s)	735
ScrFI	CCNGG	1 cut(s)	625
SduI	GDGCHC	1 cut(s)	298
SfcI	CTRYAG	1 cut(s)	850
SfuI	TTCGAA	1 cut(s)	764
SinI	GGWCC	1 cut(s)	640
SmiMI	CAYNNNNRTG	1 cut(s)	688
Sse9I	AATT	6 cut(s)	92, 257, 399, 571, 779, 783
SspI	AATATT	1 cut(s)	27
SspMI	CTAG	5 cut(s)	36, 104, 350, 819, 862
StyD4I	CCNGG	1 cut(s)	623
TaaI	ACNGT	2 cut(s)	59, 451
TaiI	ACGT	1 cut(s)	498
TaqI	TCGA	2 cut(s)	739, 764
TasI	AATT	6 cut(s)	92, 257, 399, 571, 779, 783
TfiI	GAWTC	1 cut(s)	700
Tru1I	TTAA	6 cut(s)	144, 270, 545, 687, 746, 782
Tru9I	TTAA	6 cut(s)	144, 270, 545, 687, 746, 782
TscAI	CASTG	2 cut(s)	454, 624
TseFI	GTSAC	1 cut(s)	563
Tsp45I	GTSAC	1 cut(s)	563
TspDTI	ATGAA	5 cut(s)	360, 471, 483, 693, 782
TspGWI	ACGGA	1 cut(s)	563
TspRI	CASTG	2 cut(s)	454, 624
Van91I	CCANNNNNTGG	1 cut(s)	609
VpaK11BI	GGWCC	1 cut(s)	640
VspI	ATTAAT	1 cut(s)	782
XapI	RAATTY	2 cut(s)	92, 399
XspI	CTAG	5 cut(s)	36, 104, 350, 819, 862
Zsp2I	ATGCAT	1 cut(s)	610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.