RchiOBHm_Chr3g0484891

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000768
Physical Location & Seq
Reverse (-)
31382646 .. 31386053
3408 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44957

Sequence Viewer

Length: 1701 bp
ATGTCTACCCAATGCTTAGCGAGCAGTGGTAGCCCTGCTGCTCAAACTTCACATCTGGATGTTAAAAGACTGACAGCAAATTACAAGCCAAGTATTTGGAGTCACGATTTTCTTCAGTCGTTACATATTGATGATCGCAATCATGAAGAAGTATACAAAGATAATAGGTGGAAGTTGATCGAGGAGGATCTGAAAAATGTGATTGATGCAGAGTCACTAGAGACTACACTTGAATTGATTGATGACATCCAACGATTAGGTTTGGGACACCGATTCGAGGCCAGTATAACAGAAGCCCTTGATAAAGTTTTGAAGAATCTTGACCAAATAACAAACGAGGATACTCCAAGTCTGCACCTCACTGCTCTCAGCTTCAGACTCCTTAGACAACATGGGTTTCAAGTTTCCCAAGATGTTTTCAAAATTTTCATGGACTGCGACGACAGCTTCAAGGATTGCCTTTGCAAAGATGTCAAAGGAATGTTGAGTCTATACGAAGCTTCATTCCTTGGTATTGAAGGAGAAACACTCTTGGATGAGGCCCTTGCATTCACTAGCATGCACCTAAAGAACCTCAGCAGATTGCAAGTTACTCAAGGCAAAGGTGTATTAGAGCAAGTGAGTCATGCATTGGAGATGCCATTGCACCATAGAATGCAAAGTCTAGAAGCTAGATGGTATATTGAGGCATACAGTAAAAAGGCAGATGCAAATCAAGTGCTACTTGAATTTGCCAAGCTAGATTACAATGTGGTGCAACAAACATACCAAAGAGATCTTAAAGACATTTCAAGGTGGTGGAAGGATACCGGGTTAGCAAAGAAGTTATCCTTCAGCAGAGATAGACTGATGGAATTGTTCTTTTGGTCAGTTGGTATAGTGTTTGAACCTCAACTCAGCAATGTTAGAAAAGGGATAACTAAAGTCAGTGCTCTAATAACGACAATTGATGATGTTTATGATGTTTATGGTACTTTGGATGAACTAGAGCTATTCACAAATGTTGTTGAAAGATGGGATGTGAATGCTGTGGAGATTCTTTCAGACTACCAACTTAAGCTCTGTTTCCTTGCTCTCTATAACACTGTGAATGAAATGACTTATGAAACTTTGAAGGAACAAGGAGTGAACGTCCTTCCTTACGTGAGAAAAGCTTGGGCAGATATGTGCAAAACTTGGTTAACGGAGGCAAAGTGGCGTCACAACAAGTACACACCTACATTTGAAGAATATCTTGCCAATGCATGGATATCAGTTTCTGGGGTGGTCATTCTAGTCCATACCTACTTTCTACTGAATCAAAATATCTCAGATGAAGCACTTAAATGCTTAGAGAATCACCATGATCTCTTGCGTTGGCCGTCTCTTATTTTTCGGCTCTCAAATGATTTGGTTACTTCGAAGGCAGAACTAGAGAGAGGTGAAACTGCAACTTCAATATCCTGCATCAGACGTGATGGTGTTGTTTCTAATGAGGAATCTGCTCGCAAATATATTAGTAATTTGATTGAGAATAGTTGGAAGAAGATGAACAAAGATGGACTACTATTTGGTGCTTCTCCATTCACAAAGGAATTTGTAGCAGCAACAATGAACCTTGCTCGAATTGCCCAATGCATTTACCAATATGGAGATGGGATTGGTGCCCCGGATAAAAGAGTAAAGAACCAGATCCTAGCAGTGATTGTACAACCTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

566

Amino Acids

64.98

Weight (kDa)

5.49

Isoelectric Point (pI)

35.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 32 - 211 1.1e-49 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 268 - 509 1.1e-87 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 308 - 509 1.7e-57 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1643
AccB7I CCANNNNNTGG 1 cut(s) 1245
AccI GTMKAC 2 cut(s) 5, 153
AclWI GGATC 2 cut(s) 195, 1666
AcoI YGGCCR 1 cut(s) 1358
AcsI RAATTY 3 cut(s) 423, 728, 1574
AcuI CTGAAG 3 cut(s) 98, 358, 817
AcyI GRCGYC 1 cut(s) 1198
AfaI GTAC 3 cut(s) 973, 1211, 1689
AfiI CCNNNNNNNGG 2 cut(s) 277, 1245
AflII CTTAAG 1 cut(s) 1055
AjiI CACGTC 1 cut(s) 1454
AluBI AGCT 8 cut(s) 372, 447, 500, 671, 739, 991, 1060, 1154
AluI AGCT 8 cut(s) 372, 447, 500, 671, 739, 991, 1060, 1154
Alw21I GWGCWC 1 cut(s) 934
Alw26I GTCTC 2 cut(s) 215, 1368
AlwI GGATC 2 cut(s) 195, 1666
AlwNI CAGNNNCTG 1 cut(s) 1259
AoxI GGCC 3 cut(s) 279, 540, 1358
ApeKI GCWGC 2 cut(s) 38, 1583
ApoI RAATTY 3 cut(s) 423, 728, 1574
AspS9I GGNCC 1 cut(s) 541
AsuC2I CCSGG 2 cut(s) 811, 1649
AsuHPI GGTGA 2 cut(s) 1331, 1433
AsuII TTCGAA 1 cut(s) 1400
BaeGI GKGCMC 1 cut(s) 1648
BanI GGYRCC 1 cut(s) 1643
Bbv12I GWGCWC 1 cut(s) 934
BbvCI CCTCAGC 1 cut(s) 575
BbvI GCAGC 2 cut(s) 25, 1595
BccI CCATC 6 cut(s) 669, 844, 1008, 1451, 1532, 1628
BceAI ACGGC 1 cut(s) 1345
BciVI GTATCC 2 cut(s) 334, 799
BcnI CCSGG 2 cut(s) 811, 1649
BcoDI GTCTC 2 cut(s) 215, 1368
BfaI CTAG 9 cut(s) 218, 555, 665, 672, 740, 986, 1274, 1412, 1676
BfrI CTTAAG 1 cut(s) 1055
BfuI GTATCC 2 cut(s) 334, 799
BglII AGATCT 1 cut(s) 775
BisI GCNGC 2 cut(s) 39, 1584
BlpI GCTNAGC 1 cut(s) 16
BlsI GCNGC 2 cut(s) 40, 1585
Bme1390I CCNGG 2 cut(s) 811, 1649
BmgBI CACGTC 1 cut(s) 1454
BmgT120I GGNCC 1 cut(s) 541
BmiI GGNNCC 1 cut(s) 1645
BmrFI CCNGG 2 cut(s) 811, 1649
BmsI GCATC 4 cut(s) 196, 627, 697, 1455
BplI GAGNNNNNCTC 2 cut(s) 513, 545
Bpu10I CCTNAGC 1 cut(s) 575
Bpu1102I GCTNAGC 1 cut(s) 16
Bpu14I TTCGAA 1 cut(s) 1400
BpuEI CTTGAG 1 cut(s) 579
BpuMI CCSGG 2 cut(s) 811, 1649
BsaAI YACGTR 1 cut(s) 1144
BsaBI GATNNNNATC 2 cut(s) 138, 711
BsaHI GRCGYC 1 cut(s) 1198
BsaJI CCNNGG 2 cut(s) 508, 1647
BsaXI ACNNNNNCTCC 4 cut(s) 1116, 1146, 1178, 1208
Bsc4I CCNNNNNNNGG 2 cut(s) 277, 1245
Bse1I ACTGG 1 cut(s) 282
Bse3DI GCAATG 2 cut(s) 641, 907
Bse8I GATNNNNATC 2 cut(s) 138, 711
BseDI CCNNGG 2 cut(s) 508, 1647
BseGI GGATG 5 cut(s) 64, 246, 541, 985, 1024
BseJI GATNNNNATC 2 cut(s) 138, 711
BseLI CCNNNNNNNGG 2 cut(s) 277, 1245
BseMI GCAATG 2 cut(s) 641, 907
BseMII CTCAG 4 cut(s) 382, 589, 910, 1323
BseNI ACTGG 1 cut(s) 282
BseRI GAGGAG 1 cut(s) 197
BseSI GKGCMC 1 cut(s) 1648
BseXI GCAGC 2 cut(s) 25, 1595
BsgI GTGCAG 1 cut(s) 338
BshFI GGCC 3 cut(s) 281, 542, 1360
BshNI GGYRCC 1 cut(s) 1643
BsiHKAI GWGCWC 1 cut(s) 934
BsiSI CCGG 2 cut(s) 810, 1649
BslFI GGGAC 1 cut(s) 279
BslI CCNNNNNNNGG 2 cut(s) 277, 1245
BsmAI GTCTC 2 cut(s) 215, 1368
BsmBI CGTCTC 1 cut(s) 1368
BsmFI GGGAC 1 cut(s) 279
BsmI GAATGC 3 cut(s) 548, 660, 1030
BsnI GGCC 3 cut(s) 281, 542, 1360
Bsp119I TTCGAA 1 cut(s) 1400
Bsp1286I GDGCHC 2 cut(s) 934, 1648
Bsp1407I TGTACA 1 cut(s) 1687
Bsp143I GATC 6 cut(s) 133, 177, 187, 775, 1345, 1671
Bsp1720I GCTNAGC 1 cut(s) 16
BspANI GGCC 3 cut(s) 281, 542, 1360
BspCNI CTCAG 4 cut(s) 381, 588, 909, 1322
BspHI TCATGA 1 cut(s) 142
BspLI GGNNCC 1 cut(s) 1645
BspPI GGATC 2 cut(s) 195, 1666
BspT104I TTCGAA 1 cut(s) 1400
BspT107I GGYRCC 1 cut(s) 1643
BspTI CTTAAG 1 cut(s) 1055
BsrDI GCAATG 2 cut(s) 641, 907
BsrGI TGTACA 1 cut(s) 1687
BsrI ACTGG 1 cut(s) 282
BssECI CCNNGG 2 cut(s) 508, 1647
BssMI GATC 6 cut(s) 133, 177, 187, 775, 1345, 1671
BssNAI GTATAC 1 cut(s) 154
BssNI GRCGYC 1 cut(s) 1198
BssT1I CCWWGG 1 cut(s) 508
Bst1107I GTATAC 1 cut(s) 154
Bst4CI ACNGT 2 cut(s) 695, 1087
BstACI GRCGYC 1 cut(s) 1198
BstAFI CTTAAG 1 cut(s) 1055
BstAUI TGTACA 1 cut(s) 1687
BstBAI YACGTR 1 cut(s) 1144
BstBI TTCGAA 1 cut(s) 1400
BstC8I GCNNGC 3 cut(s) 22, 560, 1486
BstDEI CTNAG 7 cut(s) 16, 368, 383, 575, 896, 1309, 1330
BstF5I GGATG 5 cut(s) 64, 246, 541, 985, 1024
BstKTI GATC 6 cut(s) 136, 180, 190, 778, 1348, 1674
BstMAI GTCTC 2 cut(s) 215, 1368
BstMBI GATC 6 cut(s) 133, 177, 187, 775, 1345, 1671
BstMWI GCNNNNNNNGC 4 cut(s) 21, 30, 444, 1607
BstNSI RCATGY 1 cut(s) 562
BstSCI CCNGG 2 cut(s) 809, 1647
BstSLI GKGCMC 1 cut(s) 1648
BstV1I GCAGC 2 cut(s) 25, 1595
BstX2I RGATCY 3 cut(s) 187, 775, 1671
BstXI CCANNNNNNTGG 1 cut(s) 96
BstYI RGATCY 3 cut(s) 187, 775, 1671
BstZ17I GTATAC 1 cut(s) 154
BsuI GTATCC 2 cut(s) 334, 799
BsuRI GGCC 3 cut(s) 281, 542, 1360
BtrI CACGTC 1 cut(s) 1454
BtsCI GGATG 5 cut(s) 64, 246, 541, 985, 1024
BtsI GCAGTG 3 cut(s) 31, 360, 1686
BtsIMutI CAGTG 5 cut(s) 31, 360, 934, 1083, 1686
Cac8I GCNNGC 3 cut(s) 22, 560, 1486
CaiI CAGNNNCTG 1 cut(s) 1259
CciI TCATGA 1 cut(s) 142
Cfr13I GGNCC 1 cut(s) 541
CseI GACGC 1 cut(s) 1187
Csp6I GTAC 3 cut(s) 972, 1210, 1688
CviAII CATG 7 cut(s) 143, 392, 430, 559, 626, 1245, 1343
CviQI GTAC 3 cut(s) 972, 1210, 1688
DdeI CTNAG 7 cut(s) 16, 368, 383, 575, 896, 1309, 1330
DpnI GATC 6 cut(s) 135, 179, 189, 777, 1347, 1673
DpnII GATC 6 cut(s) 133, 177, 187, 775, 1345, 1671
EaeI YGGCCR 1 cut(s) 1358
Eco130I CCWWGG 1 cut(s) 508
Eco32I GATATC 1 cut(s) 1251
Eco57I CTGAAG 3 cut(s) 98, 358, 817
EcoO109I RGGNCCY 1 cut(s) 541
EcoRV GATATC 1 cut(s) 1251
EcoT14I CCWWGG 1 cut(s) 508
EcoT22I ATGCAT 3 cut(s) 631, 1246, 1619
ErhI CCWWGG 1 cut(s) 508
Esp3I CGTCTC 1 cut(s) 1368
FaeI CATG 7 cut(s) 146, 395, 433, 562, 629, 1248, 1346
FalI AAGNNNNNCTT 6 cut(s) 708, 740, 815, 847, 1218, 1250
FaqI GGGAC 1 cut(s) 279
FatI CATG 7 cut(s) 142, 391, 429, 558, 625, 1244, 1342
FblI GTMKAC 2 cut(s) 5, 153
Fnu4HI GCNGC 2 cut(s) 39, 1584
FokI GGATG 5 cut(s) 71, 233, 548, 992, 1031
Fsp4HI GCNGC 2 cut(s) 39, 1584
FspBI CTAG 9 cut(s) 218, 555, 665, 672, 740, 986, 1274, 1412, 1676
GluI GCNGC 2 cut(s) 39, 1584
HaeIII GGCC 3 cut(s) 281, 542, 1360
HapII CCGG 2 cut(s) 810, 1649
HgaI GACGC 1 cut(s) 1187
Hin1I GRCGYC 1 cut(s) 1198
Hin1II CATG 7 cut(s) 146, 395, 433, 562, 629, 1248, 1346
HincII GTYRAC 1 cut(s) 1182
HindII GTYRAC 1 cut(s) 1182
HindIII AAGCTT 2 cut(s) 498, 1152
HpaI GTTAAC 1 cut(s) 1182
HpaII CCGG 2 cut(s) 810, 1649
HphI GGTGA 2 cut(s) 1331, 1433
Hpy166II GTNNAC 5 cut(s) 6, 154, 1129, 1182, 1212
Hpy188I TCNGA 5 cut(s) 192, 377, 1045, 1312, 1451
Hpy188III TCNNGA 5 cut(s) 56, 104, 143, 320, 665
Hpy8I GTNNAC 5 cut(s) 6, 154, 1129, 1182, 1212
Hpy99I CGWCG 1 cut(s) 443
HpyAV CCTTC 6 cut(s) 512, 796, 841, 1108, 1145, 1396
HpyCH4III ACNGT 2 cut(s) 695, 1087
HpyCH4IV ACGT 3 cut(s) 1131, 1143, 1453
HpyF10VI GCNNNNNNNGC 4 cut(s) 21, 30, 444, 1607
HpyF3I CTNAG 7 cut(s) 16, 368, 383, 575, 896, 1309, 1330
HpySE526I ACGT 3 cut(s) 1131, 1143, 1453
Hsp92I GRCGYC 1 cut(s) 1198
Hsp92II CATG 7 cut(s) 146, 395, 433, 562, 629, 1248, 1346
KspAI GTTAAC 1 cut(s) 1182
Kzo9I GATC 6 cut(s) 133, 177, 187, 775, 1345, 1671
LpnPI CCDG 8 cut(s) 41, 48, 295, 823, 1245, 1456, 1662, 1682
Lsp1109I GCAGC 2 cut(s) 25, 1595
LweI GCATC 4 cut(s) 196, 627, 697, 1455
MaeI CTAG 9 cut(s) 218, 555, 665, 672, 740, 986, 1274, 1412, 1676
MaeII ACGT 3 cut(s) 1131, 1143, 1453
MaeIII GTNAC 6 cut(s) 101, 120, 213, 589, 1199, 1393
MalI GATC 6 cut(s) 135, 179, 189, 777, 1347, 1673
MboI GATC 6 cut(s) 133, 177, 187, 775, 1345, 1671
MboII GAAGA 6 cut(s) 104, 158, 325, 1238, 1534, 1537
MfeI CAATTG 1 cut(s) 945
MflI RGATCY 3 cut(s) 187, 775, 1671
MhlI GDGCHC 2 cut(s) 934, 1648
MluCI AATT 9 cut(s) 79, 233, 423, 728, 854, 945, 1501, 1574, 1605
MlyI GAGTC 5 cut(s) 109, 221, 372, 496, 631
MmeI TCCRAC 2 cut(s) 274, 1499
Mph1103I ATGCAT 3 cut(s) 631, 1246, 1619
MseI TTAA 6 cut(s) 63, 780, 1056, 1181, 1323, 1699
MslI CAYNNNNRTG 4 cut(s) 57, 129, 557, 1324
MspCI CTTAAG 1 cut(s) 1055
MspI CCGG 2 cut(s) 810, 1649
MspR9I CCNGG 2 cut(s) 811, 1649
MunI CAATTG 1 cut(s) 945
Mva1269I GAATGC 3 cut(s) 548, 660, 1030
MwoI GCNNNNNNNGC 4 cut(s) 21, 30, 444, 1607
NciI CCSGG 2 cut(s) 811, 1649
NdeII GATC 6 cut(s) 133, 177, 187, 775, 1345, 1671
NlaIII CATG 7 cut(s) 146, 395, 433, 562, 629, 1248, 1346
NlaIV GGNNCC 1 cut(s) 1645
NmuCI GTSAC 3 cut(s) 101, 213, 1199
NsiI ATGCAT 3 cut(s) 631, 1246, 1619
NspI RCATGY 1 cut(s) 562
NspV TTCGAA 1 cut(s) 1400
PaeI GCATGC 1 cut(s) 562
PagI TCATGA 1 cut(s) 142
PctI GAATGC 3 cut(s) 548, 660, 1030
PfeI GAWTC 6 cut(s) 273, 316, 1036, 1297, 1336, 1478
PflMI CCANNNNNTGG 1 cut(s) 1245
PkrI GCNGC 2 cut(s) 40, 1585
PleI GAGTC 5 cut(s) 108, 220, 372, 495, 630
PpsI GAGTC 5 cut(s) 108, 220, 372, 495, 630
Ppu21I YACGTR 1 cut(s) 1144
PspN4I GGNNCC 1 cut(s) 1645
PspPI GGNCC 1 cut(s) 541
PstNI CAGNNNCTG 1 cut(s) 1259
PsuI RGATCY 3 cut(s) 187, 775, 1671
RsaI GTAC 3 cut(s) 973, 1211, 1689
RsaNI GTAC 3 cut(s) 972, 1210, 1688
RseI CAYNNNNRTG 4 cut(s) 57, 129, 557, 1324
SaqAI TTAA 6 cut(s) 63, 780, 1056, 1181, 1323, 1699
SatI GCNGC 2 cut(s) 39, 1584
Sau3AI GATC 6 cut(s) 133, 177, 187, 775, 1345, 1671
Sau96I GGNCC 1 cut(s) 541
SchI GAGTC 5 cut(s) 109, 221, 372, 496, 631
ScrFI CCNGG 2 cut(s) 811, 1649
SduI GDGCHC 2 cut(s) 934, 1648
SfaNI GCATC 4 cut(s) 196, 627, 697, 1455
SfuI TTCGAA 1 cut(s) 1400
SmiMI CAYNNNNRTG 4 cut(s) 57, 129, 557, 1324
SmlI CTYRAG 2 cut(s) 594, 1055
SmoI CTYRAG 2 cut(s) 594, 1055
SphI GCATGC 1 cut(s) 562
Sse9I AATT 9 cut(s) 79, 233, 423, 728, 854, 945, 1501, 1574, 1605
SspMI CTAG 9 cut(s) 218, 555, 665, 672, 740, 986, 1274, 1412, 1676
StyD4I CCNGG 2 cut(s) 809, 1647
StyI CCWWGG 1 cut(s) 508
TaaI ACNGT 2 cut(s) 695, 1087
TaiI ACGT 3 cut(s) 1134, 1146, 1456
TaqI TCGA 4 cut(s) 180, 276, 1400, 1603
TasI AATT 9 cut(s) 79, 233, 423, 728, 854, 945, 1501, 1574, 1605
TatI WGTACW 2 cut(s) 1209, 1687
TfiI GAWTC 6 cut(s) 273, 316, 1036, 1297, 1336, 1478
Tru1I TTAA 6 cut(s) 63, 780, 1056, 1181, 1323, 1699
Tru9I TTAA 6 cut(s) 63, 780, 1056, 1181, 1323, 1699
TscAI CASTG 5 cut(s) 31, 367, 934, 1090, 1686
TseFI GTSAC 3 cut(s) 101, 213, 1199
TseI GCWGC 2 cut(s) 38, 1583
Tsp45I GTSAC 3 cut(s) 101, 213, 1199
TspDTI ATGAA 9 cut(s) 159, 418, 492, 996, 1107, 1119, 1329, 1544, 1607
TspGWI ACGGA 1 cut(s) 1199
TspRI CASTG 5 cut(s) 31, 367, 934, 1090, 1686
Van91I CCANNNNNTGG 1 cut(s) 1245
Vha464I CTTAAG 1 cut(s) 1055
XapI RAATTY 3 cut(s) 423, 728, 1574
XbaI TCTAGA 1 cut(s) 664
XceI RCATGY 1 cut(s) 562
XcmI CCANNNNNNNNNTGG 1 cut(s) 1631
XmiI GTMKAC 2 cut(s) 5, 153
XspI CTAG 9 cut(s) 218, 555, 665, 672, 740, 986, 1274, 1412, 1676
Zsp2I ATGCAT 3 cut(s) 631, 1246, 1619
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.