FvH4_6g43820

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000768
Physical Location & Seq
Reverse (-)
33872992 .. 33875767
2776 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g43820.t1

Sequence Viewer

Length: 1728 bp
ATGTCTACCCCAATCTTGGCCAGCAACGGTAGCACTGCTACTGAAACTTCATATCTGGATGTTCAAAGACGGACAGCAGATTACAAGCCCAGCATCTGGAGTTACGAGTTTCTTCAATCGTTACAGGAAGAACTATACGAAGATGATAGGTGGAAGTCGATGGAGGAGTGTGTGAAACATATGCTTGGCTATGATAATGATGCGCAGTCAGTAGAGACTAAACTTGAATTGATTGATGACATCCAACGATTAGGTTTGGGACACCGATTCCAGGCCAGTATAATAGGAACCCTTCATAGAATTATGAAGAATCTTGACCAAGTAACAGACGAGGATACCCCAAGTCTCCACCTCACTGCTCTCAGCTTCAGACTCCTTCGACAGCATGGTTTTCAAGTCTCCCAAGATGTCTTCAAGAATTTCACGGACTGCGACGGCAGCTTCAAGGATTGCCTTTGCAAAGATGTCAAAGGAATGCTGAGTCTGTACGAAGCTTCATTCCTTGGTTTTGAAGGAGAAACCCTCTTGGATGAGGCCCTTGCATTCACCAGCATGCACCTAAAAAACCTCAGCTGCAGGTTACTTGATACTCACGGCAGAAATGTATTAGAGCAAGTGAGTCATGCATTGGAGATGCCATTGCACCACAGAATGCAAAGATTAGAAGCTAGATGGTATATTGAGGTATATAATAAAAGGCAAGATGCAAATCAGATGCTACTTGAATTTGCCAAGCTAGATTACGATGTGGTGCAACAGACATACCAAAGTGATCTTAAAGACTTATCAAGATGGTGGAAGGATATGGGGTTAGCAAAGAAGTTGTCCTTCAGCAGAGACAGATTGATGGAGTGCTTCTTTTGGTCAGTTGGTATAGTGTCTGAACCTCAATTCAGCAATCTCAGAAAAGGGATAACTAAAGTCAGTGTTCTAATATGCACAATTGATGATGTGTATGATGTTTATGGTACTCTGGATGAACTAAAGTTATTCACATCTGTTGTTGAAAGATGGGATGTGAATGCTGTGGAAATTCTACAAGACTACCAGCTGAAGCTCTCTTTCCTTGCTCTCTTCAACACTGTGAATGAAATGGCATATGAAACTTTGAAAGACCAAGGAGTGGACGTCCTTCCTTACTTGACAAAAGCTTGGACTGATATGTGCAAAGCTTTCTTAACGGAGGCAGAGTGGCGTTACAACAATTACACACCCACATTTGAAGAATATATTGCCAATGCATGGATATCAGTGTCCGGGGTGCTCCTATTAGTGCATACATATTTTCTACTGAATCAAAATATCTCAGATGAAGCACTTGAATGCTTAGTGAATCACCATGATCTCTTGCGCTGGCCGTCTCTTATTTTTTTTTCGCTCTCAAACGATTTGGCTACTTCCGAGGCAGAAATAGAGAGAGGTGAAACTGCAACTTCAATATCCTGCATCAATCGTGGAAGTAGTGATGTTTGTGATCAGGCATCTGCTCGCCAATTCATTAGGAATTTGATTGAGAAGAGTTGGAAGAAGATGAACAAAGATGGACTACTAAATGGTGCCAGTGGTGCTTCTTCTCCATTTACAAAGGAATTTGTAGCAGCAGCAACAAACCTTGCTCGGATTGCCCAATGCATATACCAATATGGAGACGGGATCAGTGCTCCGGACAAAATAGCCAAGAACCGGATCCTAGCAGTGCTTCTACAACCAGTTCCAAACAACATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

576

Amino Acids

65.88

Weight (kDa)

5.05

Isoelectric Point (pI)

40.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 33 - 210 3.3e-50 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 267 - 510 4.3e-78 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 307 - 510 2.1e-50 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1131
Acc16I TGCGCA 1 cut(s) 204
Acc36I ACCTGC 1 cut(s) 567
AccB1I GGYRCC 1 cut(s) 1556
AccB7I CCANNNNNTGG 3 cut(s) 96, 1123, 1242
AccI GTMKAC 1 cut(s) 5
AccIII TCCGGA 1 cut(s) 1663
AclWI GGATC 3 cut(s) 1661, 1681, 1694
AcoI YGGCCR 2 cut(s) 18, 1355
AcsI RAATTY 5 cut(s) 418, 725, 1032, 1504, 1589
AcuI CTGAAG 3 cut(s) 352, 814, 1073
AcyI GRCGYC 1 cut(s) 1128
AfaI GTAC 2 cut(s) 488, 970
AfiI CCNNNNNNNGG 6 cut(s) 16, 96, 271, 1123, 1242, 1683
AjnI CCWGG 1 cut(s) 270
Alw21I GWGCWC 2 cut(s) 1266, 1663
Alw26I GTCTC 6 cut(s) 209, 350, 403, 831, 1365, 1641
AlwI GGATC 3 cut(s) 1661, 1681, 1694
AlwNI CAGNNNCTG 1 cut(s) 96
Aor13HI TCCGGA 1 cut(s) 1663
AoxI GGCC 4 cut(s) 18, 273, 534, 1355
ApeKI GCWGC 4 cut(s) 438, 573, 1598, 1601
ApoI RAATTY 5 cut(s) 418, 725, 1032, 1504, 1589
ArsI GACNNNNNNTTYG 2 cut(s) 809, 841
AspLEI GCGC 2 cut(s) 205, 1353
AspS9I GGNCC 1 cut(s) 535
AsuC2I CCSGG 1 cut(s) 1258
AsuHPI GGTGA 3 cut(s) 538, 1328, 1433
BalI TGGCCA 1 cut(s) 20
BamHI GGATCC 1 cut(s) 1686
BanI GGYRCC 1 cut(s) 1556
BbsI GAAGAC 1 cut(s) 403
Bbv12I GWGCWC 2 cut(s) 1266, 1663
BbvCI CCTCAGC 1 cut(s) 569
BbvI GCAGC 4 cut(s) 450, 560, 1610, 1613
BccI CCATC 6 cut(s) 154, 666, 786, 841, 1005, 1535
BceAI ACGGC 3 cut(s) 451, 610, 1342
BciT130I CCWGG 1 cut(s) 272
BciVI GTATCC 1 cut(s) 328
BclI TGATCA 1 cut(s) 1474
BcnI CCSGG 1 cut(s) 1258
BcoDI GTCTC 6 cut(s) 209, 350, 403, 831, 1365, 1641
BfaI CTAG 3 cut(s) 669, 737, 1691
BfmI CTRYAG 1 cut(s) 574
BfuAI ACCTGC 1 cut(s) 567
BfuI GTATCC 1 cut(s) 328
BisI GCNGC 4 cut(s) 439, 574, 1599, 1602
BlsI GCNGC 4 cut(s) 440, 575, 1600, 1603
Bme1390I CCNGG 2 cut(s) 272, 1258
BmgT120I GGNCC 1 cut(s) 535
BmiI GGNNCC 3 cut(s) 289, 1558, 1688
BmrFI CCNGG 2 cut(s) 272, 1258
BmsI GCATC 7 cut(s) 102, 190, 624, 694, 705, 1455, 1490
BpiI GAAGAC 1 cut(s) 403
BplI GAGNNNNNCTC 2 cut(s) 507, 539
BpmI CTGGAG 1 cut(s) 118
Bpu10I CCTNAGC 1 cut(s) 569
BpuMI CCSGG 1 cut(s) 1258
BsaBI GATNNNNATC 1 cut(s) 708
BsaHI GRCGYC 1 cut(s) 1128
BsaJI CCNNGG 4 cut(s) 502, 1117, 1257, 1401
BsaWI WCCGGW 2 cut(s) 1663, 1683
BsaXI ACNNNNNCTCC 4 cut(s) 1113, 1143, 1175, 1205
Bsc4I CCNNNNNNNGG 6 cut(s) 16, 96, 271, 1123, 1242, 1683
Bse1I ACTGG 3 cut(s) 276, 1560, 1709
Bse3DI GCAATG 1 cut(s) 638
Bse8I GATNNNNATC 1 cut(s) 708
BseAI TCCGGA 1 cut(s) 1663
BseBI CCWGG 1 cut(s) 272
BseDI CCNNGG 4 cut(s) 502, 1117, 1257, 1401
BseGI GGATG 5 cut(s) 64, 240, 535, 982, 1021
BseJI GATNNNNATC 1 cut(s) 708
BseLI CCNNNNNNNGG 6 cut(s) 16, 96, 271, 1123, 1242, 1683
BseMI GCAATG 1 cut(s) 638
BseMII CTCAG 5 cut(s) 376, 470, 583, 916, 1320
BseNI ACTGG 3 cut(s) 276, 1560, 1709
BseRI GAGGAG 1 cut(s) 179
BseXI GCAGC 4 cut(s) 450, 560, 1610, 1613
BseYI CCCAGC 1 cut(s) 89
BshFI GGCC 4 cut(s) 20, 275, 536, 1357
BshNI GGYRCC 1 cut(s) 1556
BsiHKAI GWGCWC 2 cut(s) 1266, 1663
BsiSI CCGG 3 cut(s) 1257, 1664, 1684
BslFI GGGAC 1 cut(s) 273
BslI CCNNNNNNNGG 6 cut(s) 16, 96, 271, 1123, 1242, 1683
BsmAI GTCTC 6 cut(s) 209, 350, 403, 831, 1365, 1641
BsmBI CGTCTC 2 cut(s) 1365, 1641
BsmFI GGGAC 1 cut(s) 273
BsmI GAATGC 5 cut(s) 480, 542, 657, 1027, 1328
BsnI GGCC 4 cut(s) 20, 275, 536, 1357
Bsp1286I GDGCHC 2 cut(s) 1266, 1663
Bsp13I TCCGGA 1 cut(s) 1663
Bsp143I GATC 5 cut(s) 772, 1342, 1474, 1653, 1686
BspANI GGCC 4 cut(s) 20, 275, 536, 1357
BspCNI CTCAG 5 cut(s) 375, 471, 582, 915, 1319
BspEI TCCGGA 1 cut(s) 1663
BspLI GGNNCC 3 cut(s) 289, 1558, 1688
BspMAI CTGCAG 1 cut(s) 578
BspMI ACCTGC 1 cut(s) 567
BspPI GGATC 3 cut(s) 1661, 1681, 1694
BspT107I GGYRCC 1 cut(s) 1556
BsrDI GCAATG 1 cut(s) 638
BsrI ACTGG 3 cut(s) 276, 1560, 1709
BssECI CCNNGG 4 cut(s) 502, 1117, 1257, 1401
BssMI GATC 5 cut(s) 772, 1342, 1474, 1653, 1686
BssNI GRCGYC 1 cut(s) 1128
BssT1I CCWWGG 2 cut(s) 502, 1117
Bst2UI CCWGG 1 cut(s) 272
Bst4CI ACNGT 2 cut(s) 29, 1084
Bst6I CTCTTC 2 cut(s) 1079, 1511
BstACI GRCGYC 1 cut(s) 1128
BstC8I GCNNGC 4 cut(s) 22, 554, 1355, 1489
BstDEI CTNAG 6 cut(s) 362, 479, 569, 902, 1306, 1327
BstF5I GGATG 5 cut(s) 64, 240, 535, 982, 1021
BstHHI GCGC 2 cut(s) 205, 1353
BstKTI GATC 5 cut(s) 775, 1345, 1477, 1656, 1689
BstMAI GTCTC 6 cut(s) 209, 350, 403, 831, 1365, 1641
BstMBI GATC 5 cut(s) 772, 1342, 1474, 1653, 1686
BstMWI GCNNNNNNNGC 4 cut(s) 30, 438, 1565, 1622
BstNI CCWGG 1 cut(s) 272
BstNSI RCATGY 1 cut(s) 556
BstSCI CCNGG 2 cut(s) 270, 1256
BstSFI CTRYAG 1 cut(s) 574
BstV1I GCAGC 4 cut(s) 450, 560, 1610, 1613
BstV2I GAAGAC 1 cut(s) 403
BstX2I RGATCY 1 cut(s) 1686
BstYI RGATCY 1 cut(s) 1686
BsuI GTATCC 1 cut(s) 328
BsuRI GGCC 4 cut(s) 20, 275, 536, 1357
BtsCI GGATG 5 cut(s) 64, 240, 535, 982, 1021
BtsI GCAGTG 3 cut(s) 33, 354, 1701
BtsIMutI CAGTG 8 cut(s) 33, 354, 931, 1080, 1257, 1567, 1663, 1701
BveI ACCTGC 1 cut(s) 567
Cac8I GCNNGC 4 cut(s) 22, 554, 1355, 1489
CaiI CAGNNNCTG 1 cut(s) 96
CfoI GCGC 2 cut(s) 205, 1353
Cfr13I GGNCC 1 cut(s) 535
Csp6I GTAC 2 cut(s) 487, 969
CviAII CATG 5 cut(s) 386, 553, 623, 1242, 1340
CviQI GTAC 2 cut(s) 487, 969
DdeI CTNAG 6 cut(s) 362, 479, 569, 902, 1306, 1327
DpnI GATC 5 cut(s) 774, 1344, 1476, 1655, 1688
DpnII GATC 5 cut(s) 772, 1342, 1474, 1653, 1686
EaeI YGGCCR 2 cut(s) 18, 1355
Eam1104I CTCTTC 2 cut(s) 1079, 1511
EarI CTCTTC 2 cut(s) 1079, 1511
Eco130I CCWWGG 2 cut(s) 502, 1117
Eco32I GATATC 1 cut(s) 1248
Eco57I CTGAAG 3 cut(s) 352, 814, 1073
EcoO109I RGGNCCY 1 cut(s) 535
EcoRII CCWGG 1 cut(s) 270
EcoRV GATATC 1 cut(s) 1248
EcoT14I CCWWGG 2 cut(s) 502, 1117
EcoT22I ATGCAT 3 cut(s) 628, 1243, 1634
ErhI CCWWGG 2 cut(s) 502, 1117
Esp3I CGTCTC 2 cut(s) 1365, 1641
FaeI CATG 5 cut(s) 389, 556, 626, 1245, 1343
FalI AAGNNNNNCTT 2 cut(s) 812, 844
FaqI GGGAC 1 cut(s) 273
FatI CATG 5 cut(s) 385, 552, 622, 1241, 1339
FauNDI CATATG 2 cut(s) 180, 1099
FbaI TGATCA 1 cut(s) 1474
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 4 cut(s) 439, 574, 1599, 1602
FokI GGATG 5 cut(s) 71, 227, 542, 989, 1028
Fsp4HI GCNGC 4 cut(s) 439, 574, 1599, 1602
FspBI CTAG 3 cut(s) 669, 737, 1691
FspI TGCGCA 1 cut(s) 204
GlaI GCGC 2 cut(s) 204, 1352
GluI GCNGC 4 cut(s) 439, 574, 1599, 1602
GsaI CCCAGC 1 cut(s) 93
GsuI CTGGAG 1 cut(s) 118
HaeIII GGCC 4 cut(s) 20, 275, 536, 1357
HapII CCGG 3 cut(s) 1257, 1664, 1684
HhaI GCGC 2 cut(s) 205, 1353
Hin1I GRCGYC 1 cut(s) 1128
Hin1II CATG 5 cut(s) 389, 556, 626, 1245, 1343
Hin6I GCGC 2 cut(s) 203, 1351
HinP1I GCGC 2 cut(s) 203, 1351
HindIII AAGCTT 3 cut(s) 492, 1149, 1170
HinfI GANTC 7 cut(s) 267, 310, 372, 481, 619, 1294, 1333
HpaII CCGG 3 cut(s) 1257, 1664, 1684
HphI GGTGA 3 cut(s) 538, 1328, 1433
Hpy166II GTNNAC 2 cut(s) 6, 1126
Hpy188I TCNGA 7 cut(s) 371, 714, 883, 905, 1309, 1402, 1620
Hpy188III TCNNGA 7 cut(s) 56, 97, 314, 415, 789, 974, 1664
Hpy8I GTNNAC 2 cut(s) 6, 1126
Hpy99I CGWCG 1 cut(s) 437
HpyAV CCTTC 6 cut(s) 302, 386, 506, 793, 838, 1142
HpyCH4III ACNGT 2 cut(s) 29, 1084
HpyCH4IV ACGT 1 cut(s) 1128
HpyF10VI GCNNNNNNNGC 4 cut(s) 30, 438, 1565, 1622
HpyF3I CTNAG 6 cut(s) 362, 479, 569, 902, 1306, 1327
HpySE526I ACGT 1 cut(s) 1128
Hsp92I GRCGYC 1 cut(s) 1128
Hsp92II CATG 5 cut(s) 389, 556, 626, 1245, 1343
HspAI GCGC 2 cut(s) 203, 1351
Kpn2I TCCGGA 1 cut(s) 1663
Ksp22I TGATCA 1 cut(s) 1474
Kzo9I GATC 5 cut(s) 772, 1342, 1474, 1653, 1686
LmnI GCTCC 2 cut(s) 1269, 1666
Lsp1109I GCAGC 4 cut(s) 450, 560, 1610, 1613
LweI GCATC 7 cut(s) 102, 190, 624, 694, 705, 1455, 1490
MaeI CTAG 3 cut(s) 669, 737, 1691
MaeII ACGT 1 cut(s) 1128
MaeIII GTNAC 5 cut(s) 101, 120, 322, 579, 1196
MalI GATC 5 cut(s) 774, 1344, 1476, 1655, 1688
MboI GATC 5 cut(s) 772, 1342, 1474, 1653, 1686
MfeI CAATTG 1 cut(s) 942
MflI RGATCY 1 cut(s) 1686
MhlI GDGCHC 2 cut(s) 1266, 1663
MlsI TGGCCA 1 cut(s) 20
MluNI TGGCCA 1 cut(s) 20
MlyI GAGTC 3 cut(s) 366, 490, 628
MmeI TCCRAC 2 cut(s) 268, 1502
Mox20I TGGCCA 1 cut(s) 20
Mph1103I ATGCAT 3 cut(s) 628, 1243, 1634
MroI TCCGGA 1 cut(s) 1663
MscI TGGCCA 1 cut(s) 20
MseI TTAA 2 cut(s) 777, 1178
MslI CAYNNNNRTG 2 cut(s) 551, 1321
Msp20I TGGCCA 1 cut(s) 20
MspA1I CMGCKG 2 cut(s) 573, 1051
MspI CCGG 3 cut(s) 1257, 1664, 1684
MspR9I CCNGG 2 cut(s) 272, 1258
MunI CAATTG 1 cut(s) 942
Mva1269I GAATGC 5 cut(s) 480, 542, 657, 1027, 1328
MvaI CCWGG 1 cut(s) 272
MwoI GCNNNNNNNGC 4 cut(s) 30, 438, 1565, 1622
NciI CCSGG 1 cut(s) 1258
NdeI CATATG 2 cut(s) 180, 1099
NdeII GATC 5 cut(s) 772, 1342, 1474, 1653, 1686
NlaIII CATG 5 cut(s) 389, 556, 626, 1245, 1343
NlaIV GGNNCC 3 cut(s) 289, 1558, 1688
NsbI TGCGCA 1 cut(s) 204
NsiI ATGCAT 3 cut(s) 628, 1243, 1634
NspI RCATGY 1 cut(s) 556
PaeI GCATGC 1 cut(s) 556
PctI GAATGC 5 cut(s) 480, 542, 657, 1027, 1328
PfeI GAWTC 4 cut(s) 267, 310, 1294, 1333
PflMI CCANNNNNTGG 3 cut(s) 96, 1123, 1242
PkrI GCNGC 4 cut(s) 440, 575, 1600, 1603
PleI GAGTC 3 cut(s) 366, 489, 627
PpsI GAGTC 3 cut(s) 366, 489, 627
Psp6I CCWGG 1 cut(s) 270
PspFI CCCAGC 1 cut(s) 89
PspGI CCWGG 1 cut(s) 270
PspN4I GGNNCC 3 cut(s) 289, 1558, 1688
PspPI GGNCC 1 cut(s) 535
PstI CTGCAG 1 cut(s) 578
PstNI CAGNNNCTG 1 cut(s) 96
PsuI RGATCY 1 cut(s) 1686
PvuII CAGCTG 2 cut(s) 573, 1051
RsaI GTAC 2 cut(s) 488, 970
RsaNI GTAC 2 cut(s) 487, 969
RseI CAYNNNNRTG 2 cut(s) 551, 1321
SaqAI TTAA 2 cut(s) 777, 1178
SatI GCNGC 4 cut(s) 439, 574, 1599, 1602
Sau3AI GATC 5 cut(s) 772, 1342, 1474, 1653, 1686
Sau96I GGNCC 1 cut(s) 535
SchI GAGTC 3 cut(s) 366, 490, 628
ScrFI CCNGG 2 cut(s) 272, 1258
SduI GDGCHC 2 cut(s) 1266, 1663
SfaNI GCATC 7 cut(s) 102, 190, 624, 694, 705, 1455, 1490
SfcI CTRYAG 1 cut(s) 574
SmiMI CAYNNNNRTG 2 cut(s) 551, 1321
SphI GCATGC 1 cut(s) 556
SspMI CTAG 3 cut(s) 669, 737, 1691
StyD4I CCNGG 2 cut(s) 270, 1256
StyI CCWWGG 2 cut(s) 502, 1117
TaaI ACNGT 2 cut(s) 29, 1084
TaiI ACGT 1 cut(s) 1131
TaqI TCGA 2 cut(s) 158, 379
TfiI GAWTC 4 cut(s) 267, 310, 1294, 1333
Tru1I TTAA 2 cut(s) 777, 1178
Tru9I TTAA 2 cut(s) 777, 1178
TscAI CASTG 8 cut(s) 40, 361, 931, 1087, 1257, 1567, 1663, 1701
TseI GCWGC 4 cut(s) 438, 573, 1598, 1601
TspGWI ACGGA 3 cut(s) 85, 440, 1196
TspRI CASTG 8 cut(s) 40, 361, 931, 1087, 1257, 1567, 1663, 1701
Van91I CCANNNNNTGG 3 cut(s) 96, 1123, 1242
XapI RAATTY 5 cut(s) 418, 725, 1032, 1504, 1589
XceI RCATGY 1 cut(s) 556
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 3 cut(s) 669, 737, 1691
ZraI GACGTC 1 cut(s) 1129
Zsp2I ATGCAT 3 cut(s) 628, 1243, 1634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.