Prupe.3G275100_v2.0.a1

rRNA methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0009381
Physical Location & Seq
Forward (+)
25374164 .. 25377402
3239 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G275100.2

Sequence Viewer

Length: 975 bp
ATGGCGGTTTCTTCTTCTCCGATTCTATCTCCATTCGGAGTGAATATAATATCTGCGGACCTTGGCTCGTCTTCTACCGGTCTTCCTCGCTTCAATTTCTGCTCCATACAACGCAACAATCGACGGCCATCCCATGTCATCGTCCTCTCTTCGAAGTCGAGTAAGGAATCGTGGAGTGAGGCTAAGCGAGTGTTGATGGAGCAGTATGGTTTCAACCCCGACGAGGCCTTATCTGAGCCGCCTCCGAAGAGCAAGAGGAAGAAGGAGCTAAAAGAGGCAGGCAAAGACAAGCAAATCGCACCAAAGGAGCCTAAGCCACCGCGAACTACCCATAAGTTGCTTACGGTGCTTGGAGGAAAGGCTCGAAGAATGAAGTTGCTCTCTCCAAAGGGCATGGATGTACGCCCAATGATGGAGGTCGTCAAAGGTGCAGCCTTTGATATCCTTCAGGCTGCCGGTGGCTGTCCTGCATCCTTAAGGCCTGGCCGTTGGTTAGACTTGTACAGTGGTACTGGATCTGTTGGAATTGAAGCTATTAGTCGAGGATGTTCTGAGGTACATTTTGTTGAGATGGATCCATGGGTCGTTTCAGATGTTTTACGTCCAAACTTGGAATGGACTGGGTTTCTTGATGTTTCAGTTATACATACTGTTCGTGTTGAAAAGTTCATAGAACGTGCAAAGCAACTTGCAGGTAAAGAACCATTTGATTACATTAGTGTTACCCCTCCGTATATGGAAGTTGACTATGCTGTACTCATGGATCAAATATCAAATTCAGCCTTAGTTGGAGAAGATACCTTTATAGTAGTTGAGTACCCACTAAGGACTGACATGCTGGATTCATGTGGATGCCTTGTGAAGATAACGGATCGTCGGTTTGGTAGGACACACTTGGTTATTTATGGACCCAAGTGGGCTGAGAAGAAGAAGAAGAAAGAAAAGTTACTTCGGGGAGTAGCAGTAGAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cons_hypoth95

Protein Analysis

325

Amino Acids

36.02

Weight (kDa)

9.36

Isoelectric Point (pI)

47.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 683
AccII CGCG 1 cut(s) 322
AciI CCGC 4 cut(s) 5, 56, 239, 320
AclWI GGATC 5 cut(s) 523, 569, 582, 771, 879
AcoI YGGCCR 2 cut(s) 125, 484
AcsI RAATTY 1 cut(s) 775
AcuI CTGAAG 1 cut(s) 431
AfaI GTAC 6 cut(s) 402, 503, 511, 558, 756, 818
AfiI CCNNNNNNNGG 2 cut(s) 223, 412
AflII CTTAAG 1 cut(s) 475
AgeI ACCGGT 1 cut(s) 77
AgsI TTSAA 4 cut(s) 94, 214, 530, 662
AjnI CCWGG 1 cut(s) 481
AluBI AGCT 2 cut(s) 268, 533
AluI AGCT 2 cut(s) 268, 533
AlwI GGATC 5 cut(s) 523, 569, 582, 771, 879
AoxI GGCC 4 cut(s) 125, 225, 479, 484
ApeKI GCWGC 2 cut(s) 431, 452
ApoI RAATTY 1 cut(s) 775
AsiGI ACCGGT 1 cut(s) 77
AspS9I GGNCC 2 cut(s) 58, 908
AsuII TTCGAA 1 cut(s) 152
AvaII GGWCC 2 cut(s) 58, 908
BamHI GGATCC 1 cut(s) 574
BbsI GAAGAC 2 cut(s) 63, 74
BbvI GCAGC 2 cut(s) 439, 443
BccI CCATC 4 cut(s) 136, 190, 406, 565
BceAI ACGGC 2 cut(s) 140, 471
BciT130I CCWGG 1 cut(s) 483
BfrI CTTAAG 1 cut(s) 475
BfuAI ACCTGC 1 cut(s) 683
BisI GCNGC 3 cut(s) 239, 432, 453
BlpI GCTNAGC 1 cut(s) 183
BlsI GCNGC 3 cut(s) 240, 433, 454
Bme1390I CCNGG 1 cut(s) 483
Bme18I GGWCC 2 cut(s) 58, 908
BmgT120I GGNCC 2 cut(s) 58, 908
BmiI GGNNCC 3 cut(s) 309, 576, 910
BmrFI CCNGG 1 cut(s) 483
BmrI ACTGGG 1 cut(s) 630
BmsI GCATC 2 cut(s) 479, 842
BmuI ACTGGG 1 cut(s) 630
BpiI GAAGAC 2 cut(s) 63, 74
Bpu10I CCTNAGC 1 cut(s) 312
Bpu1102I GCTNAGC 1 cut(s) 183
Bpu14I TTCGAA 1 cut(s) 152
BsaJI CCNNGG 2 cut(s) 61, 578
BsaWI WCCGGW 1 cut(s) 77
BsaXI ACNNNNNCTCC 1 cut(s) 948
Bsc4I CCNNNNNNNGG 2 cut(s) 223, 412
Bse118I RCCGGY 2 cut(s) 77, 455
Bse1I ACTGG 2 cut(s) 517, 625
BseBI CCWGG 1 cut(s) 483
BseDI CCNNGG 2 cut(s) 61, 578
BseGI GGATG 5 cut(s) 128, 403, 470, 551, 857
BseLI CCNNNNNNNGG 2 cut(s) 223, 412
BseMII CTCAG 3 cut(s) 225, 543, 912
BseNI ACTGG 2 cut(s) 517, 625
BseXI GCAGC 2 cut(s) 439, 443
BsgI GTGCAG 1 cut(s) 450
Bsh1236I CGCG 1 cut(s) 322
BshFI GGCC 4 cut(s) 127, 227, 481, 486
BshTI ACCGGT 1 cut(s) 77
BsiSI CCGG 2 cut(s) 78, 456
BslI CCNNNNNNNGG 2 cut(s) 223, 412
BsnI GGCC 4 cut(s) 127, 227, 481, 486
Bsp119I TTCGAA 1 cut(s) 152
Bsp1407I TGTACA 1 cut(s) 501
Bsp143I GATC 4 cut(s) 515, 574, 763, 871
Bsp1720I GCTNAGC 1 cut(s) 183
Bsp19I CCATGG 1 cut(s) 578
BspACI CCGC 4 cut(s) 5, 56, 239, 320
BspANI GGCC 4 cut(s) 127, 227, 481, 486
BspCNI CTCAG 3 cut(s) 226, 544, 913
BspFNI CGCG 1 cut(s) 322
BspLI GGNNCC 3 cut(s) 309, 576, 910
BspMI ACCTGC 1 cut(s) 683
BspPI GGATC 5 cut(s) 523, 569, 582, 771, 879
BspQI GCTCTTC 1 cut(s) 242
BspT104I TTCGAA 1 cut(s) 152
BspTI CTTAAG 1 cut(s) 475
BsrFI RCCGGY 2 cut(s) 77, 455
BsrGI TGTACA 1 cut(s) 501
BsrI ACTGG 2 cut(s) 517, 625
BssAI RCCGGY 2 cut(s) 77, 455
BssECI CCNNGG 2 cut(s) 61, 578
BssMI GATC 4 cut(s) 515, 574, 763, 871
BssT1I CCWWGG 2 cut(s) 61, 578
Bst2UI CCWGG 1 cut(s) 483
Bst4CI ACNGT 3 cut(s) 346, 506, 652
Bst6I CTCTTC 2 cut(s) 154, 242
BstAFI CTTAAG 1 cut(s) 475
BstAUI TGTACA 1 cut(s) 501
BstBI TTCGAA 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 280
BstDEI CTNAG 7 cut(s) 183, 234, 312, 552, 784, 824, 921
BstDSI CCRYGG 1 cut(s) 578
BstF5I GGATG 5 cut(s) 128, 403, 470, 551, 857
BstFNI CGCG 1 cut(s) 322
BstKTI GATC 4 cut(s) 518, 577, 766, 874
BstMBI GATC 4 cut(s) 515, 574, 763, 871
BstMWI GCNNNNNNNGC 1 cut(s) 346
BstNI CCWGG 1 cut(s) 483
BstNSI RCATGY 1 cut(s) 838
BstSCI CCNGG 1 cut(s) 481
BstUI CGCG 1 cut(s) 322
BstV1I GCAGC 2 cut(s) 439, 443
BstV2I GAAGAC 2 cut(s) 63, 74
BstX2I RGATCY 2 cut(s) 515, 574
BstYI RGATCY 2 cut(s) 515, 574
BsuRI GGCC 4 cut(s) 127, 227, 481, 486
BtgI CCRYGG 1 cut(s) 578
BtsCI GGATG 5 cut(s) 128, 403, 470, 551, 857
BtsIMutI CAGTG 1 cut(s) 511
BveI ACCTGC 1 cut(s) 683
Cac8I GCNNGC 1 cut(s) 280
Cfr10I RCCGGY 2 cut(s) 77, 455
Cfr13I GGNCC 2 cut(s) 58, 908
Csp6I GTAC 6 cut(s) 401, 502, 510, 557, 755, 817
CspAI ACCGGT 1 cut(s) 77
CviAII CATG 6 cut(s) 134, 394, 579, 760, 835, 846
CviQI GTAC 6 cut(s) 401, 502, 510, 557, 755, 817
DdeI CTNAG 7 cut(s) 183, 234, 312, 552, 784, 824, 921
DpnI GATC 4 cut(s) 517, 576, 765, 873
DpnII GATC 4 cut(s) 515, 574, 763, 871
EaeI YGGCCR 2 cut(s) 125, 484
Eam1104I CTCTTC 2 cut(s) 154, 242
EarI CTCTTC 2 cut(s) 154, 242
Eco130I CCWWGG 2 cut(s) 61, 578
Eco147I AGGCCT 2 cut(s) 227, 481
Eco32I GATATC 1 cut(s) 442
Eco47I GGWCC 2 cut(s) 58, 908
Eco57I CTGAAG 1 cut(s) 431
EcoRII CCWGG 1 cut(s) 481
EcoRV GATATC 1 cut(s) 442
EcoT14I CCWWGG 2 cut(s) 61, 578
ErhI CCWWGG 2 cut(s) 61, 578
FaeI CATG 6 cut(s) 137, 397, 582, 763, 838, 849
FatI CATG 6 cut(s) 133, 393, 578, 759, 834, 845
Fnu4HI GCNGC 3 cut(s) 239, 432, 453
FokI GGATG 5 cut(s) 115, 410, 457, 558, 864
Fsp4HI GCNGC 3 cut(s) 239, 432, 453
GluI GCNGC 3 cut(s) 239, 432, 453
HaeIII GGCC 4 cut(s) 127, 227, 481, 486
HapII CCGG 2 cut(s) 78, 456
Hin1II CATG 6 cut(s) 137, 397, 582, 763, 838, 849
HincII GTYRAC 1 cut(s) 745
HindII GTYRAC 1 cut(s) 745
HinfI GANTC 3 cut(s) 22, 167, 842
HpaII CCGG 2 cut(s) 78, 456
Hpy166II GTNNAC 1 cut(s) 745
Hpy188I TCNGA 6 cut(s) 21, 38, 235, 246, 553, 592
Hpy188III TCNNGA 1 cut(s) 629
Hpy8I GTNNAC 1 cut(s) 745
Hpy99I CGWCG 3 cut(s) 126, 224, 879
HpyAV CCTTC 2 cut(s) 256, 455
HpyCH4III ACNGT 3 cut(s) 346, 506, 652
HpyCH4IV ACGT 2 cut(s) 601, 676
HpyCH4V TGCA 4 cut(s) 431, 470, 680, 692
HpyF10VI GCNNNNNNNGC 1 cut(s) 346
HpyF3I CTNAG 7 cut(s) 183, 234, 312, 552, 784, 824, 921
HpySE526I ACGT 2 cut(s) 601, 676
Hsp92II CATG 6 cut(s) 137, 397, 582, 763, 838, 849
Kzo9I GATC 4 cut(s) 515, 574, 763, 871
LguI GCTCTTC 1 cut(s) 242
LmnI GCTCC 4 cut(s) 107, 199, 265, 307
Lsp1109I GCAGC 2 cut(s) 439, 443
LweI GCATC 2 cut(s) 479, 842
MaeII ACGT 2 cut(s) 601, 676
MaeIII GTNAC 2 cut(s) 721, 945
MalI GATC 4 cut(s) 517, 576, 765, 873
MboI GATC 4 cut(s) 515, 574, 763, 871
MflI RGATCY 2 cut(s) 515, 574
MluCI AATT 3 cut(s) 94, 525, 775
MmeI TCCRAC 2 cut(s) 502, 769
MseI TTAA 1 cut(s) 476
MslI CAYNNNNRTG 1 cut(s) 850
MspCI CTTAAG 1 cut(s) 475
MspI CCGG 2 cut(s) 78, 456
MspR9I CCNGG 1 cut(s) 483
MvaI CCWGG 1 cut(s) 483
MvnI CGCG 1 cut(s) 322
MwoI GCNNNNNNNGC 1 cut(s) 346
NcoI CCATGG 1 cut(s) 578
NdeII GATC 4 cut(s) 515, 574, 763, 871
NlaIII CATG 6 cut(s) 137, 397, 582, 763, 838, 849
NlaIV GGNNCC 3 cut(s) 309, 576, 910
NspI RCATGY 1 cut(s) 838
NspV TTCGAA 1 cut(s) 152
PceI AGGCCT 2 cut(s) 227, 481
PciSI GCTCTTC 1 cut(s) 242
PcsI WCGNNNNNNNCGW 1 cut(s) 118
PfeI GAWTC 3 cut(s) 22, 167, 842
PinAI ACCGGT 1 cut(s) 77
PkrI GCNGC 3 cut(s) 240, 433, 454
Psp6I CCWGG 1 cut(s) 481
PspGI CCWGG 1 cut(s) 481
PspN4I GGNNCC 3 cut(s) 309, 576, 910
PspPI GGNCC 2 cut(s) 58, 908
PsuI RGATCY 2 cut(s) 515, 574
RsaI GTAC 6 cut(s) 402, 503, 511, 558, 756, 818
RsaNI GTAC 6 cut(s) 401, 502, 510, 557, 755, 817
RseI CAYNNNNRTG 1 cut(s) 850
SapI GCTCTTC 1 cut(s) 242
SaqAI TTAA 1 cut(s) 476
SatI GCNGC 3 cut(s) 239, 432, 453
Sau3AI GATC 4 cut(s) 515, 574, 763, 871
Sau96I GGNCC 2 cut(s) 58, 908
ScrFI CCNGG 1 cut(s) 483
SfaNI GCATC 2 cut(s) 479, 842
SfuI TTCGAA 1 cut(s) 152
SinI GGWCC 2 cut(s) 58, 908
SmiMI CAYNNNNRTG 1 cut(s) 850
SmlI CTYRAG 1 cut(s) 475
SmoI CTYRAG 1 cut(s) 475
Sse9I AATT 3 cut(s) 94, 525, 775
SseBI AGGCCT 2 cut(s) 227, 481
SsiI CCGC 4 cut(s) 5, 56, 239, 320
StuI AGGCCT 2 cut(s) 227, 481
StyD4I CCNGG 1 cut(s) 481
StyI CCWWGG 2 cut(s) 61, 578
TaaI ACNGT 3 cut(s) 346, 506, 652
TaiI ACGT 2 cut(s) 604, 679
TaqI TCGA 5 cut(s) 121, 152, 158, 364, 541
TasI AATT 3 cut(s) 94, 525, 775
TatI WGTACW 2 cut(s) 501, 754
TauI GCSGC 1 cut(s) 241
TfiI GAWTC 3 cut(s) 22, 167, 842
Tru1I TTAA 1 cut(s) 476
Tru9I TTAA 1 cut(s) 476
TscAI CASTG 1 cut(s) 511
TseI GCWGC 2 cut(s) 431, 452
TspDTI ATGAA 3 cut(s) 386, 658, 834
TspGWI ACGGA 2 cut(s) 720, 884
TspRI CASTG 1 cut(s) 511
Vha464I CTTAAG 1 cut(s) 475
VpaK11BI GGWCC 2 cut(s) 58, 908
XapI RAATTY 1 cut(s) 775
XceI RCATGY 1 cut(s) 838
XcmI CCANNNNNNNNNTGG 1 cut(s) 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.