Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026371.1

Orthogroup ID

OG0009381

Physical Location & Seq

Genomic Coordinates Reverse (-)

1274 .. 4441

Gene Structure 3168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026371.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

atggagggttgtgagagtgacgcgtggcgagtggaacgtgatgccaagtgttcttgggataggagctacttgggcctggatgtgaatgggcctgagtatggtccattggtgaagattttcctcctttacttggctacttgccgagagcttgaggtcgagctcaggcaagtagcaatggcgctttcatcgtctacaactctatctccgttcactgtgaacataaccacggaattcctcggctcatcttcaacctctcttcctcgctccaatttcatctccagaccatgcaccaatcgccgaccttcacctctcatcgtcctttcctcaaagtccggcgatcgagcttggaacgaggccaagcgacagttgatggagcagtacggcttcgaccccgacgtcgccttgactgagccgactcggaagggaaagaagaagaagagcagtactgagctacaggaggcctcacaggctgagcctaagcccaagagaactacgcataagttgcttcaggtgcttggaggaaaggctcgaagaatgaagttgctgtctccaaagggtatggatgtacgaccaatgatggaggtcgtgaaaggtgcagcctttgatatcctgcaggctgcaggtggctgtcctgcatcgttaaggcctggccgttggttggacttgtacagtggtactggatctgttggaattgaagctattagccgaggatgttctgaggtgcattttgttgagatggatccgtgggtggtttcagaggttctacgtccaaacttggaatggactggatttcttgatgtttcagttatacatgctgtgcgtgttgaaaagttcatagaacgtgcagagaaacttgctggtaaagaaccatttgattacattagtgttacccctccgtatacacaagttgactattcagtactgatggatcaaatatcaaactcggcattagttggagaaaatacctttatagtggttgagtatgcaacaaggaccgacatgcttgattcatgtggatgtcttctgaagataaccgatcggcggtttggcaggacacacttggctatttatggacccaagtgggcccagaagaagaagaagttagaaaagtcactacggggagtagcagtagaactgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cons_hypoth95

Protein Analysis

379

Amino Acids

42.29

Weight (kDa)

8.88

Isoelectric Point (pI)

44.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28460 AT3G28460 AT3G28460
fragaria_vesca	FvH4_6g49670 FvH4_6g49670
malus_domestica	MD09G1042700.v1.1 MD17G1044200.v1.1
prunus_persica	Prupe.3G275100_v2.0.a1 Prupe.3G275100_v2.0.a1 Prupe.3G275100_v2.0.a1
pyrus_communis	pycom111g03330
rosa_chinensis	RchiOBHm_Chr2g0169691
rosa_laevigata	RLG00000021895
rosa_multiflora	Rmu_sc0013280.1_g000001 Rmu_sc0026371.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081880
rosa_rugosa	Rorug02G0542200
rosa_samantha	Rh2AG614500 Rh2BG626800 Rh2CG596200 Rh2DG637600
rosa_wichuraiana	Rw2G050940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	611
AasI	GACNNNNNNGTC	1 cut(s)	395
AatII	GACGTC	1 cut(s)	399
Acc36I	ACCTGC	1 cut(s)	611
AccI	GTMKAC	2 cut(s)	191, 899
AccII	CGCG	1 cut(s)	23
AciI	CCGC	1 cut(s)	1042
AclWI	GGATC	4 cut(s)	688, 734, 747, 936
AcoI	YGGCCR	1 cut(s)	649
AcsI	RAATTY	1 cut(s)	230
AcuI	CTGAAG	2 cut(s)	491, 1046
AcyI	GRCGYC	1 cut(s)	396
AfaI	GTAC	6 cut(s)	380, 445, 567, 668, 676, 921
AfiI	CCNNNNNNNGG	4 cut(s)	98, 130, 658, 1041
AflIII	ACRYGT	1 cut(s)	21
AgsI	TTSAA	3 cut(s)	249, 695, 827
AjnI	CCWGG	2 cut(s)	75, 646
AluBI	AGCT	6 cut(s)	66, 148, 160, 344, 451, 698
AluI	AGCT	6 cut(s)	66, 148, 160, 344, 451, 698
Alw21I	GWGCWC	1 cut(s)	162
Alw26I	GTCTC	1 cut(s)	552
AlwI	GGATC	4 cut(s)	688, 734, 747, 936
AoxI	GGCC	7 cut(s)	73, 89, 354, 459, 644, 649, 1083
ApaI	GGGCCC	1 cut(s)	1087
ApeKI	GCWGC	2 cut(s)	596, 617
ApoI	RAATTY	1 cut(s)	230
Asp700I	GAANNNNTTC	1 cut(s)	116
AspLEI	GCGC	1 cut(s)	181
AspS9I	GGNCC	7 cut(s)	73, 89, 101, 993, 1073, 1083, 1084
AsuHPI	GGTGA	2 cut(s)	121, 297
AvaII	GGWCC	3 cut(s)	101, 993, 1073
BaeGI	GKGCMC	1 cut(s)	1087
BamHI	GGATCC	1 cut(s)	739
BanII	GRGCYC	2 cut(s)	162, 1087
BbsI	GAAGAC	1 cut(s)	1013
Bbv12I	GWGCWC	1 cut(s)	162
BbvI	GCAGC	2 cut(s)	604, 608
BccI	CCATC	4 cut(s)	364, 571, 730, 919
BceAI	ACGGC	2 cut(s)	397, 636
BciT130I	CCWGG	2 cut(s)	77, 648
BcoDI	GTCTC	1 cut(s)	552
BfmI	CTRYAG	4 cut(s)	452, 611, 618, 1136
BfoI	RGCGCY	1 cut(s)	182
BfuAI	ACCTGC	1 cut(s)	611
BglI	GCCNNNNNGGC	1 cut(s)	467
BisI	GCNGC	2 cut(s)	597, 618
BlpI	GCTNAGC	1 cut(s)	471
BlsI	GCNGC	2 cut(s)	598, 619
BmcAI	AGTACT	2 cut(s)	445, 921
Bme1390I	CCNGG	2 cut(s)	77, 648
Bme18I	GGWCC	3 cut(s)	101, 993, 1073
BmgT120I	GGNCC	7 cut(s)	73, 89, 101, 993, 1073, 1083, 1084
BmiI	GGNNCC	3 cut(s)	741, 1075, 1085
BmrFI	CCNGG	2 cut(s)	77, 648
BmsI	GCATC	2 cut(s)	31, 644
BpiI	GAAGAC	1 cut(s)	1013
BpmI	CTGGAG	1 cut(s)	262
Bpu10I	CCTNAGC	2 cut(s)	161, 477
Bpu1102I	GCTNAGC	1 cut(s)	471
BpuEI	CTTGAG	1 cut(s)	170
BsaHI	GRCGYC	1 cut(s)	396
BsaJI	CCNNGG	4 cut(s)	225, 235, 706, 743
BsaXI	ACNNNNNCTCC	3 cut(s)	187, 217, 1113
Bsc4I	CCNNNNNNNGG	4 cut(s)	98, 130, 658, 1041
Bse1I	ACTGG	2 cut(s)	682, 790
Bse3DI	GCAATG	1 cut(s)	180
BseBI	CCWGG	2 cut(s)	77, 648
BseDI	CCNNGG	4 cut(s)	225, 235, 706, 743
BseGI	GGATG	4 cut(s)	85, 568, 716, 1022
BseLI	CCNNNNNNNGG	4 cut(s)	98, 130, 658, 1041
BseMI	GCAATG	1 cut(s)	180
BseMII	CTCAG	6 cut(s)	84, 175, 399, 438, 462, 708
BseNI	ACTGG	2 cut(s)	682, 790
BseSI	GKGCMC	1 cut(s)	1087
BseXI	GCAGC	2 cut(s)	604, 608
BsgI	GTGCAG	2 cut(s)	615, 864
Bsh1236I	CGCG	1 cut(s)	23
Bsh1285I	CGRYCG	2 cut(s)	340, 1039
BshFI	GGCC	7 cut(s)	75, 91, 356, 461, 646, 651, 1085
BsiEI	CGRYCG	2 cut(s)	340, 1039
BsiHKAI	GWGCWC	1 cut(s)	162
BsiSI	CCGG	1 cut(s)	333
BslI	CCNNNNNNNGG	4 cut(s)	98, 130, 658, 1041
BsmAI	GTCTC	1 cut(s)	552
BsnI	GGCC	7 cut(s)	75, 91, 356, 461, 646, 651, 1085
Bsp120I	GGGCCC	1 cut(s)	1083
Bsp1286I	GDGCHC	2 cut(s)	162, 1087
Bsp1407I	TGTACA	1 cut(s)	666
Bsp143I	GATC	5 cut(s)	337, 680, 739, 928, 1036
Bsp1720I	GCTNAGC	1 cut(s)	471
BspACI	CCGC	1 cut(s)	1042
BspANI	GGCC	7 cut(s)	75, 91, 356, 461, 646, 651, 1085
BspCNI	CTCAG	6 cut(s)	85, 174, 400, 439, 463, 709
BspFNI	CGCG	1 cut(s)	23
BspLI	GGNNCC	3 cut(s)	741, 1075, 1085
BspMAI	CTGCAG	2 cut(s)	615, 622
BspMI	ACCTGC	1 cut(s)	611
BspPI	GGATC	4 cut(s)	688, 734, 747, 936
BspQI	GCTCTTC	1 cut(s)	431
BsrDI	GCAATG	1 cut(s)	180
BsrGI	TGTACA	1 cut(s)	666
BsrI	ACTGG	2 cut(s)	682, 790
BssECI	CCNNGG	4 cut(s)	225, 235, 706, 743
BssMI	GATC	5 cut(s)	337, 680, 739, 928, 1036
BssNAI	GTATAC	1 cut(s)	900
BssNI	GRCGYC	1 cut(s)	396
Bst1107I	GTATAC	1 cut(s)	900
Bst2UI	CCWGG	2 cut(s)	77, 648
Bst4CI	ACNGT	4 cut(s)	214, 366, 671, 1137
Bst6I	CTCTTC	2 cut(s)	261, 431
BstACI	GRCGYC	1 cut(s)	396
BstAPI	GCANNNNNTGC	1 cut(s)	502
BstAUI	TGTACA	1 cut(s)	666
BstC8I	GCNNGC	1 cut(s)	615
BstDEI	CTNAG	7 cut(s)	93, 161, 408, 447, 471, 477, 717
BstDSI	CCRYGG	2 cut(s)	225, 743
BstF5I	GGATG	4 cut(s)	85, 568, 716, 1022
BstFNI	CGCG	1 cut(s)	23
BstH2I	RGCGCY	1 cut(s)	182
BstHHI	GCGC	1 cut(s)	181
BstKTI	GATC	5 cut(s)	340, 683, 742, 931, 1039
BstMAI	GTCTC	1 cut(s)	552
BstMBI	GATC	5 cut(s)	337, 680, 739, 928, 1036
BstMCI	CGRYCG	2 cut(s)	340, 1039
BstMWI	GCNNNNNNNGC	5 cut(s)	72, 294, 467, 502, 511
BstNI	CCWGG	2 cut(s)	77, 648
BstNSI	RCATGY	2 cut(s)	815, 1003
BstSCI	CCNGG	2 cut(s)	75, 646
BstSFI	CTRYAG	4 cut(s)	452, 611, 618, 1136
BstSLI	GKGCMC	1 cut(s)	1087
BstUI	CGCG	1 cut(s)	23
BstV1I	GCAGC	2 cut(s)	604, 608
BstV2I	GAAGAC	1 cut(s)	1013
BstX2I	RGATCY	2 cut(s)	680, 739
BstYI	RGATCY	2 cut(s)	680, 739
BstZ17I	GTATAC	1 cut(s)	900
BsuRI	GGCC	7 cut(s)	75, 91, 356, 461, 646, 651, 1085
BtgI	CCRYGG	2 cut(s)	225, 743
BtsCI	GGATG	4 cut(s)	85, 568, 716, 1022
BtsIMutI	CAGTG	2 cut(s)	210, 676
BveI	ACCTGC	1 cut(s)	611
Cac8I	GCNNGC	1 cut(s)	615
CfoI	GCGC	1 cut(s)	181
Cfr13I	GGNCC	7 cut(s)	73, 89, 101, 993, 1073, 1083, 1084
CseI	GACGC	1 cut(s)	29
Csp6I	GTAC	6 cut(s)	379, 444, 566, 667, 675, 920
CviAII	CATG	4 cut(s)	285, 812, 1000, 1011
CviQI	GTAC	6 cut(s)	379, 444, 566, 667, 675, 920
DdeI	CTNAG	7 cut(s)	93, 161, 408, 447, 471, 477, 717
DpnI	GATC	5 cut(s)	339, 682, 741, 930, 1038
DpnII	GATC	5 cut(s)	337, 680, 739, 928, 1036
DrdI	GACNNNNNNGTC	1 cut(s)	395
DseDI	GACNNNNNNGTC	1 cut(s)	395
EaeI	YGGCCR	1 cut(s)	649
Eam1104I	CTCTTC	2 cut(s)	261, 431
EarI	CTCTTC	2 cut(s)	261, 431
Ecl136II	GAGCTC	1 cut(s)	160
Eco147I	AGGCCT	2 cut(s)	461, 646
Eco24I	GRGCYC	2 cut(s)	162, 1087
Eco32I	GATATC	1 cut(s)	607
Eco47I	GGWCC	3 cut(s)	101, 993, 1073
Eco53kI	GAGCTC	1 cut(s)	160
Eco57I	CTGAAG	2 cut(s)	491, 1046
EcoICRI	GAGCTC	1 cut(s)	160
EcoRI	GAATTC	1 cut(s)	230
EcoRII	CCWGG	2 cut(s)	75, 646
EcoRV	GATATC	1 cut(s)	607
EcoT38I	GRGCYC	2 cut(s)	162, 1087
FaeI	CATG	4 cut(s)	288, 815, 1003, 1014
FatI	CATG	4 cut(s)	284, 811, 999, 1010
FblI	GTMKAC	2 cut(s)	191, 899
Fnu4HI	GCNGC	2 cut(s)	597, 618
FokI	GGATG	4 cut(s)	92, 575, 723, 1029
FriOI	GRGCYC	2 cut(s)	162, 1087
Fsp4HI	GCNGC	2 cut(s)	597, 618
GlaI	GCGC	1 cut(s)	180
GluI	GCNGC	2 cut(s)	597, 618
GsuI	CTGGAG	1 cut(s)	262
HaeII	RGCGCY	1 cut(s)	182
HaeIII	GGCC	7 cut(s)	75, 91, 356, 461, 646, 651, 1085
HapII	CCGG	1 cut(s)	333
HgaI	GACGC	1 cut(s)	29
HhaI	GCGC	1 cut(s)	181
Hin1I	GRCGYC	1 cut(s)	396
Hin1II	CATG	4 cut(s)	288, 815, 1003, 1014
Hin6I	GCGC	1 cut(s)	179
HinP1I	GCGC	1 cut(s)	179
HincII	GTYRAC	1 cut(s)	910
HindII	GTYRAC	1 cut(s)	910
HinfI	GANTC	2 cut(s)	415, 1007
HpaII	CCGG	1 cut(s)	333
HphI	GGTGA	2 cut(s)	121, 297
Hpy166II	GTNNAC	5 cut(s)	192, 210, 217, 900, 910
Hpy188I	TCNGA	4 cut(s)	420, 718, 757, 1026
Hpy188III	TCNNGA	3 cut(s)	279, 586, 794
Hpy8I	GTNNAC	5 cut(s)	192, 210, 217, 900, 910
Hpy99I	CGWCG	2 cut(s)	398, 401
HpyAV	CCTTC	2 cut(s)	312, 415
HpyCH4III	ACNGT	4 cut(s)	214, 366, 671, 1137
HpyCH4IV	ACGT	4 cut(s)	37, 396, 766, 841
HpyCH4V	TGCA	8 cut(s)	288, 596, 613, 620, 635, 724, 845, 986
HpyF10VI	GCNNNNNNNGC	5 cut(s)	72, 294, 467, 502, 511
HpyF3I	CTNAG	7 cut(s)	93, 161, 408, 447, 471, 477, 717
HpySE526I	ACGT	4 cut(s)	37, 396, 766, 841
Hsp92I	GRCGYC	1 cut(s)	396
Hsp92II	CATG	4 cut(s)	288, 815, 1003, 1014
HspAI	GCGC	1 cut(s)	179
Kzo9I	GATC	5 cut(s)	337, 680, 739, 928, 1036
LguI	GCTCTTC	1 cut(s)	431
LmnI	GCTCC	3 cut(s)	63, 269, 373
Lsp1109I	GCAGC	2 cut(s)	604, 608
LweI	GCATC	2 cut(s)	31, 644
MaeII	ACGT	4 cut(s)	37, 396, 766, 841
MaeIII	GTNAC	3 cut(s)	17, 886, 1110
MalI	GATC	5 cut(s)	339, 682, 741, 930, 1038
MboI	GATC	5 cut(s)	337, 680, 739, 928, 1036
MflI	RGATCY	2 cut(s)	680, 739
MhlI	GDGCHC	2 cut(s)	162, 1087
MluCI	AATT	3 cut(s)	230, 268, 690
MluI	ACGCGT	1 cut(s)	21
MlyI	GAGTC	1 cut(s)	409
MmeI	TCCRAC	3 cut(s)	639, 667, 934
MroXI	GAANNNNTTC	1 cut(s)	116
MseI	TTAA	1 cut(s)	641
MslI	CAYNNNNRTG	1 cut(s)	1015
MspI	CCGG	1 cut(s)	333
MspR9I	CCNGG	2 cut(s)	77, 648
MvaI	CCWGG	2 cut(s)	77, 648
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	5 cut(s)	72, 294, 467, 502, 511
NdeII	GATC	5 cut(s)	337, 680, 739, 928, 1036
NlaIII	CATG	4 cut(s)	288, 815, 1003, 1014
NlaIV	GGNNCC	3 cut(s)	741, 1075, 1085
NmeAIII	GCCGAG	4 cut(s)	167, 216, 731, 923
NmuCI	GTSAC	2 cut(s)	17, 1110
NspI	RCATGY	2 cut(s)	815, 1003
PaqCI	CACCTGC	1 cut(s)	611
PceI	AGGCCT	2 cut(s)	461, 646
PciSI	GCTCTTC	1 cut(s)	431
PcsI	WCGNNNNNNNCGW	1 cut(s)	393
PdmI	GAANNNNTTC	1 cut(s)	116
PfeI	GAWTC	1 cut(s)	1007
PkrI	GCNGC	2 cut(s)	598, 619
Ple19I	CGATCG	2 cut(s)	340, 1039
PleI	GAGTC	1 cut(s)	409
PpsI	GAGTC	1 cut(s)	409
Psp124BI	GAGCTC	1 cut(s)	162
Psp6I	CCWGG	2 cut(s)	75, 646
PspGI	CCWGG	2 cut(s)	75, 646
PspN4I	GGNNCC	3 cut(s)	741, 1075, 1085
PspOMI	GGGCCC	1 cut(s)	1083
PspPI	GGNCC	7 cut(s)	73, 89, 101, 993, 1073, 1083, 1084
PstI	CTGCAG	2 cut(s)	615, 622
PsuI	RGATCY	2 cut(s)	680, 739
PvuI	CGATCG	2 cut(s)	340, 1039
RsaI	GTAC	6 cut(s)	380, 445, 567, 668, 676, 921
RsaNI	GTAC	6 cut(s)	379, 444, 566, 667, 675, 920
RseI	CAYNNNNRTG	1 cut(s)	1015
SacI	GAGCTC	1 cut(s)	162
SapI	GCTCTTC	1 cut(s)	431
SaqAI	TTAA	1 cut(s)	641
SatI	GCNGC	2 cut(s)	597, 618
Sau3AI	GATC	5 cut(s)	337, 680, 739, 928, 1036
Sau96I	GGNCC	7 cut(s)	73, 89, 101, 993, 1073, 1083, 1084
SbfI	CCTGCAGG	1 cut(s)	615
ScaI	AGTACT	2 cut(s)	445, 921
SchI	GAGTC	1 cut(s)	409
ScrFI	CCNGG	2 cut(s)	77, 648
SdaI	CCTGCAGG	1 cut(s)	615
SduI	GDGCHC	2 cut(s)	162, 1087
SfaNI	GCATC	2 cut(s)	31, 644
SfcI	CTRYAG	4 cut(s)	452, 611, 618, 1136
SinI	GGWCC	3 cut(s)	101, 993, 1073
SmiMI	CAYNNNNRTG	1 cut(s)	1015
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse8387I	CCTGCAGG	1 cut(s)	615
Sse9I	AATT	3 cut(s)	230, 268, 690
SseBI	AGGCCT	2 cut(s)	461, 646
SsiI	CCGC	1 cut(s)	1042
SstI	GAGCTC	1 cut(s)	162
StuI	AGGCCT	2 cut(s)	461, 646
StyD4I	CCNGG	2 cut(s)	75, 646
TaaI	ACNGT	4 cut(s)	214, 366, 671, 1137
TaiI	ACGT	4 cut(s)	40, 399, 769, 844
TaqI	TCGA	4 cut(s)	156, 340, 387, 529
TaqII	GACCGA	1 cut(s)	1010
TasI	AATT	3 cut(s)	230, 268, 690
TatI	WGTACW	3 cut(s)	443, 666, 919
TfiI	GAWTC	1 cut(s)	1007
Tru1I	TTAA	1 cut(s)	641
Tru9I	TTAA	1 cut(s)	641
TscAI	CASTG	2 cut(s)	217, 676
TseFI	GTSAC	2 cut(s)	17, 1110
TseI	GCWGC	2 cut(s)	596, 617
Tsp45I	GTSAC	2 cut(s)	17, 1110
TspDTI	ATGAA	5 cut(s)	174, 262, 551, 823, 999
TspGWI	ACGGA	4 cut(s)	195, 242, 732, 885
TspRI	CASTG	2 cut(s)	217, 676
VpaK11BI	GGWCC	3 cut(s)	101, 993, 1073
XapI	RAATTY	1 cut(s)	230
XceI	RCATGY	2 cut(s)	815, 1003
XcmI	CCANNNNNNNNNTGG	1 cut(s)	777
XmiI	GTMKAC	2 cut(s)	191, 899
XmnI	GAANNNNTTC	1 cut(s)	116
ZraI	GACGTC	1 cut(s)	397
ZrmI	AGTACT	2 cut(s)	445, 921

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.