Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013280.1

Orthogroup ID

OG0009381

Physical Location & Seq

Genomic Coordinates Reverse (-)

1260 .. 4414

Gene Structure 3155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013280.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

atggagggttgcgagagtgacgcgtggcgagtggaacgtgatgccaagtgttcttgggataggagctacttgggcctggatgtgaatgggcctgagtatggtccattggtgaagattttcctcctttacttggctacttgccgagagcttgaggtggagctcaggcaagtagcaatggcgcttctatctccgttcactgtgaacgtaaccacggaattcctcggctcatcttcaacctctcttcctcgcttcaatttcatctccagaccatgcaccaatcgccgaccttcacctctcatcgtcctttcctcaaagtccggcgatcgagcttggaacgaggccaagcgacagttgatggagcagtacggcttcgaccccgacgtcgccttgactgagccgactcggaagggaaagaagaagaagagcagtactgagctacaggaggcctcacaggctgagcctaagcccaagagaactacgcataagttgcttcaggtgcttggaggaaaggctcgaagaatgaagttgctgtctccaaagggtatggatgtacgaccaatgatggaggtcgtgaaaggtgcagcctttgatatcctgcaggctgcaggtggctgtcctgcatcgttaaggcctggccgttggttggacttgtacagtggtactggatctgttggaattgaagctattagccgaggatgttctgaggtgcattttgttgagatggatccatgggtggtttcagaggttctacatccaaacttggaatggactggatttcttgatgtttcagttatacatgctgtgcgtgttgaaaagttcatagaacgtgcagagaaacttgctggtaaagaaccatttgattacattagtgttacccctccgtatacacaagttgactatgcagtactgatggatcaaatatcaaactcggcattagttggagaaaatacctttatagtggttgagtatgcaacaaggaccgacatgcttgattcatgtggatgtcttctgaagataaccgatcggcggtttggcaggacacacttggctatttatggacccaagtgggcccagaagaagaagaagttagaaaagtcactacggggagtagcagtagaactgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cons_hypoth95

Protein Analysis

374

Amino Acids

41.84

Weight (kDa)

8.78

Isoelectric Point (pI)

40.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28460 AT3G28460 AT3G28460
fragaria_vesca	FvH4_6g49670 FvH4_6g49670
malus_domestica	MD09G1042700.v1.1 MD17G1044200.v1.1
prunus_persica	Prupe.3G275100_v2.0.a1 Prupe.3G275100_v2.0.a1 Prupe.3G275100_v2.0.a1
pyrus_communis	pycom111g03330
rosa_chinensis	RchiOBHm_Chr2g0169691
rosa_laevigata	RLG00000021895
rosa_multiflora	Rmu_sc0013280.1_g000001 Rmu_sc0026371.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081880
rosa_rugosa	Rorug02G0542200
rosa_samantha	Rh2AG614500 Rh2BG626800 Rh2CG596200 Rh2DG637600
rosa_wichuraiana	Rw2G050940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	596
AasI	GACNNNNNNGTC	1 cut(s)	380
AatII	GACGTC	1 cut(s)	384
Acc36I	ACCTGC	1 cut(s)	596
AccI	GTMKAC	1 cut(s)	884
AccII	CGCG	1 cut(s)	23
AciI	CCGC	1 cut(s)	1027
AclWI	GGATC	4 cut(s)	673, 719, 732, 921
AcoI	YGGCCR	1 cut(s)	634
AcsI	RAATTY	1 cut(s)	215
AcuI	CTGAAG	2 cut(s)	476, 1031
AcyI	GRCGYC	1 cut(s)	381
AfaI	GTAC	6 cut(s)	365, 430, 552, 653, 661, 906
AfiI	CCNNNNNNNGG	4 cut(s)	98, 130, 643, 1026
AflIII	ACRYGT	1 cut(s)	21
AgsI	TTSAA	4 cut(s)	234, 253, 680, 812
AjnI	CCWGG	2 cut(s)	75, 631
AluBI	AGCT	6 cut(s)	66, 148, 160, 329, 436, 683
AluI	AGCT	6 cut(s)	66, 148, 160, 329, 436, 683
Alw21I	GWGCWC	1 cut(s)	162
Alw26I	GTCTC	1 cut(s)	537
AlwI	GGATC	4 cut(s)	673, 719, 732, 921
AoxI	GGCC	7 cut(s)	73, 89, 339, 444, 629, 634, 1068
ApaI	GGGCCC	1 cut(s)	1072
ApeKI	GCWGC	2 cut(s)	581, 602
ApoI	RAATTY	1 cut(s)	215
Asp700I	GAANNNNTTC	1 cut(s)	116
AspLEI	GCGC	1 cut(s)	181
AspS9I	GGNCC	7 cut(s)	73, 89, 101, 978, 1058, 1068, 1069
AsuHPI	GGTGA	2 cut(s)	121, 282
AvaII	GGWCC	3 cut(s)	101, 978, 1058
BaeGI	GKGCMC	1 cut(s)	1072
BamHI	GGATCC	1 cut(s)	724
BanII	GRGCYC	2 cut(s)	162, 1072
BbsI	GAAGAC	1 cut(s)	998
Bbv12I	GWGCWC	1 cut(s)	162
BbvI	GCAGC	2 cut(s)	589, 593
BccI	CCATC	4 cut(s)	349, 556, 715, 904
BceAI	ACGGC	2 cut(s)	382, 621
BciT130I	CCWGG	2 cut(s)	77, 633
BcoDI	GTCTC	1 cut(s)	537
BfmI	CTRYAG	4 cut(s)	437, 596, 603, 1121
BfoI	RGCGCY	1 cut(s)	182
BfuAI	ACCTGC	1 cut(s)	596
BglI	GCCNNNNNGGC	1 cut(s)	452
BisI	GCNGC	2 cut(s)	582, 603
BlpI	GCTNAGC	1 cut(s)	456
BlsI	GCNGC	2 cut(s)	583, 604
BmcAI	AGTACT	2 cut(s)	430, 906
Bme1390I	CCNGG	2 cut(s)	77, 633
Bme18I	GGWCC	3 cut(s)	101, 978, 1058
BmgT120I	GGNCC	7 cut(s)	73, 89, 101, 978, 1058, 1068, 1069
BmiI	GGNNCC	3 cut(s)	726, 1060, 1070
BmrFI	CCNGG	2 cut(s)	77, 633
BmsI	GCATC	2 cut(s)	31, 629
BpiI	GAAGAC	1 cut(s)	998
BpmI	CTGGAG	1 cut(s)	247
Bpu10I	CCTNAGC	2 cut(s)	161, 462
Bpu1102I	GCTNAGC	1 cut(s)	456
BpuEI	CTTGAG	1 cut(s)	170
BsaHI	GRCGYC	1 cut(s)	381
BsaJI	CCNNGG	4 cut(s)	210, 220, 691, 728
BsaXI	ACNNNNNCTCC	1 cut(s)	1098
Bsc4I	CCNNNNNNNGG	4 cut(s)	98, 130, 643, 1026
Bse1I	ACTGG	2 cut(s)	667, 775
Bse3DI	GCAATG	1 cut(s)	180
BseBI	CCWGG	2 cut(s)	77, 633
BseDI	CCNNGG	4 cut(s)	210, 220, 691, 728
BseGI	GGATG	5 cut(s)	85, 553, 701, 751, 1007
BseLI	CCNNNNNNNGG	4 cut(s)	98, 130, 643, 1026
BseMI	GCAATG	1 cut(s)	180
BseMII	CTCAG	6 cut(s)	84, 175, 384, 423, 447, 693
BseNI	ACTGG	2 cut(s)	667, 775
BseSI	GKGCMC	1 cut(s)	1072
BseXI	GCAGC	2 cut(s)	589, 593
BsgI	GTGCAG	2 cut(s)	600, 849
Bsh1236I	CGCG	1 cut(s)	23
Bsh1285I	CGRYCG	2 cut(s)	325, 1024
BshFI	GGCC	7 cut(s)	75, 91, 341, 446, 631, 636, 1070
BsiEI	CGRYCG	2 cut(s)	325, 1024
BsiHKAI	GWGCWC	1 cut(s)	162
BsiSI	CCGG	1 cut(s)	318
BslI	CCNNNNNNNGG	4 cut(s)	98, 130, 643, 1026
BsmAI	GTCTC	1 cut(s)	537
BsnI	GGCC	7 cut(s)	75, 91, 341, 446, 631, 636, 1070
Bsp120I	GGGCCC	1 cut(s)	1068
Bsp1286I	GDGCHC	2 cut(s)	162, 1072
Bsp1407I	TGTACA	1 cut(s)	651
Bsp143I	GATC	5 cut(s)	322, 665, 724, 913, 1021
Bsp1720I	GCTNAGC	1 cut(s)	456
Bsp19I	CCATGG	1 cut(s)	728
BspACI	CCGC	1 cut(s)	1027
BspANI	GGCC	7 cut(s)	75, 91, 341, 446, 631, 636, 1070
BspCNI	CTCAG	6 cut(s)	85, 174, 385, 424, 448, 694
BspFNI	CGCG	1 cut(s)	23
BspLI	GGNNCC	3 cut(s)	726, 1060, 1070
BspMAI	CTGCAG	2 cut(s)	600, 607
BspMI	ACCTGC	1 cut(s)	596
BspPI	GGATC	4 cut(s)	673, 719, 732, 921
BspQI	GCTCTTC	1 cut(s)	416
BsrDI	GCAATG	1 cut(s)	180
BsrGI	TGTACA	1 cut(s)	651
BsrI	ACTGG	2 cut(s)	667, 775
BssECI	CCNNGG	4 cut(s)	210, 220, 691, 728
BssMI	GATC	5 cut(s)	322, 665, 724, 913, 1021
BssNAI	GTATAC	1 cut(s)	885
BssNI	GRCGYC	1 cut(s)	381
BssT1I	CCWWGG	1 cut(s)	728
Bst1107I	GTATAC	1 cut(s)	885
Bst2UI	CCWGG	2 cut(s)	77, 633
Bst4CI	ACNGT	4 cut(s)	199, 351, 656, 1122
Bst6I	CTCTTC	2 cut(s)	246, 416
BstACI	GRCGYC	1 cut(s)	381
BstAPI	GCANNNNNTGC	1 cut(s)	487
BstAUI	TGTACA	1 cut(s)	651
BstC8I	GCNNGC	1 cut(s)	600
BstDEI	CTNAG	7 cut(s)	93, 161, 393, 432, 456, 462, 702
BstDSI	CCRYGG	2 cut(s)	210, 728
BstF5I	GGATG	5 cut(s)	85, 553, 701, 751, 1007
BstFNI	CGCG	1 cut(s)	23
BstH2I	RGCGCY	1 cut(s)	182
BstHHI	GCGC	1 cut(s)	181
BstKTI	GATC	5 cut(s)	325, 668, 727, 916, 1024
BstMAI	GTCTC	1 cut(s)	537
BstMBI	GATC	5 cut(s)	322, 665, 724, 913, 1021
BstMCI	CGRYCG	2 cut(s)	325, 1024
BstMWI	GCNNNNNNNGC	5 cut(s)	72, 279, 452, 487, 496
BstNI	CCWGG	2 cut(s)	77, 633
BstNSI	RCATGY	2 cut(s)	800, 988
BstSCI	CCNGG	2 cut(s)	75, 631
BstSFI	CTRYAG	4 cut(s)	437, 596, 603, 1121
BstSLI	GKGCMC	1 cut(s)	1072
BstUI	CGCG	1 cut(s)	23
BstV1I	GCAGC	2 cut(s)	589, 593
BstV2I	GAAGAC	1 cut(s)	998
BstX2I	RGATCY	2 cut(s)	665, 724
BstYI	RGATCY	2 cut(s)	665, 724
BstZ17I	GTATAC	1 cut(s)	885
BsuRI	GGCC	7 cut(s)	75, 91, 341, 446, 631, 636, 1070
BtgI	CCRYGG	2 cut(s)	210, 728
BtsCI	GGATG	5 cut(s)	85, 553, 701, 751, 1007
BtsIMutI	CAGTG	2 cut(s)	195, 661
BveI	ACCTGC	1 cut(s)	596
Cac8I	GCNNGC	1 cut(s)	600
CfoI	GCGC	1 cut(s)	181
Cfr13I	GGNCC	7 cut(s)	73, 89, 101, 978, 1058, 1068, 1069
CseI	GACGC	1 cut(s)	29
Csp6I	GTAC	6 cut(s)	364, 429, 551, 652, 660, 905
CviAII	CATG	5 cut(s)	270, 729, 797, 985, 996
CviQI	GTAC	6 cut(s)	364, 429, 551, 652, 660, 905
DdeI	CTNAG	7 cut(s)	93, 161, 393, 432, 456, 462, 702
DpnI	GATC	5 cut(s)	324, 667, 726, 915, 1023
DpnII	GATC	5 cut(s)	322, 665, 724, 913, 1021
DrdI	GACNNNNNNGTC	1 cut(s)	380
DseDI	GACNNNNNNGTC	1 cut(s)	380
EaeI	YGGCCR	1 cut(s)	634
Eam1104I	CTCTTC	2 cut(s)	246, 416
EarI	CTCTTC	2 cut(s)	246, 416
Ecl136II	GAGCTC	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	728
Eco147I	AGGCCT	2 cut(s)	446, 631
Eco24I	GRGCYC	2 cut(s)	162, 1072
Eco32I	GATATC	1 cut(s)	592
Eco47I	GGWCC	3 cut(s)	101, 978, 1058
Eco53kI	GAGCTC	1 cut(s)	160
Eco57I	CTGAAG	2 cut(s)	476, 1031
EcoICRI	GAGCTC	1 cut(s)	160
EcoRI	GAATTC	1 cut(s)	215
EcoRII	CCWGG	2 cut(s)	75, 631
EcoRV	GATATC	1 cut(s)	592
EcoT14I	CCWWGG	1 cut(s)	728
EcoT38I	GRGCYC	2 cut(s)	162, 1072
ErhI	CCWWGG	1 cut(s)	728
FaeI	CATG	5 cut(s)	273, 732, 800, 988, 999
FatI	CATG	5 cut(s)	269, 728, 796, 984, 995
FblI	GTMKAC	1 cut(s)	884
Fnu4HI	GCNGC	2 cut(s)	582, 603
FokI	GGATG	5 cut(s)	92, 560, 708, 738, 1014
FriOI	GRGCYC	2 cut(s)	162, 1072
Fsp4HI	GCNGC	2 cut(s)	582, 603
GlaI	GCGC	1 cut(s)	180
GluI	GCNGC	2 cut(s)	582, 603
GsuI	CTGGAG	1 cut(s)	247
HaeII	RGCGCY	1 cut(s)	182
HaeIII	GGCC	7 cut(s)	75, 91, 341, 446, 631, 636, 1070
HapII	CCGG	1 cut(s)	318
HgaI	GACGC	1 cut(s)	29
HhaI	GCGC	1 cut(s)	181
Hin1I	GRCGYC	1 cut(s)	381
Hin1II	CATG	5 cut(s)	273, 732, 800, 988, 999
Hin6I	GCGC	1 cut(s)	179
HinP1I	GCGC	1 cut(s)	179
HincII	GTYRAC	1 cut(s)	895
HindII	GTYRAC	1 cut(s)	895
HinfI	GANTC	2 cut(s)	400, 992
HpaII	CCGG	1 cut(s)	318
HphI	GGTGA	2 cut(s)	121, 282
Hpy166II	GTNNAC	4 cut(s)	195, 202, 885, 895
Hpy188I	TCNGA	4 cut(s)	405, 703, 742, 1011
Hpy188III	TCNNGA	3 cut(s)	264, 571, 779
Hpy8I	GTNNAC	4 cut(s)	195, 202, 885, 895
Hpy99I	CGWCG	2 cut(s)	383, 386
HpyAV	CCTTC	2 cut(s)	297, 400
HpyCH4III	ACNGT	4 cut(s)	199, 351, 656, 1122
HpyCH4IV	ACGT	4 cut(s)	37, 204, 381, 826
HpyCH4V	TGCA	9 cut(s)	273, 581, 598, 605, 620, 709, 830, 902, 971
HpyF10VI	GCNNNNNNNGC	5 cut(s)	72, 279, 452, 487, 496
HpyF3I	CTNAG	7 cut(s)	93, 161, 393, 432, 456, 462, 702
HpySE526I	ACGT	4 cut(s)	37, 204, 381, 826
Hsp92I	GRCGYC	1 cut(s)	381
Hsp92II	CATG	5 cut(s)	273, 732, 800, 988, 999
HspAI	GCGC	1 cut(s)	179
Kzo9I	GATC	5 cut(s)	322, 665, 724, 913, 1021
LguI	GCTCTTC	1 cut(s)	416
LmnI	GCTCC	3 cut(s)	63, 157, 358
Lsp1109I	GCAGC	2 cut(s)	589, 593
LweI	GCATC	2 cut(s)	31, 629
MaeII	ACGT	4 cut(s)	37, 204, 381, 826
MaeIII	GTNAC	4 cut(s)	17, 205, 871, 1095
MalI	GATC	5 cut(s)	324, 667, 726, 915, 1023
MboI	GATC	5 cut(s)	322, 665, 724, 913, 1021
MflI	RGATCY	2 cut(s)	665, 724
MhlI	GDGCHC	2 cut(s)	162, 1072
MluCI	AATT	3 cut(s)	215, 253, 675
MluI	ACGCGT	1 cut(s)	21
MlyI	GAGTC	1 cut(s)	394
MmeI	TCCRAC	3 cut(s)	624, 652, 919
MroXI	GAANNNNTTC	1 cut(s)	116
MseI	TTAA	1 cut(s)	626
MslI	CAYNNNNRTG	1 cut(s)	1000
MspI	CCGG	1 cut(s)	318
MspR9I	CCNGG	2 cut(s)	77, 633
MvaI	CCWGG	2 cut(s)	77, 633
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	5 cut(s)	72, 279, 452, 487, 496
NcoI	CCATGG	1 cut(s)	728
NdeII	GATC	5 cut(s)	322, 665, 724, 913, 1021
NlaIII	CATG	5 cut(s)	273, 732, 800, 988, 999
NlaIV	GGNNCC	3 cut(s)	726, 1060, 1070
NmeAIII	GCCGAG	4 cut(s)	167, 201, 716, 908
NmuCI	GTSAC	2 cut(s)	17, 1095
NspI	RCATGY	2 cut(s)	800, 988
PaqCI	CACCTGC	1 cut(s)	596
PceI	AGGCCT	2 cut(s)	446, 631
PciSI	GCTCTTC	1 cut(s)	416
PcsI	WCGNNNNNNNCGW	1 cut(s)	378
PdmI	GAANNNNTTC	1 cut(s)	116
PfeI	GAWTC	1 cut(s)	992
PkrI	GCNGC	2 cut(s)	583, 604
Ple19I	CGATCG	2 cut(s)	325, 1024
PleI	GAGTC	1 cut(s)	394
PpsI	GAGTC	1 cut(s)	394
Psp124BI	GAGCTC	1 cut(s)	162
Psp6I	CCWGG	2 cut(s)	75, 631
PspGI	CCWGG	2 cut(s)	75, 631
PspN4I	GGNNCC	3 cut(s)	726, 1060, 1070
PspOMI	GGGCCC	1 cut(s)	1068
PspPI	GGNCC	7 cut(s)	73, 89, 101, 978, 1058, 1068, 1069
PstI	CTGCAG	2 cut(s)	600, 607
PsuI	RGATCY	2 cut(s)	665, 724
PvuI	CGATCG	2 cut(s)	325, 1024
RsaI	GTAC	6 cut(s)	365, 430, 552, 653, 661, 906
RsaNI	GTAC	6 cut(s)	364, 429, 551, 652, 660, 905
RseI	CAYNNNNRTG	1 cut(s)	1000
SacI	GAGCTC	1 cut(s)	162
SapI	GCTCTTC	1 cut(s)	416
SaqAI	TTAA	1 cut(s)	626
SatI	GCNGC	2 cut(s)	582, 603
Sau3AI	GATC	5 cut(s)	322, 665, 724, 913, 1021
Sau96I	GGNCC	7 cut(s)	73, 89, 101, 978, 1058, 1068, 1069
SbfI	CCTGCAGG	1 cut(s)	600
ScaI	AGTACT	2 cut(s)	430, 906
SchI	GAGTC	1 cut(s)	394
ScrFI	CCNGG	2 cut(s)	77, 633
SdaI	CCTGCAGG	1 cut(s)	600
SduI	GDGCHC	2 cut(s)	162, 1072
SfaNI	GCATC	2 cut(s)	31, 629
SfcI	CTRYAG	4 cut(s)	437, 596, 603, 1121
SinI	GGWCC	3 cut(s)	101, 978, 1058
SmiMI	CAYNNNNRTG	1 cut(s)	1000
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse8387I	CCTGCAGG	1 cut(s)	600
Sse9I	AATT	3 cut(s)	215, 253, 675
SseBI	AGGCCT	2 cut(s)	446, 631
SsiI	CCGC	1 cut(s)	1027
SstI	GAGCTC	1 cut(s)	162
StuI	AGGCCT	2 cut(s)	446, 631
StyD4I	CCNGG	2 cut(s)	75, 631
StyI	CCWWGG	1 cut(s)	728
TaaI	ACNGT	4 cut(s)	199, 351, 656, 1122
TaiI	ACGT	4 cut(s)	40, 207, 384, 829
TaqI	TCGA	3 cut(s)	325, 372, 514
TaqII	GACCGA	1 cut(s)	995
TasI	AATT	3 cut(s)	215, 253, 675
TatI	WGTACW	3 cut(s)	428, 651, 904
TfiI	GAWTC	1 cut(s)	992
Tru1I	TTAA	1 cut(s)	626
Tru9I	TTAA	1 cut(s)	626
TscAI	CASTG	2 cut(s)	202, 661
TseFI	GTSAC	2 cut(s)	17, 1095
TseI	GCWGC	2 cut(s)	581, 602
Tsp45I	GTSAC	2 cut(s)	17, 1095
TspDTI	ATGAA	4 cut(s)	247, 536, 808, 984
TspGWI	ACGGA	3 cut(s)	180, 227, 870
TspRI	CASTG	2 cut(s)	202, 661
VpaK11BI	GGWCC	3 cut(s)	101, 978, 1058
XapI	RAATTY	1 cut(s)	215
XceI	RCATGY	2 cut(s)	800, 988
XcmI	CCANNNNNNNNNTGG	1 cut(s)	762
XmiI	GTMKAC	1 cut(s)	884
XmnI	GAANNNNTTC	1 cut(s)	116
ZraI	GACGTC	1 cut(s)	382
ZrmI	AGTACT	2 cut(s)	430, 906

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.