Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004409

Physical Location & Seq

Genomic Coordinates Reverse (-)

25618464 .. 25621566

Gene Structure 3103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G280400.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGTCACAAGGCTATGCGATCGAGCTCTACTTCGATCCAGCCCTCGAAAACCAGGTCTTGAAGGCTTGGAATGTGCTCGCTCGCCGTCAGATTAGTACCCAACTCATTGAAATCGAATCACGCCCCCACATCACCCTCTTCTCCAGCCCCTTCATTGAACCAGCGAAGCTCGAAAACGTAATCAAAGCCTTCGCTTCGAAGCAAGAACCTTTGGCGTTGTCCTTCTCCTCAATTGGGAGCCTTCCACATGACAACAATGTCCTGTTTCTGTCACCAACTCCTTCAGTTTCGTTGCTTCAGTTTCAGTCCCAATTGTGCGAGGCAGTGAAGAGAGAAGGCGTTGAAATTGGGGAGGAGTATCGCACAGATTCTTGGGTTCCTTATTGTGCTGTTGCTCAAGAAGTGCCAAAGACTCGGATGGCGGAAGCGTTTTGCGTGTTACGGGACTTGAAGTTGCCGGTTGCTGGGTATGCCATGGATATTGGGTTGGTGGAGTTTTCGCCTGTTCGTGAGTTATTCTCGTTTGTGCTAGGTTTTGGCTGTATTTTTTTTAGTGGTGTAGCCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2_5_RNA_ligase2

Protein Analysis

190

Amino Acids

21.07

Weight (kDa)

4.98

Isoelectric Point (pI)

66.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28140 AT5G40190
fragaria_vesca	FvH4_6g50340 FvH4_6g50340
malus_domestica	MD09G1037200.v1.1 MD17G1038600.v1.1
prunus_persica	Prupe.3G280400_v2.0.a1 Prupe.3G280400_v2.0.a1 Prupe.3G280400_v2.0.a1 Prupe.3G280400_v2.0.a1 Prupe.3G280400_v2.0.a1 Prupe.3G280400_v2.0.a1 Prupe.3G280400_v2.0.a1 Prupe.3G280400_v2.0.a1 Prupe.3G280400_v2.0.a1 Prupe.3G280400_v2.0.a1 Prupe.3G280400_v2.0.a1 Prupe.3G280400_v2.0.a1
pyrus_communis	pycom17g03480
rosa_chinensis	RchiOBHm_Chr2g0170641
rosa_laevigata	RLG00000021972
rosa_multiflora	Rmu_sc0003787.1_g000012 Rmu_sc0003787.1_g000023 Rmu_sc0015334.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081150
rosa_rugosa	Rorug02G0550100
rosa_samantha	Rh2AG622900 Rh2AG623100 Rh2BG633600 Rh2CG602800 Rh2DG646400
rosa_wichuraiana	Rw2G051600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	257
AciI	CCGC	1 cut(s)	422
AclWI	GGATC	1 cut(s)	29
AcuI	CTGAAG	2 cut(s)	267, 281
AfaI	GTAC	1 cut(s)	97
AfiI	CCNNNNNNNGG	2 cut(s)	234, 464
AgsI	TTSAA	5 cut(s)	61, 110, 158, 344, 451
AjnI	CCWGG	1 cut(s)	51
AluBI	AGCT	2 cut(s)	25, 169
AluI	AGCT	2 cut(s)	25, 169
Alw21I	GWGCWC	2 cut(s)	27, 78
AlwI	GGATC	1 cut(s)	29
ArsI	GACNNNNNNTTYG	2 cut(s)	39, 71
AsuHPI	GGTGA	2 cut(s)	124, 264
AsuII	TTCGAA	1 cut(s)	197
BanII	GRGCYC	1 cut(s)	27
Bbv12I	GWGCWC	2 cut(s)	27, 78
BccI	CCATC	1 cut(s)	412
BceAI	ACGGC	1 cut(s)	69
BciT130I	CCWGG	1 cut(s)	53
BfaI	CTAG	1 cut(s)	530
Bme1390I	CCNGG	1 cut(s)	53
BmiI	GGNNCC	2 cut(s)	239, 378
BmrFI	CCNGG	1 cut(s)	53
BplI	GAGNNNNNCTC	2 cut(s)	503, 535
BpmI	CTGGAG	1 cut(s)	127
Bpu14I	TTCGAA	1 cut(s)	197
BpuEI	CTTGAG	1 cut(s)	381
BsaJI	CCNNGG	1 cut(s)	474
Bsc4I	CCNNNNNNNGG	2 cut(s)	234, 464
Bse118I	RCCGGY	1 cut(s)	457
BseBI	CCWGG	1 cut(s)	53
BseDI	CCNNGG	1 cut(s)	474
BseGI	GGATG	1 cut(s)	423
BseLI	CCNNNNNNNGG	2 cut(s)	234, 464
BseRI	GAGGAG	2 cut(s)	217, 368
BseYI	CCCAGC	1 cut(s)	464
Bsh1285I	CGRYCG	1 cut(s)	21
BsiEI	CGRYCG	1 cut(s)	21
BsiHKAI	GWGCWC	2 cut(s)	27, 78
BsiSI	CCGG	1 cut(s)	458
BslFI	GGGAC	2 cut(s)	292, 458
BslI	CCNNNNNNNGG	2 cut(s)	234, 464
BsmFI	GGGAC	2 cut(s)	292, 458
Bsp119I	TTCGAA	1 cut(s)	197
Bsp1286I	GDGCHC	2 cut(s)	27, 78
Bsp143I	GATC	2 cut(s)	18, 34
Bsp19I	CCATGG	1 cut(s)	474
BspACI	CCGC	1 cut(s)	422
BspLI	GGNNCC	2 cut(s)	239, 378
BspPI	GGATC	1 cut(s)	29
BspT104I	TTCGAA	1 cut(s)	197
BsrFI	RCCGGY	1 cut(s)	457
BssAI	RCCGGY	1 cut(s)	457
BssECI	CCNNGG	1 cut(s)	474
BssMI	GATC	2 cut(s)	18, 34
BssT1I	CCWWGG	1 cut(s)	474
Bst2UI	CCWGG	1 cut(s)	53
Bst6I	CTCTTC	2 cut(s)	143, 323
BstBI	TTCGAA	1 cut(s)	197
BstC8I	GCNNGC	2 cut(s)	78, 82
BstDSI	CCRYGG	1 cut(s)	474
BstF5I	GGATG	1 cut(s)	423
BstKTI	GATC	2 cut(s)	21, 37
BstMBI	GATC	2 cut(s)	18, 34
BstMCI	CGRYCG	1 cut(s)	21
BstMWI	GCNNNNNNNGC	1 cut(s)	470
BstNI	CCWGG	1 cut(s)	53
BstSCI	CCNGG	1 cut(s)	51
BtgI	CCRYGG	1 cut(s)	474
BtsCI	GGATG	1 cut(s)	423
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	1 cut(s)	330
Cac8I	GCNNGC	2 cut(s)	78, 82
Cfr10I	RCCGGY	1 cut(s)	457
CsiI	ACCWGGT	1 cut(s)	51
Csp6I	GTAC	1 cut(s)	96
CviAII	CATG	2 cut(s)	248, 475
CviQI	GTAC	1 cut(s)	96
DpnI	GATC	2 cut(s)	20, 36
DpnII	GATC	2 cut(s)	18, 34
DrdI	GACNNNNNNGTC	1 cut(s)	257
DseDI	GACNNNNNNGTC	1 cut(s)	257
Eam1104I	CTCTTC	2 cut(s)	143, 323
EarI	CTCTTC	2 cut(s)	143, 323
EciI	GGCGGA	1 cut(s)	437
Ecl136II	GAGCTC	1 cut(s)	25
Eco130I	CCWWGG	1 cut(s)	474
Eco24I	GRGCYC	1 cut(s)	27
Eco53kI	GAGCTC	1 cut(s)	25
Eco57I	CTGAAG	2 cut(s)	267, 281
EcoICRI	GAGCTC	1 cut(s)	25
EcoRII	CCWGG	1 cut(s)	51
EcoT14I	CCWWGG	1 cut(s)	474
EcoT38I	GRGCYC	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	474
FaeI	CATG	2 cut(s)	251, 478
FaiI	YATR	4 cut(s)	15, 249, 471, 476
FaqI	GGGAC	2 cut(s)	292, 458
FatI	CATG	2 cut(s)	247, 474
FokI	GGATG	1 cut(s)	430
FriOI	GRGCYC	1 cut(s)	27
FspBI	CTAG	1 cut(s)	530
GsaI	CCCAGC	1 cut(s)	468
GsuI	CTGGAG	1 cut(s)	127
HapII	CCGG	1 cut(s)	458
Hin1II	CATG	2 cut(s)	251, 478
HinfI	GANTC	3 cut(s)	116, 368, 412
HpaII	CCGG	1 cut(s)	458
HphI	GGTGA	2 cut(s)	124, 264
Hpy188I	TCNGA	2 cut(s)	90, 417
Hpy188III	TCNNGA	3 cut(s)	58, 398, 509
HpyAV	CCTTC	7 cut(s)	55, 160, 199, 232, 251, 291, 329
HpyCH4IV	ACGT	1 cut(s)	177
HpyF10VI	GCNNNNNNNGC	1 cut(s)	470
HpySE526I	ACGT	1 cut(s)	177
Hsp92II	CATG	2 cut(s)	251, 478
Kzo9I	GATC	2 cut(s)	18, 34
LmnI	GCTCC	1 cut(s)	237
LpnPI	CCDG	9 cut(s)	38, 51, 65, 157, 174, 275, 450, 471, 516
MabI	ACCWGGT	1 cut(s)	51
MaeI	CTAG	1 cut(s)	530
MaeII	ACGT	1 cut(s)	177
MaeIII	GTNAC	3 cut(s)	3, 270, 438
MalI	GATC	2 cut(s)	20, 36
MboI	GATC	2 cut(s)	18, 34
MboII	GAAGA	2 cut(s)	130, 340
MfeI	CAATTG	2 cut(s)	231, 311
MhlI	GDGCHC	2 cut(s)	27, 78
MluCI	AATT	3 cut(s)	231, 311, 345
MlyI	GAGTC	1 cut(s)	406
MnlI	CCTC	5 cut(s)	53, 146, 238, 313, 346
MspI	CCGG	1 cut(s)	458
MspR9I	CCNGG	1 cut(s)	53
MunI	CAATTG	2 cut(s)	231, 311
MvaI	CCWGG	1 cut(s)	53
MwoI	GCNNNNNNNGC	1 cut(s)	470
NcoI	CCATGG	1 cut(s)	474
NdeII	GATC	2 cut(s)	18, 34
NlaIII	CATG	2 cut(s)	251, 478
NlaIV	GGNNCC	2 cut(s)	239, 378
NmuCI	GTSAC	2 cut(s)	3, 270
NspV	TTCGAA	1 cut(s)	197
PfeI	GAWTC	2 cut(s)	116, 368
Ple19I	CGATCG	1 cut(s)	21
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
Psp124BI	GAGCTC	1 cut(s)	27
Psp6I	CCWGG	1 cut(s)	51
PspFI	CCCAGC	1 cut(s)	464
PspGI	CCWGG	1 cut(s)	51
PspN4I	GGNNCC	2 cut(s)	239, 378
PvuI	CGATCG	1 cut(s)	21
RsaI	GTAC	1 cut(s)	97
RsaNI	GTAC	1 cut(s)	96
SacI	GAGCTC	1 cut(s)	27
Sau3AI	GATC	2 cut(s)	18, 34
SchI	GAGTC	1 cut(s)	406
ScrFI	CCNGG	1 cut(s)	53
SduI	GDGCHC	2 cut(s)	27, 78
SetI	ASST	6 cut(s)	27, 57, 171, 180, 211, 535
SexAI	ACCWGGT	1 cut(s)	51
SfuI	TTCGAA	1 cut(s)	197
SmlI	CTYRAG	1 cut(s)	396
SmoI	CTYRAG	1 cut(s)	396
Sse9I	AATT	3 cut(s)	231, 311, 345
SsiI	CCGC	1 cut(s)	422
SspMI	CTAG	1 cut(s)	530
SstI	GAGCTC	1 cut(s)	27
StyD4I	CCNGG	1 cut(s)	51
StyI	CCWWGG	1 cut(s)	474
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	6 cut(s)	21, 33, 45, 114, 171, 197
TasI	AATT	3 cut(s)	231, 311, 345
TfiI	GAWTC	2 cut(s)	116, 368
TscAI	CASTG	1 cut(s)	330
TseFI	GTSAC	2 cut(s)	3, 270
Tsp45I	GTSAC	2 cut(s)	3, 270
TspDTI	ATGAA	1 cut(s)	142
TspRI	CASTG	1 cut(s)	330
XspI	CTAG	1 cut(s)	530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.