Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003787.1

Orthogroup ID

OG0004409

Physical Location & Seq

Genomic Coordinates Forward (+)

111592 .. 111945

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003787.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

atgcaagagcctttggccttgtcattctcgtcaattgggagcttcccgactgataacaatgtactgtttctggcaccaactccttcggtttcgttgcttcagttccagtcccagttgtgtgaggcaatgaagaaagaaggtgtcgaaattggggaggagtatcggactgattcttggatgccttactgtgctgttgctcaagatgtgccgaagagtcggatggctgaagcgttttgcgtattgagggacttgaagttgccggttgctgggtatgctatggatattgggctggtggagttttcgccggtgagggagttgttttcttttgtgctaggtaacacagtagaagcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2_5_RNA_ligase2

Protein Analysis

117

Amino Acids

12.92

Weight (kDa)

4.39

Isoelectric Point (pI)

50.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28140 AT5G40190
fragaria_vesca	FvH4_6g50340 FvH4_6g50340
malus_domestica	MD09G1037200.v1.1 MD17G1038600.v1.1
prunus_persica	Prupe.3G280400_v2.0.a1 Prupe.3G280400_v2.0.a1 Prupe.3G280400_v2.0.a1 Prupe.3G280400_v2.0.a1 Prupe.3G280400_v2.0.a1 Prupe.3G280400_v2.0.a1 Prupe.3G280400_v2.0.a1 Prupe.3G280400_v2.0.a1 Prupe.3G280400_v2.0.a1 Prupe.3G280400_v2.0.a1 Prupe.3G280400_v2.0.a1 Prupe.3G280400_v2.0.a1
pyrus_communis	pycom17g03480
rosa_chinensis	RchiOBHm_Chr2g0170641
rosa_laevigata	RLG00000021972
rosa_multiflora	Rmu_sc0003787.1_g000012 Rmu_sc0003787.1_g000023 Rmu_sc0015334.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081150
rosa_rugosa	Rorug02G0550100
rosa_samantha	Rh2AG622900 Rh2AG623100 Rh2BG633600 Rh2CG602800 Rh2DG646400
rosa_wichuraiana	Rw2G051600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	73
AcuI	CTGAAG	2 cut(s)	83, 246
AfaI	GTAC	1 cut(s)	63
AfiI	CCNNNNNNNGG	1 cut(s)	266
AgsI	TTSAA	1 cut(s)	253
AluBI	AGCT	2 cut(s)	42, 350
AluI	AGCT	2 cut(s)	42, 350
AoxI	GGCC	1 cut(s)	15
AsuHPI	GGTGA	1 cut(s)	319
BanI	GGYRCC	1 cut(s)	73
BccI	CCATC	1 cut(s)	214
BfaI	CTAG	1 cut(s)	332
BmiI	GGNNCC	1 cut(s)	75
BmrI	ACTGGG	1 cut(s)	106
BmsI	GCATC	1 cut(s)	168
BmuI	ACTGGG	1 cut(s)	106
BpuEI	CTTGAG	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	1 cut(s)	266
Bse118I	RCCGGY	2 cut(s)	259, 304
Bse1I	ACTGG	2 cut(s)	106, 112
Bse3DI	GCAATG	1 cut(s)	132
BseGI	GGATG	2 cut(s)	183, 225
BseLI	CCNNNNNNNGG	1 cut(s)	266
BseMI	GCAATG	1 cut(s)	132
BseNI	ACTGG	2 cut(s)	106, 112
BseRI	GAGGAG	1 cut(s)	170
BseYI	CCCAGC	1 cut(s)	266
BshFI	GGCC	1 cut(s)	17
BshNI	GGYRCC	1 cut(s)	73
BsiSI	CCGG	2 cut(s)	260, 305
BslFI	GGGAC	2 cut(s)	94, 260
BslI	CCNNNNNNNGG	1 cut(s)	266
BsmFI	GGGAC	2 cut(s)	94, 260
BsnI	GGCC	1 cut(s)	17
BspANI	GGCC	1 cut(s)	17
BspLI	GGNNCC	1 cut(s)	75
BspT107I	GGYRCC	1 cut(s)	73
BsrDI	GCAATG	1 cut(s)	132
BsrFI	RCCGGY	2 cut(s)	259, 304
BsrI	ACTGG	2 cut(s)	106, 112
BssAI	RCCGGY	2 cut(s)	259, 304
Bst4CI	ACNGT	3 cut(s)	66, 188, 343
Bst6I	CTCTTC	1 cut(s)	206
BstF5I	GGATG	2 cut(s)	183, 225
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BsuRI	GGCC	1 cut(s)	17
BtsCI	GGATG	2 cut(s)	183, 225
Cfr10I	RCCGGY	2 cut(s)	259, 304
Csp6I	GTAC	1 cut(s)	62
CviJI	RGCY	6 cut(s)	10, 17, 42, 224, 289, 350
CviKI_1	RGCY	6 cut(s)	10, 17, 42, 224, 289, 350
CviQI	GTAC	1 cut(s)	62
Eam1104I	CTCTTC	1 cut(s)	206
EarI	CTCTTC	1 cut(s)	206
Eco57I	CTGAAG	2 cut(s)	83, 246
FaiI	YATR	2 cut(s)	273, 278
FaqI	GGGAC	2 cut(s)	94, 260
FokI	GGATG	2 cut(s)	190, 232
FspBI	CTAG	1 cut(s)	332
GsaI	CCCAGC	1 cut(s)	270
HaeIII	GGCC	1 cut(s)	17
HapII	CCGG	2 cut(s)	260, 305
HindIII	AAGCTT	1 cut(s)	348
HinfI	GANTC	2 cut(s)	170, 214
HpaII	CCGG	2 cut(s)	260, 305
HphI	GGTGA	1 cut(s)	319
Hpy188I	TCNGA	2 cut(s)	165, 219
Hpy188III	TCNNGA	2 cut(s)	46, 200
HpyAV	CCTTC	2 cut(s)	93, 131
HpyCH4III	ACNGT	3 cut(s)	66, 188, 343
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
LmnI	GCTCC	1 cut(s)	39
LpnPI	CCDG	7 cut(s)	56, 119, 125, 252, 273, 275, 318
LweI	GCATC	1 cut(s)	168
MaeI	CTAG	1 cut(s)	332
MaeIII	GTNAC	1 cut(s)	335
MboII	GAAGA	2 cut(s)	142, 223
MfeI	CAATTG	1 cut(s)	33
MluCI	AATT	2 cut(s)	33, 147
MlyI	GAGTC	1 cut(s)	223
MmeI	TCCRAC	1 cut(s)	197
MnlI	CCTC	4 cut(s)	115, 148, 237, 303
MspI	CCGG	2 cut(s)	260, 305
MunI	CAATTG	1 cut(s)	33
MwoI	GCNNNNNNNGC	1 cut(s)	272
NlaIV	GGNNCC	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	170
PleI	GAGTC	1 cut(s)	222
PpsI	GAGTC	1 cut(s)	222
PspFI	CCCAGC	1 cut(s)	266
PspN4I	GGNNCC	1 cut(s)	75
RsaI	GTAC	1 cut(s)	63
RsaNI	GTAC	1 cut(s)	62
SchI	GAGTC	1 cut(s)	223
SetI	ASST	4 cut(s)	44, 142, 337, 352
SfaNI	GCATC	1 cut(s)	168
SgrAI	CRCCGGYG	1 cut(s)	304
SmlI	CTYRAG	1 cut(s)	198
SmoI	CTYRAG	1 cut(s)	198
Sse9I	AATT	2 cut(s)	33, 147
SspMI	CTAG	1 cut(s)	332
TaaI	ACNGT	3 cut(s)	66, 188, 343
TaqI	TCGA	1 cut(s)	144
TasI	AATT	2 cut(s)	33, 147
TatI	WGTACW	1 cut(s)	61
TfiI	GAWTC	1 cut(s)	170
TspDTI	ATGAA	1 cut(s)	143
XspI	CTAG	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.