2'-5' RNA ligase superfamily
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G28140 AT5G40190 |
| fragaria_vesca | FvH4_6g50340 FvH4_6g50340 |
| malus_domestica | MD09G1037200.v1.1 MD17G1038600.v1.1 |
| prunus_persica | Prupe.3G280400_v2.0.a1 Prupe.3G280400_v2.0.a1 Prupe.3G280400_v2.0.a1 Prupe.3G280400_v2.0.a1 Prupe.3G280400_v2.0.a1 Prupe.3G280400_v2.0.a1 Prupe.3G280400_v2.0.a1 Prupe.3G280400_v2.0.a1 Prupe.3G280400_v2.0.a1 Prupe.3G280400_v2.0.a1 Prupe.3G280400_v2.0.a1 Prupe.3G280400_v2.0.a1 |
| pyrus_communis | pycom17g03480 |
| rosa_chinensis | RchiOBHm_Chr2g0170641 |
| rosa_laevigata | RLG00000021972 |
| rosa_multiflora | Rmu_sc0003787.1_g000012 Rmu_sc0003787.1_g000023 Rmu_sc0015334.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00081150 |
| rosa_rugosa | Rorug02G0550100 |
| rosa_samantha | Rh2AG622900 Rh2AG623100 Rh2BG633600 Rh2CG602800 Rh2DG646400 |
| rosa_wichuraiana | Rw2G051600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 140 |
| AcuI | CTGAAG | 1 cut(s) | 120 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 90, 140 |
| AgsI | TTSAA | 2 cut(s) | 127, 202 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 140 |
| AspS9I | GGNCC | 1 cut(s) | 260 |
| AvaII | GGWCC | 1 cut(s) | 260 |
| BaeGI | GKGCMC | 1 cut(s) | 84 |
| BbsI | GAAGAC | 1 cut(s) | 187 |
| BccI | CCATC | 1 cut(s) | 88 |
| Bme18I | GGWCC | 1 cut(s) | 260 |
| BmgT120I | GGNCC | 1 cut(s) | 260 |
| BmsI | GCATC | 2 cut(s) | 42, 238 |
| BpiI | GAAGAC | 1 cut(s) | 187 |
| BpuEI | CTTGAG | 1 cut(s) | 57 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 90, 140 |
| Bse1I | ACTGG | 1 cut(s) | 134 |
| BseGI | GGATG | 3 cut(s) | 57, 99, 229 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 90, 140 |
| BseMII | CTCAG | 1 cut(s) | 251 |
| BseNI | ACTGG | 1 cut(s) | 134 |
| BseSI | GKGCMC | 1 cut(s) | 84 |
| BseYI | CCCAGC | 2 cut(s) | 140, 178 |
| BslFI | GGGAC | 1 cut(s) | 134 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 90, 140 |
| BsmFI | GGGAC | 1 cut(s) | 134 |
| Bsp1286I | GDGCHC | 1 cut(s) | 84 |
| BspCNI | CTCAG | 1 cut(s) | 250 |
| BsrI | ACTGG | 1 cut(s) | 134 |
| Bst4CI | ACNGT | 1 cut(s) | 62 |
| BstDEI | CTNAG | 1 cut(s) | 237 |
| BstF5I | GGATG | 3 cut(s) | 57, 99, 229 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 146 |
| BstSLI | GKGCMC | 1 cut(s) | 84 |
| BstV2I | GAAGAC | 1 cut(s) | 187 |
| BtsCI | GGATG | 3 cut(s) | 57, 99, 229 |
| CaiI | CAGNNNCTG | 1 cut(s) | 140 |
| Cfr13I | GGNCC | 1 cut(s) | 260 |
| CviAII | CATG | 1 cut(s) | 251 |
| CviJI | RGCY | 3 cut(s) | 98, 163, 280 |
| CviKI_1 | RGCY | 3 cut(s) | 98, 163, 280 |
| DdeI | CTNAG | 1 cut(s) | 237 |
| Eco47I | GGWCC | 1 cut(s) | 260 |
| Eco57I | CTGAAG | 1 cut(s) | 120 |
| FaeI | CATG | 1 cut(s) | 254 |
| FaiI | YATR | 6 cut(s) | 58, 152, 190, 192, 215, 252 |
| FaqI | GGGAC | 1 cut(s) | 134 |
| FatI | CATG | 1 cut(s) | 250 |
| FauNDI | CATATG | 1 cut(s) | 190 |
| FokI | GGATG | 3 cut(s) | 64, 106, 216 |
| GsaI | CCCAGC | 2 cut(s) | 144, 182 |
| Hin1II | CATG | 1 cut(s) | 254 |
| HincII | GTYRAC | 1 cut(s) | 295 |
| HindII | GTYRAC | 1 cut(s) | 295 |
| HinfI | GANTC | 3 cut(s) | 44, 88, 241 |
| Hpy166II | GTNNAC | 1 cut(s) | 295 |
| Hpy188I | TCNGA | 3 cut(s) | 39, 93, 240 |
| Hpy188III | TCNNGA | 1 cut(s) | 74 |
| Hpy8I | GTNNAC | 1 cut(s) | 295 |
| HpyAV | CCTTC | 2 cut(s) | 5, 243 |
| HpyCH4III | ACNGT | 1 cut(s) | 62 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 146 |
| HpyF3I | CTNAG | 1 cut(s) | 237 |
| Hsp92II | CATG | 1 cut(s) | 254 |
| LpnPI | CCDG | 4 cut(s) | 126, 147, 149, 164 |
| LweI | GCATC | 2 cut(s) | 42, 238 |
| MaeIII | GTNAC | 1 cut(s) | 221 |
| MboII | GAAGA | 5 cut(s) | 16, 187, 190, 236, 239 |
| MhlI | GDGCHC | 1 cut(s) | 84 |
| MluCI | AATT | 1 cut(s) | 21 |
| MlyI | GAGTC | 1 cut(s) | 97 |
| MmeI | TCCRAC | 1 cut(s) | 71 |
| MnlI | CCTC | 2 cut(s) | 22, 111 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 146 |
| NdeI | CATATG | 1 cut(s) | 190 |
| NlaIII | CATG | 1 cut(s) | 254 |
| PfeI | GAWTC | 2 cut(s) | 44, 241 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 140 |
| PleI | GAGTC | 1 cut(s) | 96 |
| PpsI | GAGTC | 1 cut(s) | 96 |
| PspFI | CCCAGC | 2 cut(s) | 140, 178 |
| PspPI | GGNCC | 1 cut(s) | 260 |
| PstNI | CAGNNNCTG | 1 cut(s) | 140 |
| Sau96I | GGNCC | 1 cut(s) | 260 |
| SchI | GAGTC | 1 cut(s) | 97 |
| SduI | GDGCHC | 1 cut(s) | 84 |
| SetI | ASST | 1 cut(s) | 16 |
| SfaNI | GCATC | 2 cut(s) | 42, 238 |
| SinI | GGWCC | 1 cut(s) | 260 |
| SmlI | CTYRAG | 1 cut(s) | 72 |
| SmoI | CTYRAG | 1 cut(s) | 72 |
| Sse9I | AATT | 1 cut(s) | 21 |
| TaaI | ACNGT | 1 cut(s) | 62 |
| TaqI | TCGA | 1 cut(s) | 18 |
| TasI | AATT | 1 cut(s) | 21 |
| TfiI | GAWTC | 2 cut(s) | 44, 241 |
| TspDTI | ATGAA | 2 cut(s) | 17, 239 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 140 |
| VpaK11BI | GGWCC | 1 cut(s) | 260 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 91 |