2'-5' RNA ligase superfamily
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G28140 AT5G40190 |
| fragaria_vesca | FvH4_6g50340 FvH4_6g50340 |
| malus_domestica | MD09G1037200.v1.1 MD17G1038600.v1.1 |
| prunus_persica | Prupe.3G280400_v2.0.a1 Prupe.3G280400_v2.0.a1 Prupe.3G280400_v2.0.a1 Prupe.3G280400_v2.0.a1 Prupe.3G280400_v2.0.a1 Prupe.3G280400_v2.0.a1 Prupe.3G280400_v2.0.a1 Prupe.3G280400_v2.0.a1 Prupe.3G280400_v2.0.a1 Prupe.3G280400_v2.0.a1 Prupe.3G280400_v2.0.a1 Prupe.3G280400_v2.0.a1 |
| pyrus_communis | pycom17g03480 |
| rosa_chinensis | RchiOBHm_Chr2g0170641 |
| rosa_laevigata | RLG00000021972 |
| rosa_multiflora | Rmu_sc0003787.1_g000012 Rmu_sc0003787.1_g000023 Rmu_sc0015334.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00081150 |
| rosa_rugosa | Rorug02G0550100 |
| rosa_samantha | Rh2AG622900 Rh2AG623100 Rh2BG633600 Rh2CG602800 Rh2DG646400 |
| rosa_wichuraiana | Rw2G051600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcuI | CTGAAG | 1 cut(s) | 120 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 140 |
| AgsI | TTSAA | 1 cut(s) | 127 |
| AluBI | AGCT | 1 cut(s) | 224 |
| AluI | AGCT | 1 cut(s) | 224 |
| AsuHPI | GGTGA | 1 cut(s) | 193 |
| BccI | CCATC | 1 cut(s) | 88 |
| BfaI | CTAG | 1 cut(s) | 206 |
| BmsI | GCATC | 1 cut(s) | 42 |
| BpuEI | CTTGAG | 1 cut(s) | 57 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 140 |
| Bse118I | RCCGGY | 2 cut(s) | 133, 178 |
| BseGI | GGATG | 2 cut(s) | 57, 99 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 140 |
| BseRI | GAGGAG | 1 cut(s) | 44 |
| BseYI | CCCAGC | 1 cut(s) | 140 |
| BsiSI | CCGG | 2 cut(s) | 134, 179 |
| BslFI | GGGAC | 1 cut(s) | 134 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 140 |
| BsmFI | GGGAC | 1 cut(s) | 134 |
| BsrFI | RCCGGY | 2 cut(s) | 133, 178 |
| BssAI | RCCGGY | 2 cut(s) | 133, 178 |
| Bst4CI | ACNGT | 2 cut(s) | 62, 217 |
| Bst6I | CTCTTC | 1 cut(s) | 80 |
| BstF5I | GGATG | 2 cut(s) | 57, 99 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 146 |
| BtsCI | GGATG | 2 cut(s) | 57, 99 |
| Cfr10I | RCCGGY | 2 cut(s) | 133, 178 |
| CviJI | RGCY | 3 cut(s) | 98, 163, 224 |
| CviKI_1 | RGCY | 3 cut(s) | 98, 163, 224 |
| Eam1104I | CTCTTC | 1 cut(s) | 80 |
| EarI | CTCTTC | 1 cut(s) | 80 |
| Eco57I | CTGAAG | 1 cut(s) | 120 |
| FaiI | YATR | 2 cut(s) | 147, 152 |
| FaqI | GGGAC | 1 cut(s) | 134 |
| FokI | GGATG | 2 cut(s) | 64, 106 |
| FspBI | CTAG | 1 cut(s) | 206 |
| GsaI | CCCAGC | 1 cut(s) | 144 |
| HapII | CCGG | 2 cut(s) | 134, 179 |
| HindIII | AAGCTT | 1 cut(s) | 222 |
| HinfI | GANTC | 2 cut(s) | 44, 88 |
| HpaII | CCGG | 2 cut(s) | 134, 179 |
| HphI | GGTGA | 1 cut(s) | 193 |
| Hpy188I | TCNGA | 2 cut(s) | 39, 93 |
| Hpy188III | TCNNGA | 1 cut(s) | 74 |
| HpyAV | CCTTC | 1 cut(s) | 5 |
| HpyCH4III | ACNGT | 2 cut(s) | 62, 217 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 146 |
| LpnPI | CCDG | 4 cut(s) | 126, 147, 149, 192 |
| LweI | GCATC | 1 cut(s) | 42 |
| MaeI | CTAG | 1 cut(s) | 206 |
| MaeIII | GTNAC | 1 cut(s) | 209 |
| MboII | GAAGA | 2 cut(s) | 16, 97 |
| MluCI | AATT | 1 cut(s) | 21 |
| MlyI | GAGTC | 1 cut(s) | 97 |
| MmeI | TCCRAC | 1 cut(s) | 71 |
| MnlI | CCTC | 3 cut(s) | 22, 111, 177 |
| MspI | CCGG | 2 cut(s) | 134, 179 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 146 |
| PfeI | GAWTC | 1 cut(s) | 44 |
| PleI | GAGTC | 1 cut(s) | 96 |
| PpsI | GAGTC | 1 cut(s) | 96 |
| PspFI | CCCAGC | 1 cut(s) | 140 |
| SchI | GAGTC | 1 cut(s) | 97 |
| SetI | ASST | 3 cut(s) | 16, 211, 226 |
| SfaNI | GCATC | 1 cut(s) | 42 |
| SgeI | CNNG | 8 cut(s) | 60, 86, 136, 146, 153, 176, 191, 218 |
| SgrAI | CRCCGGYG | 1 cut(s) | 178 |
| SmlI | CTYRAG | 1 cut(s) | 72 |
| SmoI | CTYRAG | 1 cut(s) | 72 |
| Sse9I | AATT | 1 cut(s) | 21 |
| SspMI | CTAG | 1 cut(s) | 206 |
| TaaI | ACNGT | 2 cut(s) | 62, 217 |
| TaqI | TCGA | 1 cut(s) | 18 |
| TasI | AATT | 1 cut(s) | 21 |
| TfiI | GAWTC | 1 cut(s) | 44 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| XspI | CTAG | 1 cut(s) | 206 |