Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex functions in docking export-competent ribonucleoprotein particles (mRNPs) to the nuclear entrance of the nuclear pore complex (nuclear basket). TREX-2 participates in mRNA export and accurate chromatin positioning in the nucleus by tethering genes to the nuclear periphery
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G27100 AT3G27100 |
| fragaria_vesca | FvH4_6g53480 FvH4_6g53480 |
| malus_domestica | MD00G1139400.v1.1 MD09G1011100.v1.1 |
| prunus_persica | Prupe.3G305900_v2.0.a1 Prupe.3G305900_v2.0.a1 |
| pyrus_communis | pycom111g00940 |
| rosa_chinensis | RchiOBHm_Chr2g0175521 |
| rosa_laevigata | RLG00000022335 |
| rosa_multiflora | Rmu_sc0021955.1_g000007 |
| rosa_roxburghii | Rroxscaffold_2G00077240 |
| rosa_rugosa | Rorug02G0585800 |
| rosa_samantha | Rh2CG639000 |
| rosa_wichuraiana | Rw2G054510 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 194 |
| AccBSI | CCGCTC | 1 cut(s) | 102 |
| AciI | CCGC | 2 cut(s) | 23, 102 |
| AcsI | RAATTY | 1 cut(s) | 303 |
| AcyI | GRCGYC | 1 cut(s) | 29 |
| AfaI | GTAC | 1 cut(s) | 237 |
| AflIII | ACRYGT | 1 cut(s) | 238 |
| AgsI | TTSAA | 1 cut(s) | 71 |
| AluBI | AGCT | 5 cut(s) | 76, 127, 176, 292, 329 |
| AluI | AGCT | 5 cut(s) | 76, 127, 176, 292, 329 |
| ApeKI | GCWGC | 1 cut(s) | 326 |
| ApoI | RAATTY | 1 cut(s) | 303 |
| AseI | ATTAAT | 1 cut(s) | 119 |
| AsuHPI | GGTGA | 3 cut(s) | 25, 116, 238 |
| BanII | GRGCYC | 1 cut(s) | 63 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 287, 298, 321, 332 |
| BisI | GCNGC | 1 cut(s) | 327 |
| BlpI | GCTNAGC | 1 cut(s) | 288 |
| BlsI | GCNGC | 1 cut(s) | 328 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 288 |
| BsaHI | GRCGYC | 1 cut(s) | 29 |
| BseGI | GGATG | 3 cut(s) | 40, 169, 232 |
| BseMII | CTCAG | 2 cut(s) | 122, 279 |
| BsiSI | CCGG | 1 cut(s) | 32 |
| Bsp1286I | GDGCHC | 1 cut(s) | 63 |
| Bsp1407I | TGTACA | 1 cut(s) | 235 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 288 |
| BspACI | CCGC | 2 cut(s) | 23, 102 |
| BspCNI | CTCAG | 2 cut(s) | 123, 280 |
| BsrBI | CCGCTC | 1 cut(s) | 102 |
| BsrGI | TGTACA | 1 cut(s) | 235 |
| BssNI | GRCGYC | 1 cut(s) | 29 |
| Bst4CI | ACNGT | 1 cut(s) | 223 |
| BstACI | GRCGYC | 1 cut(s) | 29 |
| BstAUI | TGTACA | 1 cut(s) | 235 |
| BstDEI | CTNAG | 2 cut(s) | 131, 288 |
| BstF5I | GGATG | 3 cut(s) | 40, 169, 232 |
| BstNSI | RCATGY | 1 cut(s) | 242 |
| BtsCI | GGATG | 3 cut(s) | 40, 169, 232 |
| CseI | GACGC | 1 cut(s) | 37 |
| Csp6I | GTAC | 1 cut(s) | 236 |
| CviAII | CATG | 1 cut(s) | 239 |
| CviJI | RGCY | 9 cut(s) | 61, 76, 127, 142, 176, 263, 287, 292, 329 |
| CviKI_1 | RGCY | 9 cut(s) | 61, 76, 127, 142, 176, 263, 287, 292, 329 |
| CviQI | GTAC | 1 cut(s) | 236 |
| DdeI | CTNAG | 2 cut(s) | 131, 288 |
| EciI | GGCGGA | 1 cut(s) | 12 |
| Eco24I | GRGCYC | 1 cut(s) | 63 |
| EcoRI | GAATTC | 1 cut(s) | 303 |
| EcoT38I | GRGCYC | 1 cut(s) | 63 |
| FaeI | CATG | 1 cut(s) | 242 |
| FaiI | YATR | 4 cut(s) | 41, 194, 240, 281 |
| FatI | CATG | 1 cut(s) | 238 |
| Fnu4HI | GCNGC | 1 cut(s) | 327 |
| FokI | GGATG | 3 cut(s) | 47, 176, 239 |
| FriOI | GRGCYC | 1 cut(s) | 63 |
| Fsp4HI | GCNGC | 1 cut(s) | 327 |
| GluI | GCNGC | 1 cut(s) | 327 |
| HapII | CCGG | 1 cut(s) | 32 |
| HgaI | GACGC | 1 cut(s) | 37 |
| Hin1I | GRCGYC | 1 cut(s) | 29 |
| Hin1II | CATG | 1 cut(s) | 242 |
| HinfI | GANTC | 3 cut(s) | 16, 46, 275 |
| HpaII | CCGG | 1 cut(s) | 32 |
| HphI | GGTGA | 3 cut(s) | 25, 116, 238 |
| Hpy188I | TCNGA | 1 cut(s) | 132 |
| Hpy188III | TCNNGA | 2 cut(s) | 71, 272 |
| Hpy99I | CGWCG | 1 cut(s) | 31 |
| HpyAV | CCTTC | 1 cut(s) | 154 |
| HpyCH4III | ACNGT | 1 cut(s) | 223 |
| HpyCH4IV | ACGT | 1 cut(s) | 311 |
| HpyCH4V | TGCA | 2 cut(s) | 183, 298 |
| HpyF3I | CTNAG | 2 cut(s) | 131, 288 |
| HpySE526I | ACGT | 1 cut(s) | 311 |
| Hsp92I | GRCGYC | 1 cut(s) | 29 |
| Hsp92II | CATG | 1 cut(s) | 242 |
| LmnI | GCTCC | 1 cut(s) | 124 |
| LpnPI | CCDG | 2 cut(s) | 45, 169 |
| MaeII | ACGT | 1 cut(s) | 311 |
| MaeIII | GTNAC | 1 cut(s) | 217 |
| MbiI | CCGCTC | 1 cut(s) | 102 |
| MhlI | GDGCHC | 1 cut(s) | 63 |
| MluCI | AATT | 1 cut(s) | 303 |
| MnlI | CCTC | 3 cut(s) | 126, 201, 274 |
| MseI | TTAA | 1 cut(s) | 119 |
| MspI | CCGG | 1 cut(s) | 32 |
| NlaIII | CATG | 1 cut(s) | 242 |
| NspI | RCATGY | 1 cut(s) | 242 |
| PciI | ACATGT | 1 cut(s) | 238 |
| PfeI | GAWTC | 3 cut(s) | 16, 46, 275 |
| PkrI | GCNGC | 1 cut(s) | 328 |
| PscI | ACATGT | 1 cut(s) | 238 |
| PshBI | ATTAAT | 1 cut(s) | 119 |
| PsiI | TTATAA | 1 cut(s) | 194 |
| RsaI | GTAC | 1 cut(s) | 237 |
| RsaNI | GTAC | 1 cut(s) | 236 |
| SaqAI | TTAA | 1 cut(s) | 119 |
| SatI | GCNGC | 1 cut(s) | 327 |
| SduI | GDGCHC | 1 cut(s) | 63 |
| SetI | ASST | 7 cut(s) | 78, 129, 178, 234, 294, 314, 331 |
| Sse9I | AATT | 1 cut(s) | 303 |
| SsiI | CCGC | 2 cut(s) | 23, 102 |
| TaaI | ACNGT | 1 cut(s) | 223 |
| TaiI | ACGT | 1 cut(s) | 314 |
| TaqI | TCGA | 1 cut(s) | 87 |
| TasI | AATT | 1 cut(s) | 303 |
| TatI | WGTACW | 1 cut(s) | 235 |
| TfiI | GAWTC | 3 cut(s) | 16, 46, 275 |
| Tru1I | TTAA | 1 cut(s) | 119 |
| Tru9I | TTAA | 1 cut(s) | 119 |
| TseI | GCWGC | 1 cut(s) | 326 |
| TspDTI | ATGAA | 2 cut(s) | 180, 185 |
| VspI | ATTAAT | 1 cut(s) | 119 |
| XapI | RAATTY | 1 cut(s) | 303 |
| XceI | RCATGY | 1 cut(s) | 242 |