Rh2CG639000

Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex functions in docking export-competent ribonucleoprotein particles (mRNPs) to the nuclear entrance of the nuclear pore complex (nuclear basket). TREX-2 participates in mRNA export and accurate chromatin positioning in the nucleus by tethering genes to the nuclear periphery

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0015292
Physical Location & Seq
Forward (+)
80991980 .. 80995181
3202 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG639000.1

Sequence Viewer

Length: 339 bp
ATGAGGAAATCGGTGAATCGTCAGTCGACGCCGGATGTTGAGGAGAATCAAGAAGACAAGGAGCCCAGTTTCCAAGAACTCATCAACATCGAGTTGATTGAGAGCGGTGAAAAGGAGCGGTTAATGGAGCTACTGAGGGAGAGGCTAATTGAGTGTGGGTGGAAGGATGAAATGAAAGCTCTTTGCAGGTCATTCATAAAGAAAAAAGGAAGGAACAATGTTACTGTGGATGACCTTGTACATGTAATCACCCCAAAGGGCAGAGCCTCCATTCCTGATTCCGTAAAGGCAGAGCTTTTGCAAAGGATTCGTACGTTCCTGATGTCGGCAGCTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EnY2

Protein Analysis

112

Amino Acids

12.97

Weight (kDa)

6.61

Isoelectric Point (pI)

56.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EnY2 PF10163 27 - 107 6.8e-32 Transcription factor e(y)2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015292)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27100 AT3G27100
fragaria_vesca FvH4_6g53480 FvH4_6g53480
malus_domestica MD00G1139400.v1.1 MD09G1011100.v1.1
prunus_persica Prupe.3G305900_v2.0.a1 Prupe.3G305900_v2.0.a1
pyrus_communis pycom111g00940
rosa_chinensis RchiOBHm_Chr2g0175521
rosa_laevigata RLG00000022335
rosa_multiflora Rmu_sc0021955.1_g000007
rosa_roxburghii Rroxscaffold_2G00077240
rosa_rugosa Rorug02G0585800
rosa_samantha Rh2CG639000
rosa_wichuraiana Rw2G054510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 177
AccBSI CCGCTC 2 cut(s) 105, 118
AccI GTMKAC 1 cut(s) 26
AciI CCGC 2 cut(s) 105, 118
AcyI GRCGYC 1 cut(s) 29
AfaI GTAC 2 cut(s) 240, 313
AfiI CCNNNNNNNGG 1 cut(s) 325
AflIII ACRYGT 1 cut(s) 241
AluBI AGCT 4 cut(s) 130, 179, 295, 332
AluI AGCT 4 cut(s) 130, 179, 295, 332
ApeKI GCWGC 1 cut(s) 329
AsuHPI GGTGA 3 cut(s) 25, 119, 241
BanII GRGCYC 1 cut(s) 66
BbsI GAAGAC 1 cut(s) 60
BcgI CGANNNNNNTGC 2 cut(s) 290, 324
BfuAI ACCTGC 1 cut(s) 177
BisI GCNGC 1 cut(s) 330
BlsI GCNGC 1 cut(s) 331
BmiI GGNNCC 1 cut(s) 63
BmrI ACTGGG 1 cut(s) 60
BmuI ACTGGG 1 cut(s) 60
BpiI GAAGAC 1 cut(s) 60
BsaHI GRCGYC 1 cut(s) 29
Bsc4I CCNNNNNNNGG 1 cut(s) 325
Bse1I ACTGG 1 cut(s) 66
BseGI GGATG 3 cut(s) 40, 172, 235
BseLI CCNNNNNNNGG 1 cut(s) 325
BseMII CTCAG 1 cut(s) 125
BseNI ACTGG 1 cut(s) 66
BseRI GAGGAG 1 cut(s) 56
BsiSI CCGG 1 cut(s) 32
BsiWI CGTACG 1 cut(s) 311
BslI CCNNNNNNNGG 1 cut(s) 325
Bsp1286I GDGCHC 1 cut(s) 66
Bsp1407I TGTACA 1 cut(s) 238
BspACI CCGC 2 cut(s) 105, 118
BspCNI CTCAG 1 cut(s) 126
BspLI GGNNCC 1 cut(s) 63
BspMI ACCTGC 1 cut(s) 177
BsrBI CCGCTC 2 cut(s) 105, 118
BsrGI TGTACA 1 cut(s) 238
BsrI ACTGG 1 cut(s) 66
BssNI GRCGYC 1 cut(s) 29
Bst4CI ACNGT 1 cut(s) 226
BstACI GRCGYC 1 cut(s) 29
BstAUI TGTACA 1 cut(s) 238
BstDEI CTNAG 1 cut(s) 134
BstF5I GGATG 3 cut(s) 40, 172, 235
BstNSI RCATGY 1 cut(s) 245
BstV2I GAAGAC 1 cut(s) 60
BtsCI GGATG 3 cut(s) 40, 172, 235
BveI ACCTGC 1 cut(s) 177
CseI GACGC 1 cut(s) 37
Csp6I GTAC 2 cut(s) 239, 312
CviAII CATG 1 cut(s) 242
CviJI RGCY 7 cut(s) 64, 130, 145, 179, 266, 295, 332
CviKI_1 RGCY 7 cut(s) 64, 130, 145, 179, 266, 295, 332
CviQI GTAC 2 cut(s) 239, 312
DdeI CTNAG 1 cut(s) 134
Eco24I GRGCYC 1 cut(s) 66
EcoT38I GRGCYC 1 cut(s) 66
FaeI CATG 1 cut(s) 245
FaiI YATR 2 cut(s) 197, 243
FatI CATG 1 cut(s) 241
FblI GTMKAC 1 cut(s) 26
Fnu4HI GCNGC 1 cut(s) 330
FokI GGATG 3 cut(s) 47, 179, 242
FriOI GRGCYC 1 cut(s) 66
Fsp4HI GCNGC 1 cut(s) 330
GluI GCNGC 1 cut(s) 330
HapII CCGG 1 cut(s) 32
HgaI GACGC 1 cut(s) 37
Hin1I GRCGYC 1 cut(s) 29
Hin1II CATG 1 cut(s) 245
HincII GTYRAC 1 cut(s) 27
HindII GTYRAC 1 cut(s) 27
HinfI GANTC 4 cut(s) 16, 46, 278, 307
HpaII CCGG 1 cut(s) 32
HphI GGTGA 3 cut(s) 25, 119, 241
Hpy166II GTNNAC 1 cut(s) 27
Hpy188III TCNNGA 3 cut(s) 50, 275, 319
Hpy8I GTNNAC 1 cut(s) 27
Hpy99I CGWCG 1 cut(s) 31
HpyAV CCTTC 2 cut(s) 157, 204
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4IV ACGT 1 cut(s) 314
HpyCH4V TGCA 2 cut(s) 186, 301
HpyF3I CTNAG 1 cut(s) 134
HpySE526I ACGT 1 cut(s) 314
Hsp92I GRCGYC 1 cut(s) 29
Hsp92II CATG 1 cut(s) 245
LmnI GCTCC 3 cut(s) 61, 115, 127
LpnPI CCDG 5 cut(s) 45, 79, 172, 288, 332
MaeII ACGT 1 cut(s) 314
MaeIII GTNAC 1 cut(s) 220
MbiI CCGCTC 2 cut(s) 105, 118
MboII GAAGA 1 cut(s) 65
MhlI GDGCHC 1 cut(s) 66
MluCI AATT 1 cut(s) 147
MnlI CCTC 4 cut(s) 34, 129, 135, 277
MseI TTAA 2 cut(s) 122, 337
MspI CCGG 1 cut(s) 32
NlaIII CATG 1 cut(s) 245
NlaIV GGNNCC 1 cut(s) 63
NspI RCATGY 1 cut(s) 245
PciI ACATGT 1 cut(s) 241
PfeI GAWTC 4 cut(s) 16, 46, 278, 307
Pfl23II CGTACG 1 cut(s) 311
PkrI GCNGC 1 cut(s) 331
PscI ACATGT 1 cut(s) 241
PspLI CGTACG 1 cut(s) 311
PspN4I GGNNCC 1 cut(s) 63
RsaI GTAC 2 cut(s) 240, 313
RsaNI GTAC 2 cut(s) 239, 312
SalI GTCGAC 1 cut(s) 25
SaqAI TTAA 2 cut(s) 122, 337
SatI GCNGC 1 cut(s) 330
SduI GDGCHC 1 cut(s) 66
SetI ASST 7 cut(s) 132, 181, 191, 237, 297, 317, 334
Sse9I AATT 1 cut(s) 147
SsiI CCGC 2 cut(s) 105, 118
TaaI ACNGT 1 cut(s) 226
TaiI ACGT 1 cut(s) 317
TaqI TCGA 2 cut(s) 26, 90
TasI AATT 1 cut(s) 147
TatI WGTACW 1 cut(s) 238
TfiI GAWTC 4 cut(s) 16, 46, 278, 307
Tru1I TTAA 2 cut(s) 122, 337
Tru9I TTAA 2 cut(s) 122, 337
TseI GCWGC 1 cut(s) 329
TspDTI ATGAA 3 cut(s) 183, 184, 188
TspGWI ACGGA 1 cut(s) 271
XceI RCATGY 1 cut(s) 245
XmiI GTMKAC 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.