Prupe.4G005400_v2.0.a1

Microtubule-associated protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
314661 .. 318736
4076 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G005400.1

Sequence Viewer

Length: 1740 bp
ATGGTGTGTCATGAAGAACAACTTGGAGTTGGACGGGTTGGGGGAGAGGACCTCTCCCTTGTCCATCCAGACCCTGTTGTGTTAGAGCTCAACCGTATGCACAACCTACTCACAGAAAAGAGTCGGGAATTAGGGATTGCTCAGGGTGAGATCAAGGCTCTCAGAGCTTGTGAAGTTCTAAAGGATAAGGCTGTAGAAGAGCTCATAAATGAAGTACAGAAATTGGACGAGAAACACAGAGTCACTGAAAGTCTTTTGGAGCATAAGAATCTTGAAATCAAGAAACTAACAGATGACAAGAGAGATGCATTGGCTGCACAATACGCTGCAGAAGCAACTGTTAGAAGGGTACATGCAAATCGAAAGGATGACGAATCTCCTTCTATCGAGTCTGTCGTCGCTCCTCTTGAGGCTGAAATCAAAATGCATAAGAATGAGATTGCAGCGCTTCAGGAGGATAACAAGGCTTTGCAACGTCTCACCAAGTCAAAAGAGTCTGCTCTTCTTGAAGCAGAAAGGATACTCCGAAGTGCACTAGAAAGGGCTCTAATAGTTGAAGAGGTTCAAAACCACAACGTCGAATTGAAGAGACAGATTGAGATCTGCCAGGAGGAAAACAGAATCCTAGAGAAAACAAACCGCCAGAAGGTTTTAGAGGTTGAAAAGCTTAGCCAAACCATTCAGGAACTTGAGGAGGCCATCTTAGCTGGTGGGGCTGCAGCCAATGCTATCCGTGACTACAAACGACAGATAGAAGAATTGCATGAGGAGAAGAGAAGTCTGGAAAGAGAGCTGGCAAGAGTTAAAGTTTCAGCAAACCGGGTAGCAACTGTGATTGCAAATGAGTGGAAGGATGAAAATGACAAAGTTATGCCCGTTAAACAGTGGCTGGAAGAGAGAAGACTAATGCAGGCAGACATGCAACGGTTGAGAGAGAAGCTGGCTATTTCAGATAGAACAGCTAAGGCTGAAGCACAACTCAAGGAAAAGTTGAAGTTGAGGCTGAAGACACTAGAAGAAGGGCTAAAGCATGTTTCAAGCTTCAATCCTCATTTATGTGTTTCCCCAAAAGCAGAAAAATCTAGTAACTTCTTAGGATTTCTGAAAAGCAATGGTGGATTAGGAAAGAGATCGACGTCACAGCCAAGAGCTTCTACCATTGCTAGAAGCTCTCCAGTGCAACAGCCAAATTCAGACAACGAAGCAGGCAATGCAGCTGGACAGCTAAAAAGATCAAATAGCCTCAGAAAGAAATATGGTTCTGGAGAACTTATGTTGAAAAAAAGTTTATGGGCATCTCGAAGTAAAGTTGTTGATATTGGTGAAAAGGAGAACACAGAAATGAAGGCAAATAATGATACTAATAAGAACGATGATAGAATGGTTGCCACAGAAATTGAAGCTCAAGCCGGTGGCAACGAGGACTCGCCCAACAAGATAAGTACCAGCTGTGACAATGAAGATATGGTCTCAGGATTTCTCTATGATAGACTTCAGAAGGAGGTCCTAAATCTAAGGAGGCATTGTGAAGCCAAAGAGAGTGATATGAATGCTAAAGATCAAGAAATAAAGATGCTGATGAAAAAGGTTGATGCACTGTCAAAAGCCATGGAAGTAGAGTCTAAGAAAATGAAGAGAGAAGCAGCGGCTAGAGATAAAGAAGCTGCAGCGGCCAAAATGGATGATAACAAAAAGAACAGAAATATAAACTCCTCTAAACGGGCAATGAAAGCATCTTGA

Protein Analysis

580

Amino Acids

65.37

Weight (kDa)

8.44

Isoelectric Point (pI)

57.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17220
fragaria_vesca FvH4_3g00480 FvH4_3g00480
malus_domestica MD00G1056800.v1.1
prunus_persica Prupe.4G005400_v2.0.a1
pyrus_communis pycom05g32710
rosa_chinensis RchiOBHm_Chr5g0000651
rosa_laevigata RLG00000030885
rosa_multiflora Rmu_sc0011992.1_g000012
rosa_roxburghii Rroxscaffold_1G00075550
rosa_rugosa Rorug04G0385500
rosa_samantha Rh5AG005300 Rh5BG006900 Rh5CG005900 Rh5DG005800
rosa_wichuraiana Rw5G000550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1139
AciI CCGC 3 cut(s) 640, 1646, 1670
AcoI YGGCCR 1 cut(s) 1671
AcsI RAATTY 1 cut(s) 1189
AcuI CTGAAG 4 cut(s) 434, 990, 1025, 1478
AcyI GRCGYC 1 cut(s) 1136
AfaI GTAC 3 cut(s) 216, 351, 1444
AfeI AGCGCT 1 cut(s) 447
AfiI CCNNNNNNNGG 2 cut(s) 646, 1719
AjnI CCWGG 1 cut(s) 606
AjuI GAANNNNNNNTTGG 1 cut(s) 38
Alw21I GWGCWC 3 cut(s) 90, 204, 535
Alw26I GTCTC 3 cut(s) 482, 583, 1474
Alw44I GTGCAC 1 cut(s) 531
AlwNI CAGNNNCTG 2 cut(s) 74, 889
Aor51HI AGCGCT 1 cut(s) 447
AoxI GGCC 2 cut(s) 696, 1671
ApaLI GTGCAC 1 cut(s) 531
ApeKI GCWGC 9 cut(s) 314, 326, 443, 716, 719, 1214, 1643, 1664, 1667
ApoI RAATTY 1 cut(s) 1189
Asp700I GAANNNNTTC 1 cut(s) 561
AspLEI GCGC 1 cut(s) 448
AspS9I GGNCC 2 cut(s) 49, 1504
AsuC2I CCSGG 1 cut(s) 821
AsuHPI GGTGA 3 cut(s) 158, 472, 1334
AvaII GGWCC 2 cut(s) 49, 1504
BaeGI GKGCMC 1 cut(s) 535
BanII GRGCYC 3 cut(s) 90, 204, 547
BbsI GAAGAC 2 cut(s) 907, 1013
Bbv12I GWGCWC 3 cut(s) 90, 204, 535
BbvI GCAGC 9 cut(s) 301, 313, 455, 703, 731, 1226, 1651, 1655, 1679
BccI CCATC 2 cut(s) 72, 707
BciT130I CCWGG 1 cut(s) 608
BciVI GTATCC 1 cut(s) 513
BcnI CCSGG 1 cut(s) 821
BcoDI GTCTC 3 cut(s) 482, 583, 1474
BfaI CTAG 6 cut(s) 536, 626, 1013, 1083, 1164, 1650
BfmI CTRYAG 4 cut(s) 192, 327, 717, 1665
BfoI RGCGCY 1 cut(s) 449
BfuI GTATCC 1 cut(s) 513
BglII AGATCT 1 cut(s) 600
BlpI GCTNAGC 1 cut(s) 668
Bme1390I CCNGG 2 cut(s) 608, 821
Bme18I GGWCC 2 cut(s) 49, 1504
BmgT120I GGNCC 2 cut(s) 49, 1504
BmrFI CCNGG 2 cut(s) 608, 821
BmsI GCATC 4 cut(s) 295, 1304, 1563, 1582
BpiI GAAGAC 2 cut(s) 907, 1013
BplI GAGNNNNNCTC 4 cut(s) 36, 68, 38, 70
BpmI CTGGAG 2 cut(s) 1158, 1284
Bpu10I CCTNAGC 2 cut(s) 141, 963
Bpu1102I GCTNAGC 1 cut(s) 668
BpuEI CTTGAG 4 cut(s) 428, 710, 965, 1389
BpuMI CCSGG 1 cut(s) 821
BsaBI GATNNNNATC 1 cut(s) 599
BsaHI GRCGYC 1 cut(s) 1136
BsaI GGTCTC 1 cut(s) 1474
BsaJI CCNNGG 1 cut(s) 1608
BsaXI ACNNNNNCTCC 2 cut(s) 1510, 1540
Bsc4I CCNNNNNNNGG 2 cut(s) 646, 1719
Bse118I RCCGGY 1 cut(s) 1409
Bse1I ACTGG 1 cut(s) 1175
Bse3DI GCAATG 4 cut(s) 1117, 1158, 1216, 1731
Bse8I GATNNNNATC 1 cut(s) 599
BseBI CCWGG 1 cut(s) 608
BseDI CCNNGG 1 cut(s) 1608
BseGI GGATG 4 cut(s) 64, 373, 859, 1687
BseJI GATNNNNATC 1 cut(s) 599
BseLI CCNNNNNNNGG 2 cut(s) 646, 1719
BseMI GCAATG 4 cut(s) 1117, 1158, 1216, 1731
BseMII CTCAG 4 cut(s) 155, 175, 1258, 1485
BseNI ACTGG 1 cut(s) 1175
BseRI GAGGAG 4 cut(s) 393, 707, 782, 1702
BseSI GKGCMC 1 cut(s) 535
BseXI GCAGC 9 cut(s) 301, 313, 455, 703, 731, 1226, 1651, 1655, 1679
BsgI GTGCAG 1 cut(s) 300
BshFI GGCC 2 cut(s) 698, 1673
BsiHKAI GWGCWC 3 cut(s) 90, 204, 535
BsiSI CCGG 2 cut(s) 820, 1410
BslI CCNNNNNNNGG 2 cut(s) 646, 1719
BsmAI GTCTC 3 cut(s) 482, 583, 1474
BsmBI CGTCTC 1 cut(s) 482
BsmI GAATGC 1 cut(s) 1555
BsnI GGCC 2 cut(s) 698, 1673
Bso31I GGTCTC 1 cut(s) 1474
Bsp1286I GDGCHC 4 cut(s) 90, 204, 535, 547
Bsp143I GATC 5 cut(s) 150, 600, 1130, 1232, 1558
Bsp1720I GCTNAGC 1 cut(s) 668
Bsp19I CCATGG 1 cut(s) 1608
BspACI CCGC 3 cut(s) 640, 1646, 1670
BspANI GGCC 2 cut(s) 698, 1673
BspCNI CTCAG 4 cut(s) 154, 174, 1257, 1484
BspHI TCATGA 1 cut(s) 10
BspMAI CTGCAG 3 cut(s) 331, 721, 1669
BspQI GCTCTTC 2 cut(s) 192, 507
BspTNI GGTCTC 1 cut(s) 1474
BsrDI GCAATG 4 cut(s) 1117, 1158, 1216, 1731
BsrFI RCCGGY 1 cut(s) 1409
BsrI ACTGG 1 cut(s) 1175
BssAI RCCGGY 1 cut(s) 1409
BssECI CCNNGG 1 cut(s) 1608
BssMI GATC 5 cut(s) 150, 600, 1130, 1232, 1558
BssNI GRCGYC 1 cut(s) 1136
BssT1I CCWWGG 1 cut(s) 1608
Bst2UI CCWGG 1 cut(s) 608
Bst4CI ACNGT 6 cut(s) 95, 340, 832, 885, 927, 1599
Bst6I CTCTTC 7 cut(s) 192, 507, 552, 581, 767, 888, 1628
BstACI GRCGYC 1 cut(s) 1136
BstAPI GCANNNNNTGC 3 cut(s) 314, 725, 1211
BstC8I GCNNGC 4 cut(s) 795, 912, 942, 1207
BstDSI CCRYGG 1 cut(s) 1608
BstF5I GGATG 4 cut(s) 64, 373, 859, 1687
BstH2I RGCGCY 1 cut(s) 449
BstHHI GCGC 1 cut(s) 448
BstKTI GATC 5 cut(s) 153, 603, 1133, 1235, 1561
BstMAI GTCTC 3 cut(s) 482, 583, 1474
BstMBI GATC 5 cut(s) 150, 600, 1130, 1232, 1558
BstNI CCWGG 1 cut(s) 608
BstNSI RCATGY 3 cut(s) 356, 922, 1034
BstSCI CCNGG 2 cut(s) 606, 819
BstSFI CTRYAG 4 cut(s) 192, 327, 717, 1665
BstSLI GKGCMC 1 cut(s) 535
BstV1I GCAGC 9 cut(s) 301, 313, 455, 703, 731, 1226, 1651, 1655, 1679
BstV2I GAAGAC 2 cut(s) 907, 1013
BstX2I RGATCY 1 cut(s) 600
BstYI RGATCY 1 cut(s) 600
BsuI GTATCC 1 cut(s) 513
BsuRI GGCC 2 cut(s) 698, 1673
BtgI CCRYGG 1 cut(s) 1608
BtsCI GGATG 4 cut(s) 64, 373, 859, 1687
BtsIMutI CAGTG 4 cut(s) 243, 890, 1182, 1595
Cac8I GCNNGC 4 cut(s) 795, 912, 942, 1207
CaiI CAGNNNCTG 2 cut(s) 74, 889
CciI TCATGA 1 cut(s) 10
CfoI GCGC 1 cut(s) 448
Cfr10I RCCGGY 1 cut(s) 1409
Cfr13I GGNCC 2 cut(s) 49, 1504
Csp6I GTAC 3 cut(s) 215, 350, 1443
CspCI CAANNNNNGTGG 2 cut(s) 1378, 1413
CviAII CATG 6 cut(s) 11, 353, 764, 919, 1031, 1609
CviQI GTAC 3 cut(s) 215, 350, 1443
DpnI GATC 5 cut(s) 152, 602, 1132, 1234, 1560
DpnII GATC 5 cut(s) 150, 600, 1130, 1232, 1558
EaeI YGGCCR 1 cut(s) 1671
Eam1104I CTCTTC 7 cut(s) 192, 507, 552, 581, 767, 888, 1628
EarI CTCTTC 7 cut(s) 192, 507, 552, 581, 767, 888, 1628
Ecl136II GAGCTC 2 cut(s) 88, 202
Eco130I CCWWGG 1 cut(s) 1608
Eco24I GRGCYC 3 cut(s) 90, 204, 547
Eco31I GGTCTC 1 cut(s) 1474
Eco47I GGWCC 2 cut(s) 49, 1504
Eco47III AGCGCT 1 cut(s) 447
Eco53kI GAGCTC 2 cut(s) 88, 202
Eco57I CTGAAG 4 cut(s) 434, 990, 1025, 1478
EcoICRI GAGCTC 2 cut(s) 88, 202
EcoO109I RGGNCCY 2 cut(s) 49, 1504
EcoRII CCWGG 1 cut(s) 606
EcoT14I CCWWGG 1 cut(s) 1608
EcoT22I ATGCAT 2 cut(s) 310, 429
EcoT38I GRGCYC 3 cut(s) 90, 204, 547
ErhI CCWWGG 1 cut(s) 1608
Esp3I CGTCTC 1 cut(s) 482
FaeI CATG 6 cut(s) 14, 356, 767, 922, 1034, 1612
FalI AAGNNNNNCTT 1 cut(s) 38
FatI CATG 6 cut(s) 10, 352, 763, 918, 1030, 1608
FokI GGATG 4 cut(s) 51, 380, 866, 1694
FriOI GRGCYC 3 cut(s) 90, 204, 547
FspBI CTAG 6 cut(s) 536, 626, 1013, 1083, 1164, 1650
GlaI GCGC 1 cut(s) 447
GsuI CTGGAG 2 cut(s) 1158, 1284
HaeII RGCGCY 1 cut(s) 449
HaeIII GGCC 2 cut(s) 698, 1673
HapII CCGG 2 cut(s) 820, 1410
HhaI GCGC 1 cut(s) 448
Hin1I GRCGYC 1 cut(s) 1136
Hin1II CATG 6 cut(s) 14, 356, 767, 922, 1034, 1612
Hin6I GCGC 1 cut(s) 446
HinP1I GCGC 1 cut(s) 446
HindIII AAGCTT 2 cut(s) 665, 1039
HinfI GANTC 9 cut(s) 121, 240, 268, 374, 389, 494, 621, 1424, 1619
HpaII CCGG 2 cut(s) 820, 1410
HphI GGTGA 3 cut(s) 158, 472, 1334
Hpy166II GTNNAC 1 cut(s) 533
Hpy188I TCNGA 7 cut(s) 164, 527, 952, 1104, 1195, 1247, 1497
Hpy8I GTNNAC 1 cut(s) 533
Hpy99I CGWCG 3 cut(s) 401, 581, 1138
HpyAV CCTTC 7 cut(s) 339, 390, 640, 844, 1013, 1339, 1492
HpyCH4III ACNGT 6 cut(s) 95, 340, 832, 885, 927, 1599
HpyCH4IV ACGT 3 cut(s) 475, 576, 1136
HpySE526I ACGT 3 cut(s) 475, 576, 1136
Hsp92I GRCGYC 1 cut(s) 1136
Hsp92II CATG 6 cut(s) 14, 356, 767, 922, 1034, 1612
HspAI GCGC 1 cut(s) 446
Kzo9I GATC 5 cut(s) 150, 600, 1130, 1232, 1558
LguI GCTCTTC 2 cut(s) 192, 507
LmnI GCTCC 2 cut(s) 259, 406
Lsp1109I GCAGC 9 cut(s) 301, 313, 455, 703, 731, 1226, 1651, 1655, 1679
LweI GCATC 4 cut(s) 295, 1304, 1563, 1582
MaeI CTAG 6 cut(s) 536, 626, 1013, 1083, 1164, 1650
MaeII ACGT 3 cut(s) 475, 576, 1136
MaeIII GTNAC 5 cut(s) 241, 734, 1085, 1137, 1451
MalI GATC 5 cut(s) 152, 602, 1132, 1234, 1560
MboI GATC 5 cut(s) 150, 600, 1130, 1232, 1558
MflI RGATCY 1 cut(s) 600
MhlI GDGCHC 4 cut(s) 90, 204, 535, 547
MluCI AATT 6 cut(s) 128, 221, 581, 758, 1189, 1395
MlyI GAGTC 6 cut(s) 130, 249, 398, 503, 1418, 1628
MmeI TCCRAC 1 cut(s) 10
Mph1103I ATGCAT 2 cut(s) 310, 429
MroXI GAANNNNTTC 1 cut(s) 561
MseI TTAA 2 cut(s) 804, 879
MslI CAYNNNNRTG 3 cut(s) 432, 1056, 1340
MspA1I CMGCKG 4 cut(s) 1217, 1449, 1646, 1670
MspI CCGG 2 cut(s) 820, 1410
MspR9I CCNGG 2 cut(s) 608, 821
Mva1269I GAATGC 1 cut(s) 1555
MvaI CCWGG 1 cut(s) 608
NciI CCSGG 1 cut(s) 821
NcoI CCATGG 1 cut(s) 1608
NdeII GATC 5 cut(s) 150, 600, 1130, 1232, 1558
NlaIII CATG 6 cut(s) 14, 356, 767, 922, 1034, 1612
NmuCI GTSAC 4 cut(s) 241, 734, 1137, 1451
NsiI ATGCAT 2 cut(s) 310, 429
NspI RCATGY 3 cut(s) 356, 922, 1034
PagI TCATGA 1 cut(s) 10
PciSI GCTCTTC 2 cut(s) 192, 507
PcsI WCGNNNNNNNCGW 1 cut(s) 393
PctI GAATGC 1 cut(s) 1555
PdmI GAANNNNTTC 1 cut(s) 561
PfeI GAWTC 3 cut(s) 268, 374, 621
PleI GAGTC 6 cut(s) 129, 248, 397, 502, 1418, 1627
PpsI GAGTC 6 cut(s) 129, 248, 397, 502, 1418, 1627
PpuMI RGGWCCY 2 cut(s) 49, 1504
Psp124BI GAGCTC 2 cut(s) 90, 204
Psp5II RGGWCCY 2 cut(s) 49, 1504
Psp6I CCWGG 1 cut(s) 606
PspGI CCWGG 1 cut(s) 606
PspPI GGNCC 2 cut(s) 49, 1504
PspPPI RGGWCCY 2 cut(s) 49, 1504
PstI CTGCAG 3 cut(s) 331, 721, 1669
PstNI CAGNNNCTG 2 cut(s) 74, 889
PsuI RGATCY 1 cut(s) 600
PvuII CAGCTG 2 cut(s) 1217, 1449
RsaI GTAC 3 cut(s) 216, 351, 1444
RsaNI GTAC 3 cut(s) 215, 350, 1443
RseI CAYNNNNRTG 3 cut(s) 432, 1056, 1340
SacI GAGCTC 2 cut(s) 90, 204
SapI GCTCTTC 2 cut(s) 192, 507
SaqAI TTAA 2 cut(s) 804, 879
Sau3AI GATC 5 cut(s) 150, 600, 1130, 1232, 1558
Sau96I GGNCC 2 cut(s) 49, 1504
SchI GAGTC 6 cut(s) 130, 249, 398, 503, 1418, 1628
ScrFI CCNGG 2 cut(s) 608, 821
SduI GDGCHC 4 cut(s) 90, 204, 535, 547
SfaNI GCATC 4 cut(s) 295, 1304, 1563, 1582
SfcI CTRYAG 4 cut(s) 192, 327, 717, 1665
SinI GGWCC 2 cut(s) 49, 1504
SmiMI CAYNNNNRTG 3 cut(s) 432, 1056, 1340
SmlI CTYRAG 4 cut(s) 407, 689, 980, 1404
SmoI CTYRAG 4 cut(s) 407, 689, 980, 1404
Sse9I AATT 6 cut(s) 128, 221, 581, 758, 1189, 1395
SsiI CCGC 3 cut(s) 640, 1646, 1670
SspMI CTAG 6 cut(s) 536, 626, 1013, 1083, 1164, 1650
SstI GAGCTC 2 cut(s) 90, 204
StyD4I CCNGG 2 cut(s) 606, 819
StyI CCWWGG 1 cut(s) 1608
TaaI ACNGT 6 cut(s) 95, 340, 832, 885, 927, 1599
TaiI ACGT 3 cut(s) 478, 579, 1139
TaqI TCGA 5 cut(s) 361, 387, 579, 1133, 1300
TasI AATT 6 cut(s) 128, 221, 581, 758, 1189, 1395
TatI WGTACW 1 cut(s) 214
TauI GCSGC 2 cut(s) 1649, 1673
TfiI GAWTC 3 cut(s) 268, 374, 621
Tru1I TTAA 2 cut(s) 804, 879
Tru9I TTAA 2 cut(s) 804, 879
TscAI CASTG 4 cut(s) 250, 890, 1182, 1602
TseFI GTSAC 4 cut(s) 241, 734, 1137, 1451
TseI GCWGC 9 cut(s) 314, 326, 443, 716, 719, 1214, 1643, 1664, 1667
Tsp45I GTSAC 4 cut(s) 241, 734, 1137, 1451
TspDTI ATGAA 8 cut(s) 27, 225, 870, 1358, 1473, 1562, 1595, 1646
TspGWI ACGGA 1 cut(s) 722
TspRI CASTG 4 cut(s) 250, 890, 1182, 1602
VneI GTGCAC 1 cut(s) 531
VpaK11BI GGWCC 2 cut(s) 49, 1504
XapI RAATTY 1 cut(s) 1189
XceI RCATGY 3 cut(s) 356, 922, 1034
XmnI GAANNNNTTC 1 cut(s) 561
XspI CTAG 6 cut(s) 536, 626, 1013, 1083, 1164, 1650
ZraI GACGTC 1 cut(s) 1137
Zsp2I ATGCAT 2 cut(s) 310, 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.