RchiOBHm_Chr5g0000651

Microtubule-associated protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
374804 .. 377671
2868 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28218

Sequence Viewer

Length: 1797 bp
ATGGTGGCGGGTCATGAACAACACGTACAACATGCAGCAGCAGGAGGAGGAGGAGGAGAGGACCTCTCTCTAGTCTCCGCAGACCCTGTTGTCTTAGAGCTCAATCGTATGCAGAACCTACTCAAAGAAAAGAGCCGCGAGTTGGGGATTGCTCAGGGTGAGATCAAGGCTCTCAGAGCTACTGAAGTTCTAAAGGATAAAGCTGTAGAAGAGCTAAGTAATGAAGTAGAGAAGCTGGATGAGAAACATAGGCTCACGCAAAATCTTCTAGAGCATAAGGTGTGTTTTGGTTCTTTTAGACTTTTTGGTATCCTTAATGATAGTGATCAACTTTTGTTACTTAAGATACTCTTTTTGTCCAACTCGGATGAAATGCAGAACCTTGAAATTAAGAAACTAACAGATGAGAAGAGAGATGCATTAGCTGCACAATATGCTGCAGAAGCAACTCTTAGAAGGGTACACACAAATCAAAAGGATGACGAACTTCCTTCTCTTGAATCTGTCATTGCTCCTCTCGAGGCTGAAATCAAAATGTGCAAGAATGAGATTGCAGCGCTTCAGGAGGACAATAAGGCTTTGGAACGACTCACCAAGTCGAAAGAGTCGGCTCTTCTTGAGGCAGAAAGGATATTGCGAAGTGCACTAGAAAGAGCTCTAATAGTTGAAGAGGAGGAAAACAGAATCCTTGAGAAAACAAATCGTCAAAAGGTTTTAGAGGTTGAAAAGCTTAGCCAAACCATTCAAGAACTTGAGGAGGCCATTTTAGCTGGAGGGGCTGCTGCCAATGCTATTCGTGACTACAAAAGACAGATAGATGAATTACATGAAGAGAAGAGGACTCTGGAGAGGGAGCTAGCAAGAGTGAAAGTTTCTGCAAACCGAGTAGCTACTGTTATTGCTAACGAGTGGAAGGATGAAAACGACAAAGTTATGCCTGTTAAACAGTGGCTGGAAGAGAGAAGACTTATGCAGGCAGAGATGCAACGTTTGAGGGAGAAGCTAGCAATCTCGGATAGAACAGCCAAGGCAGAGGCACAACTCAAGGAGAAGCTGAAGTTGAGGCTCAAGACTCTAGAAGAAGGGTTAAAGCATGTTTCAAGTTTCTCTGTCAATCCTAATTCATTTTGCCGTTCCCCTAAAACAGAAAAGTCCAGTAACTTCTTAGGATTTCTGACAAGCCCTGGTGGATTAGGAAAGAGATCAACTTCACAGCCAAGAGCCTCCACTCTTAGAAGTTCTCCTCTCCAACAGCCAAATTCAGGCAATGAAACAGCCAATGCTGCTGGAGAGCTAAAAAGATCAAATAGCTTTAAAAAGAGATATGGTTCAGGAGAAAAAATGCTGAGAAAAAGCTTATGGGCTTCTAGAACTAAAGTTGTTGATAGTGGTGAGAAGGAGAACACAGAACAGAATGCAAATACTGATAACAACAAGAATGATGATGAGACAGTTACTGCTGATATAAAAACTAAAGATGGTGCCAATGAAGACTCACCCAACAAGATAAGCATTAACTGTGAAAGTGAAGATGTGGTCTCAGGATTTCTCTATGACAGACTTCAAAAGGAGGTCATCAATCTGAGGAGGCATTGTGAAGTCAAAAAGAGTGATATGAATGCGAAAGAACAAGAAATAAAGATGCTGATGAAAAAGGTTGATGCACTGACAAAAGCCATGGAAGTGGAGTCTAAGAAAATGAAAAGAGAAGCCGTAGCTAGAGATAAAGAAGCTGCAGCAGGCAAGGTGGATGATAACAAAAAGAACAGAACTATAAACTCATCTAAGAGGTTGTAA

Protein Analysis

598

Amino Acids

67.37

Weight (kDa)

8.02

Isoelectric Point (pI)

45.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAP70 PF07058 24 - 93 2.6e-22 Microtubule-associated protein 70
MAP70 PF07058 116 - 596 1.9e-175 Microtubule-associated protein 70
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17220
fragaria_vesca FvH4_3g00480 FvH4_3g00480
malus_domestica MD00G1056800.v1.1
prunus_persica Prupe.4G005400_v2.0.a1
pyrus_communis pycom05g32710
rosa_chinensis RchiOBHm_Chr5g0000651
rosa_laevigata RLG00000030885
rosa_multiflora Rmu_sc0011992.1_g000012
rosa_roxburghii Rroxscaffold_1G00075550
rosa_rugosa Rorug04G0385500
rosa_samantha Rh5AG005300 Rh5BG006900 Rh5CG005900 Rh5DG005800
rosa_wichuraiana Rw5G000550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 89
AccB1I GGYRCC 1 cut(s) 1481
AccII CGCG 1 cut(s) 138
AciI CCGC 3 cut(s) 8, 78, 136
AclI AACGTT 1 cut(s) 988
AcsI RAATTY 1 cut(s) 1258
AcuI CTGAAG 3 cut(s) 204, 545, 1076
AfaI GTAC 2 cut(s) 27, 462
AfeI AGCGCT 1 cut(s) 558
AfiI CCNNNNNNNGG 2 cut(s) 142, 1262
AflII CTTAAG 1 cut(s) 341
AflIII ACRYGT 1 cut(s) 22
AgsI TTSAA 7 cut(s) 386, 500, 668, 725, 746, 1101, 1565
AjnI CCWGG 1 cut(s) 1183
Alw21I GWGCWC 3 cut(s) 102, 646, 658
Alw26I GTCTC 3 cut(s) 79, 1442, 1543
Alw44I GTGCAC 1 cut(s) 642
AlwNI CAGNNNCTG 3 cut(s) 86, 952, 1457
Ama87I CYCGRG 1 cut(s) 518
Aor51HI AGCGCT 1 cut(s) 558
AoxI GGCC 1 cut(s) 759
ApaLI GTGCAC 1 cut(s) 642
ApoI RAATTY 1 cut(s) 1258
AspLEI GCGC 1 cut(s) 559
AspS9I GGNCC 1 cut(s) 61
AsuHPI GGTGA 4 cut(s) 170, 583, 1403, 1488
AsuNHI GCTAGC 2 cut(s) 856, 1003
AvaI CYCGRG 1 cut(s) 518
AvaII GGWCC 1 cut(s) 61
BaeGI GKGCMC 1 cut(s) 646
BanI GGYRCC 1 cut(s) 1481
BanII GRGCYC 2 cut(s) 102, 658
BbsI GAAGAC 2 cut(s) 970, 1497
Bbv12I GWGCWC 3 cut(s) 102, 646, 658
BccI CCATC 1 cut(s) 1472
BceAI ACGGC 2 cut(s) 1116, 1697
BciT130I CCWGG 1 cut(s) 1185
BciVI GTATCC 1 cut(s) 320
BclI TGATCA 1 cut(s) 325
BcoDI GTCTC 3 cut(s) 79, 1442, 1543
BfaI CTAG 8 cut(s) 71, 269, 647, 857, 1004, 1076, 1368, 1719
BfmI CTRYAG 3 cut(s) 204, 438, 1734
BfoI RGCGCY 1 cut(s) 560
BfrI CTTAAG 1 cut(s) 341
BfuI GTATCC 1 cut(s) 320
BlpI GCTNAGC 1 cut(s) 731
Bme1390I CCNGG 1 cut(s) 1185
Bme18I GGWCC 1 cut(s) 61
BmeT110I CYCGRG 1 cut(s) 518
BmgT120I GGNCC 1 cut(s) 61
BmiI GGNNCC 1 cut(s) 1483
BmrFI CCNGG 1 cut(s) 1185
BmsI GCATC 4 cut(s) 406, 972, 1632, 1651
BmtI GCTAGC 2 cut(s) 860, 1007
BpiI GAAGAC 2 cut(s) 970, 1497
BplI GAGNNNNNCTC 4 cut(s) 48, 80, 50, 82
BpmI CTGGAG 3 cut(s) 792, 866, 1308
Bpu10I CCTNAGC 1 cut(s) 153
Bpu1102I GCTNAGC 1 cut(s) 731
BpuEI CTTGAG 5 cut(s) 638, 710, 773, 1028, 1052
BsaAI YACGTR 1 cut(s) 25
BsaBI GATNNNNATC 1 cut(s) 324
BsaI GGTCTC 1 cut(s) 1543
BsaJI CCNNGG 3 cut(s) 1026, 1183, 1677
BsaXI ACNNNNNCTCC 2 cut(s) 1579, 1609
Bsc4I CCNNNNNNNGG 2 cut(s) 142, 1262
Bse1I ACTGG 1 cut(s) 1155
Bse3DI GCAATG 2 cut(s) 507, 1273
Bse8I GATNNNNATC 1 cut(s) 324
BseBI CCWGG 1 cut(s) 1185
BseDI CCNNGG 3 cut(s) 1026, 1183, 1677
BseGI GGATG 5 cut(s) 244, 373, 484, 922, 1756
BseJI GATNNNNATC 1 cut(s) 324
BseLI CCNNNNNNNGG 2 cut(s) 142, 1262
BseMI GCAATG 2 cut(s) 507, 1273
BseMII CTCAG 5 cut(s) 167, 187, 1337, 1554, 1574
BseNI ACTGG 1 cut(s) 1155
BseRI GAGGAG 9 cut(s) 60, 63, 66, 69, 504, 686, 770, 1233, 1600
BseSI GKGCMC 1 cut(s) 646
BsgI GTGCAG 1 cut(s) 411
Bsh1236I CGCG 1 cut(s) 138
BshFI GGCC 1 cut(s) 761
BshNI GGYRCC 1 cut(s) 1481
BsiHKAI GWGCWC 3 cut(s) 102, 646, 658
BsiHKCI CYCGRG 1 cut(s) 518
BslI CCNNNNNNNGG 2 cut(s) 142, 1262
BsmAI GTCTC 3 cut(s) 79, 1442, 1543
BsmI GAATGC 2 cut(s) 1420, 1624
BsnI GGCC 1 cut(s) 761
Bso31I GGTCTC 1 cut(s) 1543
BsoBI CYCGRG 1 cut(s) 518
Bsp1286I GDGCHC 3 cut(s) 102, 646, 658
Bsp143I GATC 4 cut(s) 162, 325, 1202, 1301
Bsp1720I GCTNAGC 1 cut(s) 731
Bsp19I CCATGG 1 cut(s) 1677
BspACI CCGC 3 cut(s) 8, 78, 136
BspANI GGCC 1 cut(s) 761
BspCNI CTCAG 5 cut(s) 166, 186, 1338, 1553, 1575
BspFNI CGCG 1 cut(s) 138
BspHI TCATGA 1 cut(s) 13
BspLI GGNNCC 1 cut(s) 1483
BspMAI CTGCAG 2 cut(s) 442, 1738
BspOI GCTAGC 2 cut(s) 860, 1007
BspQI GCTCTTC 2 cut(s) 204, 618
BspT107I GGYRCC 1 cut(s) 1481
BspTI CTTAAG 1 cut(s) 341
BspTNI GGTCTC 1 cut(s) 1543
BsrDI GCAATG 2 cut(s) 507, 1273
BsrI ACTGG 1 cut(s) 1155
BssECI CCNNGG 3 cut(s) 1026, 1183, 1677
BssMI GATC 4 cut(s) 162, 325, 1202, 1301
BssT1I CCWWGG 2 cut(s) 1026, 1677
Bst2UI CCWGG 1 cut(s) 1185
Bst4CI ACNGT 4 cut(s) 895, 948, 1453, 1520
Bst6I CTCTTC 7 cut(s) 204, 404, 618, 663, 825, 830, 951
BstAFI CTTAAG 1 cut(s) 341
BstAPI GCANNNNNTGC 2 cut(s) 425, 434
BstBAI YACGTR 1 cut(s) 25
BstC8I GCNNGC 4 cut(s) 858, 975, 1005, 1741
BstDSI CCRYGG 1 cut(s) 1677
BstF5I GGATG 5 cut(s) 244, 373, 484, 922, 1756
BstFNI CGCG 1 cut(s) 138
BstH2I RGCGCY 1 cut(s) 560
BstHHI GCGC 1 cut(s) 559
BstKTI GATC 4 cut(s) 165, 328, 1205, 1304
BstMAI GTCTC 3 cut(s) 79, 1442, 1543
BstMBI GATC 4 cut(s) 162, 325, 1202, 1301
BstMWI GCNNNNNNNGC 8 cut(s) 176, 425, 434, 443, 767, 776, 788, 1283
BstNI CCWGG 1 cut(s) 1185
BstNSI RCATGY 2 cut(s) 35, 1097
BstSCI CCNGG 1 cut(s) 1183
BstSFI CTRYAG 3 cut(s) 204, 438, 1734
BstSLI GKGCMC 1 cut(s) 646
BstUI CGCG 1 cut(s) 138
BstV2I GAAGAC 2 cut(s) 970, 1497
BstXI CCANNNNNNTGG 1 cut(s) 1684
BsuI GTATCC 1 cut(s) 320
BsuRI GGCC 1 cut(s) 761
BtgI CCRYGG 1 cut(s) 1677
BtsCI GGATG 5 cut(s) 244, 373, 484, 922, 1756
BtsIMutI CAGTG 2 cut(s) 953, 1664
Cac8I GCNNGC 4 cut(s) 858, 975, 1005, 1741
CaiI CAGNNNCTG 3 cut(s) 86, 952, 1457
CciI TCATGA 1 cut(s) 13
CfoI GCGC 1 cut(s) 559
Cfr13I GGNCC 1 cut(s) 61
Csp6I GTAC 2 cut(s) 26, 461
CviAII CATG 5 cut(s) 14, 32, 827, 1094, 1678
CviQI GTAC 2 cut(s) 26, 461
DpnI GATC 4 cut(s) 164, 327, 1204, 1303
DpnII GATC 4 cut(s) 162, 325, 1202, 1301
DraI TTTAAA 1 cut(s) 1315
DrdI GACNNNNNNGTC 1 cut(s) 89
DseDI GACNNNNNNGTC 1 cut(s) 89
Eam1104I CTCTTC 7 cut(s) 204, 404, 618, 663, 825, 830, 951
EarI CTCTTC 7 cut(s) 204, 404, 618, 663, 825, 830, 951
Ecl136II GAGCTC 2 cut(s) 100, 656
Eco130I CCWWGG 2 cut(s) 1026, 1677
Eco24I GRGCYC 2 cut(s) 102, 658
Eco31I GGTCTC 1 cut(s) 1543
Eco47I GGWCC 1 cut(s) 61
Eco47III AGCGCT 1 cut(s) 558
Eco53kI GAGCTC 2 cut(s) 100, 656
Eco57I CTGAAG 3 cut(s) 204, 545, 1076
Eco88I CYCGRG 1 cut(s) 518
EcoICRI GAGCTC 2 cut(s) 100, 656
EcoO109I RGGNCCY 1 cut(s) 61
EcoRII CCWGG 1 cut(s) 1183
EcoT14I CCWWGG 2 cut(s) 1026, 1677
EcoT22I ATGCAT 1 cut(s) 421
EcoT38I GRGCYC 2 cut(s) 102, 658
ErhI CCWWGG 2 cut(s) 1026, 1677
FaeI CATG 5 cut(s) 17, 35, 830, 1097, 1681
FalI AAGNNNNNCTT 4 cut(s) 335, 367, 435, 467
FatI CATG 5 cut(s) 13, 31, 826, 1093, 1677
FbaI TGATCA 1 cut(s) 325
FokI GGATG 5 cut(s) 251, 380, 491, 929, 1763
FriOI GRGCYC 2 cut(s) 102, 658
FspBI CTAG 8 cut(s) 71, 269, 647, 857, 1004, 1076, 1368, 1719
GlaI GCGC 1 cut(s) 558
GsuI CTGGAG 3 cut(s) 792, 866, 1308
HaeII RGCGCY 1 cut(s) 560
HaeIII GGCC 1 cut(s) 761
HhaI GCGC 1 cut(s) 559
Hin1II CATG 5 cut(s) 17, 35, 830, 1097, 1681
Hin6I GCGC 1 cut(s) 557
HinP1I GCGC 1 cut(s) 557
HindIII AAGCTT 2 cut(s) 728, 1354
HinfI GANTC 8 cut(s) 500, 588, 605, 684, 841, 1072, 1493, 1688
HphI GGTGA 4 cut(s) 170, 583, 1403, 1488
Hpy166II GTNNAC 2 cut(s) 463, 644
Hpy188I TCNGA 5 cut(s) 176, 367, 1015, 1176, 1584
Hpy8I GTNNAC 2 cut(s) 463, 644
HpyAV CCTTC 5 cut(s) 450, 501, 907, 1076, 1390
HpyCH4III ACNGT 4 cut(s) 895, 948, 1453, 1520
HpyCH4IV ACGT 2 cut(s) 24, 988
HpyF10VI GCNNNNNNNGC 8 cut(s) 176, 425, 434, 443, 767, 776, 788, 1283
HpySE526I ACGT 2 cut(s) 24, 988
Hsp92II CATG 5 cut(s) 17, 35, 830, 1097, 1681
HspAI GCGC 1 cut(s) 557
Ksp22I TGATCA 1 cut(s) 325
Kzo9I GATC 4 cut(s) 162, 325, 1202, 1301
LguI GCTCTTC 2 cut(s) 204, 618
LmnI GCTCC 2 cut(s) 517, 853
LweI GCATC 4 cut(s) 406, 972, 1632, 1651
MaeI CTAG 8 cut(s) 71, 269, 647, 857, 1004, 1076, 1368, 1719
MaeII ACGT 2 cut(s) 24, 988
MaeIII GTNAC 4 cut(s) 336, 797, 1157, 1453
MalI GATC 4 cut(s) 164, 327, 1204, 1303
MboI GATC 4 cut(s) 162, 325, 1202, 1301
MhlI GDGCHC 3 cut(s) 102, 646, 658
MluCI AATT 4 cut(s) 387, 821, 1120, 1258
MlyI GAGTC 6 cut(s) 582, 614, 835, 1066, 1487, 1697
MmeI TCCRAC 2 cut(s) 384, 1273
Mph1103I ATGCAT 1 cut(s) 421
MseI TTAA 7 cut(s) 315, 342, 390, 942, 1088, 1314, 1515
MslI CAYNNNNRTG 1 cut(s) 1682
MspCI CTTAAG 1 cut(s) 341
MspR9I CCNGG 1 cut(s) 1185
Mva1269I GAATGC 2 cut(s) 1420, 1624
MvaI CCWGG 1 cut(s) 1185
MvnI CGCG 1 cut(s) 138
MwoI GCNNNNNNNGC 8 cut(s) 176, 425, 434, 443, 767, 776, 788, 1283
NcoI CCATGG 1 cut(s) 1677
NdeII GATC 4 cut(s) 162, 325, 1202, 1301
NheI GCTAGC 2 cut(s) 856, 1003
NlaIII CATG 5 cut(s) 17, 35, 830, 1097, 1681
NlaIV GGNNCC 1 cut(s) 1483
NmuCI GTSAC 1 cut(s) 797
NsiI ATGCAT 1 cut(s) 421
NspI RCATGY 2 cut(s) 35, 1097
PaeR7I CTCGAG 1 cut(s) 518
PagI TCATGA 1 cut(s) 13
PciSI GCTCTTC 2 cut(s) 204, 618
PctI GAATGC 2 cut(s) 1420, 1624
PfeI GAWTC 2 cut(s) 500, 684
PleI GAGTC 6 cut(s) 582, 613, 835, 1066, 1487, 1696
PpsI GAGTC 6 cut(s) 582, 613, 835, 1066, 1487, 1696
Ppu21I YACGTR 1 cut(s) 25
PpuMI RGGWCCY 1 cut(s) 61
Psp124BI GAGCTC 2 cut(s) 102, 658
Psp1406I AACGTT 1 cut(s) 988
Psp5II RGGWCCY 1 cut(s) 61
Psp6I CCWGG 1 cut(s) 1183
PspGI CCWGG 1 cut(s) 1183
PspN4I GGNNCC 1 cut(s) 1483
PspPI GGNCC 1 cut(s) 61
PspPPI RGGWCCY 1 cut(s) 61
PsrI GAACNNNNNNTAC 2 cut(s) 9, 41
PstI CTGCAG 2 cut(s) 442, 1738
PstNI CAGNNNCTG 3 cut(s) 86, 952, 1457
RsaI GTAC 2 cut(s) 27, 462
RsaNI GTAC 2 cut(s) 26, 461
RseI CAYNNNNRTG 1 cut(s) 1682
SacI GAGCTC 2 cut(s) 102, 658
SapI GCTCTTC 2 cut(s) 204, 618
SaqAI TTAA 7 cut(s) 315, 342, 390, 942, 1088, 1314, 1515
Sau3AI GATC 4 cut(s) 162, 325, 1202, 1301
Sau96I GGNCC 1 cut(s) 61
SchI GAGTC 6 cut(s) 582, 614, 835, 1066, 1487, 1697
ScrFI CCNGG 1 cut(s) 1185
SduI GDGCHC 3 cut(s) 102, 646, 658
SfaNI GCATC 4 cut(s) 406, 972, 1632, 1651
SfcI CTRYAG 3 cut(s) 204, 438, 1734
Sfr274I CTCGAG 1 cut(s) 518
SinI GGWCC 1 cut(s) 61
SlaI CTCGAG 1 cut(s) 518
SmiMI CAYNNNNRTG 1 cut(s) 1682
SmlI CTYRAG 7 cut(s) 341, 518, 617, 689, 752, 1043, 1067
SmoI CTYRAG 7 cut(s) 341, 518, 617, 689, 752, 1043, 1067
Sse9I AATT 4 cut(s) 387, 821, 1120, 1258
SsiI CCGC 3 cut(s) 8, 78, 136
SspMI CTAG 8 cut(s) 71, 269, 647, 857, 1004, 1076, 1368, 1719
SstI GAGCTC 2 cut(s) 102, 658
StyD4I CCNGG 1 cut(s) 1183
StyI CCWWGG 2 cut(s) 1026, 1677
TaaI ACNGT 4 cut(s) 895, 948, 1453, 1520
TaiI ACGT 2 cut(s) 27, 991
TaqI TCGA 2 cut(s) 519, 599
TasI AATT 4 cut(s) 387, 821, 1120, 1258
TauI GCSGC 1 cut(s) 138
TfiI GAWTC 2 cut(s) 500, 684
Tru1I TTAA 7 cut(s) 315, 342, 390, 942, 1088, 1314, 1515
Tru9I TTAA 7 cut(s) 315, 342, 390, 942, 1088, 1314, 1515
TscAI CASTG 2 cut(s) 953, 1671
TseFI GTSAC 1 cut(s) 797
Tsp45I GTSAC 1 cut(s) 797
TspRI CASTG 2 cut(s) 953, 1671
Vha464I CTTAAG 1 cut(s) 341
VneI GTGCAC 1 cut(s) 642
VpaK11BI GGWCC 1 cut(s) 61
XapI RAATTY 1 cut(s) 1258
XbaI TCTAGA 3 cut(s) 268, 1075, 1367
XceI RCATGY 2 cut(s) 35, 1097
XhoI CTCGAG 1 cut(s) 518
XspI CTAG 8 cut(s) 71, 269, 647, 857, 1004, 1076, 1368, 1719
Zsp2I ATGCAT 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.