Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0015178

Physical Location & Seq

Genomic Coordinates Reverse (-)

388192 .. 390185

Gene Structure 1994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG005900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGTGGCGGGTCATGAACAACACGTACAACATGCAGCAGGGGGAGGAGGAGGAGAGGACCTCTCTCTTGTCTCCGCAGACCCTGTTGTCTTAGAGCTCAATCGTATGCAGAACCTACTCAAAGAAAAGAGCCGCGAGTTGGGGATTGCTCAGGGTGAGATCAAGGCTCTCAGAGCTACTGAAGTTCTAAAGGATAAAGCTGTAGAAGAGCTAAGTAATGAAGTAGAGAAGCTGGATGAGAAACATAGGCTCACGCAAAATCTTCTAGAGCATAAGAACCTTGAAATTAAGAAACTAACAGATGAGAAGAGAGATGCATTAGCTGCACAATATGCTGCAGAAGCAACTCTTAGAAGGGTACACACAAATCAAAAGGATGACGAACTTCCTTCTCTTGAATCTGTCATTGCTCCTCTCGAGGCTGAAATCAAAATGTGCAAGAATGAGATTGCAGCGCTTCAGGAGGACAATAAGGCTTTGGAACGACTCACCAAGTCGAAAGAGTCGGCTCTTCTTGAGGCAGAAAGGATATTGCGAAGTGCACTAGAAAGAGCTCTAATAGTTGAAGAGGTCCAAAACCACAACTTCGAATTGAGGAGACAAATTGAAATCTACCAGGAGGAAAACAGAATCCTTGAGAAAACAAATCGTCAAAAGGTTTTAGAGGTTGAAAAGCTTAGCCAAACCATTCAAGAACTTGAGGAGGCCATTTTAGCTGGAGGGGCTGCTGCCAATGCTATTCGTGACTACAAAAGACAGATAGATGAATTACATGAAGAGAAGAGGACTCTGGAGAGGGAGCTAGCAAGAGTGAAAGTTTCTGCAAACCGAGTAGCTACTGTTATTGCTAACGAGTGGAAGGATGAAAACGACAAAGTTATGCCTGTTAAACAGTGGCTGGAAGAGAGAAGACTTATGCAGGCAGAGATGCAACGTTTGAGGGAGAAGCTAGCAATCTCGGATAGAACAGCCAAGGCAGAGGCACAACTCAAGGTGAAGTTTTCATACAAATACAAAACTAAAAATCTACGAGTCACTTCTCTGAACATATTTTATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005874 GO:0006996 GO:0007010 GO:0007275 GO:0007389 GO:0008017 GO:0008092 GO:0008150 GO:0009832 GO:0009987 GO:0010051 GO:0015630 GO:0015631 GO:0016043 GO:0032501 GO:0032502 GO:0042546 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048856 GO:0071554 GO:0071669 GO:0071840 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MAP70

Protein Analysis

353

Amino Acids

40.55

Weight (kDa)

6.05

Isoelectric Point (pI)

45.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MAP70	PF07058	23 - 340	1.4e-166	Microtubule-associated protein 70

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015178)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17220
fragaria_vesca	FvH4_3g00480 FvH4_3g00480
malus_domestica	MD00G1056800.v1.1
prunus_persica	Prupe.4G005400_v2.0.a1
pyrus_communis	pycom05g32710
rosa_chinensis	RchiOBHm_Chr5g0000651
rosa_laevigata	RLG00000030885
rosa_multiflora	Rmu_sc0011992.1_g000012
rosa_roxburghii	Rroxscaffold_1G00075550
rosa_rugosa	Rorug04G0385500
rosa_samantha	Rh5AG005300 Rh5BG006900 Rh5CG005900 Rh5DG005800
rosa_wichuraiana	Rw5G000550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	86
AccII	CGCG	1 cut(s)	135
AciI	CCGC	3 cut(s)	8, 75, 133
AclI	AACGTT	1 cut(s)	934
AcuI	CTGAAG	2 cut(s)	201, 443
AfaI	GTAC	2 cut(s)	27, 360
AfeI	AGCGCT	1 cut(s)	456
AfiI	CCNNNNNNNGG	1 cut(s)	139
AflIII	ACRYGT	1 cut(s)	22
AgsI	TTSAA	6 cut(s)	284, 398, 566, 608, 671, 692
AjnI	CCWGG	1 cut(s)	615
Alw21I	GWGCWC	3 cut(s)	99, 544, 556
Alw26I	GTCTC	2 cut(s)	76, 592
Alw44I	GTGCAC	1 cut(s)	540
AlwNI	CAGNNNCTG	2 cut(s)	83, 898
Ama87I	CYCGRG	1 cut(s)	416
Aor51HI	AGCGCT	1 cut(s)	456
AoxI	GGCC	1 cut(s)	705
ApaLI	GTGCAC	1 cut(s)	540
ApeKI	GCWGC	6 cut(s)	35, 323, 335, 452, 725, 728
AspLEI	GCGC	1 cut(s)	457
AspS9I	GGNCC	2 cut(s)	58, 571
AsuHPI	GGTGA	3 cut(s)	167, 481, 1006
AsuII	TTCGAA	1 cut(s)	588
AsuNHI	GCTAGC	2 cut(s)	802, 949
AvaI	CYCGRG	1 cut(s)	416
AvaII	GGWCC	2 cut(s)	58, 571
BaeGI	GKGCMC	1 cut(s)	544
BanII	GRGCYC	2 cut(s)	99, 556
BarI	GAAGNNNNNNTAC	2 cut(s)	989, 1021
BbsI	GAAGAC	1 cut(s)	916
Bbv12I	GWGCWC	3 cut(s)	99, 544, 556
BbvI	GCAGC	6 cut(s)	47, 310, 322, 464, 712, 715
BciT130I	CCWGG	1 cut(s)	617
BcoDI	GTCTC	2 cut(s)	76, 592
BfaI	CTAG	4 cut(s)	266, 545, 803, 950
BfmI	CTRYAG	2 cut(s)	201, 336
BfoI	RGCGCY	1 cut(s)	458
BisI	GCNGC	7 cut(s)	36, 133, 324, 336, 453, 726, 729
BlpI	GCTNAGC	1 cut(s)	677
BlsI	GCNGC	7 cut(s)	37, 134, 325, 337, 454, 727, 730
Bme1390I	CCNGG	1 cut(s)	617
Bme18I	GGWCC	2 cut(s)	58, 571
BmeT110I	CYCGRG	1 cut(s)	416
BmgT120I	GGNCC	2 cut(s)	58, 571
BmrFI	CCNGG	1 cut(s)	617
BmsI	GCATC	2 cut(s)	304, 918
BmtI	GCTAGC	2 cut(s)	806, 953
BpiI	GAAGAC	1 cut(s)	916
BplI	GAGNNNNNCTC	4 cut(s)	45, 77, 47, 79
BpmI	CTGGAG	2 cut(s)	738, 812
Bpu10I	CCTNAGC	1 cut(s)	150
Bpu1102I	GCTNAGC	1 cut(s)	677
Bpu14I	TTCGAA	1 cut(s)	588
BpuEI	CTTGAG	4 cut(s)	536, 656, 719, 974
BsaAI	YACGTR	1 cut(s)	25
BsaJI	CCNNGG	1 cut(s)	972
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
Bse3DI	GCAATG	1 cut(s)	405
BseBI	CCWGG	1 cut(s)	617
BseDI	CCNNGG	1 cut(s)	972
BseGI	GGATG	3 cut(s)	241, 382, 868
BseLI	CCNNNNNNNGG	1 cut(s)	139
BseMI	GCAATG	1 cut(s)	405
BseMII	CTCAG	2 cut(s)	164, 184
BseRI	GAGGAG	6 cut(s)	60, 63, 66, 402, 610, 716
BseSI	GKGCMC	1 cut(s)	544
BseXI	GCAGC	6 cut(s)	47, 310, 322, 464, 712, 715
BsgI	GTGCAG	1 cut(s)	309
Bsh1236I	CGCG	1 cut(s)	135
BshFI	GGCC	1 cut(s)	707
BsiHKAI	GWGCWC	3 cut(s)	99, 544, 556
BsiHKCI	CYCGRG	1 cut(s)	416
BslI	CCNNNNNNNGG	1 cut(s)	139
BsmAI	GTCTC	2 cut(s)	76, 592
BsnI	GGCC	1 cut(s)	707
BsoBI	CYCGRG	1 cut(s)	416
Bsp119I	TTCGAA	1 cut(s)	588
Bsp1286I	GDGCHC	3 cut(s)	99, 544, 556
Bsp143I	GATC	1 cut(s)	159
Bsp1720I	GCTNAGC	1 cut(s)	677
BspACI	CCGC	3 cut(s)	8, 75, 133
BspANI	GGCC	1 cut(s)	707
BspCNI	CTCAG	2 cut(s)	163, 183
BspFNI	CGCG	1 cut(s)	135
BspHI	TCATGA	1 cut(s)	13
BspMAI	CTGCAG	1 cut(s)	340
BspOI	GCTAGC	2 cut(s)	806, 953
BspQI	GCTCTTC	2 cut(s)	201, 516
BspT104I	TTCGAA	1 cut(s)	588
BsrDI	GCAATG	1 cut(s)	405
BssECI	CCNNGG	1 cut(s)	972
BssMI	GATC	1 cut(s)	159
BssT1I	CCWWGG	1 cut(s)	972
Bst2UI	CCWGG	1 cut(s)	617
Bst4CI	ACNGT	2 cut(s)	841, 894
Bst6I	CTCTTC	7 cut(s)	201, 302, 516, 561, 771, 776, 897
BstAPI	GCANNNNNTGC	2 cut(s)	323, 332
BstBAI	YACGTR	1 cut(s)	25
BstBI	TTCGAA	1 cut(s)	588
BstC8I	GCNNGC	3 cut(s)	804, 921, 951
BstDEI	CTNAG	6 cut(s)	91, 150, 170, 212, 350, 677
BstF5I	GGATG	3 cut(s)	241, 382, 868
BstFNI	CGCG	1 cut(s)	135
BstH2I	RGCGCY	1 cut(s)	458
BstHHI	GCGC	1 cut(s)	457
BstKTI	GATC	1 cut(s)	162
BstMAI	GTCTC	2 cut(s)	76, 592
BstMBI	GATC	1 cut(s)	159
BstMWI	GCNNNNNNNGC	7 cut(s)	173, 323, 332, 341, 713, 722, 734
BstNI	CCWGG	1 cut(s)	617
BstNSI	RCATGY	1 cut(s)	35
BstSCI	CCNGG	1 cut(s)	615
BstSFI	CTRYAG	2 cut(s)	201, 336
BstSLI	GKGCMC	1 cut(s)	544
BstUI	CGCG	1 cut(s)	135
BstV1I	GCAGC	6 cut(s)	47, 310, 322, 464, 712, 715
BstV2I	GAAGAC	1 cut(s)	916
BsuRI	GGCC	1 cut(s)	707
BtsCI	GGATG	3 cut(s)	241, 382, 868
BtsIMutI	CAGTG	1 cut(s)	899
Cac8I	GCNNGC	3 cut(s)	804, 921, 951
CaiI	CAGNNNCTG	2 cut(s)	83, 898
CciI	TCATGA	1 cut(s)	13
CfoI	GCGC	1 cut(s)	457
Cfr13I	GGNCC	2 cut(s)	58, 571
Csp6I	GTAC	2 cut(s)	26, 359
CviAII	CATG	3 cut(s)	14, 32, 773
CviQI	GTAC	2 cut(s)	26, 359
DdeI	CTNAG	6 cut(s)	91, 150, 170, 212, 350, 677
DpnI	GATC	1 cut(s)	161
DpnII	GATC	1 cut(s)	159
DrdI	GACNNNNNNGTC	1 cut(s)	86
DseDI	GACNNNNNNGTC	1 cut(s)	86
Eam1104I	CTCTTC	7 cut(s)	201, 302, 516, 561, 771, 776, 897
EarI	CTCTTC	7 cut(s)	201, 302, 516, 561, 771, 776, 897
Ecl136II	GAGCTC	2 cut(s)	97, 554
Eco130I	CCWWGG	1 cut(s)	972
Eco24I	GRGCYC	2 cut(s)	99, 556
Eco47I	GGWCC	2 cut(s)	58, 571
Eco47III	AGCGCT	1 cut(s)	456
Eco53kI	GAGCTC	2 cut(s)	97, 554
Eco57I	CTGAAG	2 cut(s)	201, 443
Eco88I	CYCGRG	1 cut(s)	416
EcoICRI	GAGCTC	2 cut(s)	97, 554
EcoO109I	RGGNCCY	1 cut(s)	58
EcoRII	CCWGG	1 cut(s)	615
EcoT14I	CCWWGG	1 cut(s)	972
EcoT22I	ATGCAT	1 cut(s)	319
EcoT38I	GRGCYC	2 cut(s)	99, 556
ErhI	CCWWGG	1 cut(s)	972
FaeI	CATG	3 cut(s)	17, 35, 776
FalI	AAGNNNNNCTT	2 cut(s)	333, 365
FatI	CATG	3 cut(s)	13, 31, 772
Fnu4HI	GCNGC	7 cut(s)	36, 133, 324, 336, 453, 726, 729
FokI	GGATG	3 cut(s)	248, 389, 875
FriOI	GRGCYC	2 cut(s)	99, 556
Fsp4HI	GCNGC	7 cut(s)	36, 133, 324, 336, 453, 726, 729
FspBI	CTAG	4 cut(s)	266, 545, 803, 950
GlaI	GCGC	1 cut(s)	456
GluI	GCNGC	7 cut(s)	36, 133, 324, 336, 453, 726, 729
GsuI	CTGGAG	2 cut(s)	738, 812
HaeII	RGCGCY	1 cut(s)	458
HaeIII	GGCC	1 cut(s)	707
HhaI	GCGC	1 cut(s)	457
Hin1II	CATG	3 cut(s)	17, 35, 776
Hin6I	GCGC	1 cut(s)	455
HinP1I	GCGC	1 cut(s)	455
HindIII	AAGCTT	1 cut(s)	674
HinfI	GANTC	6 cut(s)	398, 486, 503, 630, 787, 1032
HphI	GGTGA	3 cut(s)	167, 481, 1006
Hpy166II	GTNNAC	2 cut(s)	361, 542
Hpy188I	TCNGA	3 cut(s)	173, 961, 1044
Hpy188III	TCNNGA	9 cut(s)	14, 266, 395, 416, 461, 515, 692, 743, 791
Hpy8I	GTNNAC	2 cut(s)	361, 542
HpyAV	CCTTC	3 cut(s)	348, 399, 853
HpyCH4III	ACNGT	2 cut(s)	841, 894
HpyCH4IV	ACGT	2 cut(s)	24, 934
HpyF10VI	GCNNNNNNNGC	7 cut(s)	173, 323, 332, 341, 713, 722, 734
HpyF3I	CTNAG	6 cut(s)	91, 150, 170, 212, 350, 677
HpySE526I	ACGT	2 cut(s)	24, 934
Hsp92II	CATG	3 cut(s)	17, 35, 776
HspAI	GCGC	1 cut(s)	455
Kzo9I	GATC	1 cut(s)	159
LguI	GCTCTTC	2 cut(s)	201, 516
LmnI	GCTCC	2 cut(s)	415, 799
Lsp1109I	GCAGC	6 cut(s)	47, 310, 322, 464, 712, 715
LweI	GCATC	2 cut(s)	304, 918
MaeI	CTAG	4 cut(s)	266, 545, 803, 950
MaeII	ACGT	2 cut(s)	24, 934
MaeIII	GTNAC	2 cut(s)	743, 1033
MalI	GATC	1 cut(s)	161
MboI	GATC	1 cut(s)	159
MboII	GAAGA	9 cut(s)	218, 254, 319, 503, 578, 788, 793, 914, 921
MhlI	GDGCHC	3 cut(s)	99, 544, 556
MluCI	AATT	4 cut(s)	285, 590, 603, 767
MlyI	GAGTC	4 cut(s)	480, 512, 781, 1041
Mph1103I	ATGCAT	1 cut(s)	319
MseI	TTAA	2 cut(s)	288, 888
MspR9I	CCNGG	1 cut(s)	617
MvaI	CCWGG	1 cut(s)	617
MvnI	CGCG	1 cut(s)	135
MwoI	GCNNNNNNNGC	7 cut(s)	173, 323, 332, 341, 713, 722, 734
NdeII	GATC	1 cut(s)	159
NheI	GCTAGC	2 cut(s)	802, 949
NlaIII	CATG	3 cut(s)	17, 35, 776
NmuCI	GTSAC	2 cut(s)	743, 1033
NsiI	ATGCAT	1 cut(s)	319
NspI	RCATGY	1 cut(s)	35
NspV	TTCGAA	1 cut(s)	588
PaeR7I	CTCGAG	1 cut(s)	416
PagI	TCATGA	1 cut(s)	13
PciSI	GCTCTTC	2 cut(s)	201, 516
PfeI	GAWTC	2 cut(s)	398, 630
PkrI	GCNGC	7 cut(s)	37, 134, 325, 337, 454, 727, 730
PleI	GAGTC	4 cut(s)	480, 511, 781, 1040
PpsI	GAGTC	4 cut(s)	480, 511, 781, 1040
Ppu21I	YACGTR	1 cut(s)	25
PpuMI	RGGWCCY	1 cut(s)	58
Psp124BI	GAGCTC	2 cut(s)	99, 556
Psp1406I	AACGTT	1 cut(s)	934
Psp5II	RGGWCCY	1 cut(s)	58
Psp6I	CCWGG	1 cut(s)	615
PspGI	CCWGG	1 cut(s)	615
PspPI	GGNCC	2 cut(s)	58, 571
PspPPI	RGGWCCY	1 cut(s)	58
PsrI	GAACNNNNNNTAC	2 cut(s)	9, 41
PstI	CTGCAG	1 cut(s)	340
PstNI	CAGNNNCTG	2 cut(s)	83, 898
RsaI	GTAC	2 cut(s)	27, 360
RsaNI	GTAC	2 cut(s)	26, 359
SacI	GAGCTC	2 cut(s)	99, 556
SapI	GCTCTTC	2 cut(s)	201, 516
SaqAI	TTAA	2 cut(s)	288, 888
SatI	GCNGC	7 cut(s)	36, 133, 324, 336, 453, 726, 729
Sau3AI	GATC	1 cut(s)	159
Sau96I	GGNCC	2 cut(s)	58, 571
SchI	GAGTC	4 cut(s)	480, 512, 781, 1041
ScrFI	CCNGG	1 cut(s)	617
SduI	GDGCHC	3 cut(s)	99, 544, 556
SfaNI	GCATC	2 cut(s)	304, 918
SfcI	CTRYAG	2 cut(s)	201, 336
Sfr274I	CTCGAG	1 cut(s)	416
SfuI	TTCGAA	1 cut(s)	588
SinI	GGWCC	2 cut(s)	58, 571
SlaI	CTCGAG	1 cut(s)	416
SmlI	CTYRAG	5 cut(s)	416, 515, 635, 698, 989
SmoI	CTYRAG	5 cut(s)	416, 515, 635, 698, 989
Sse9I	AATT	4 cut(s)	285, 590, 603, 767
SsiI	CCGC	3 cut(s)	8, 75, 133
SspMI	CTAG	4 cut(s)	266, 545, 803, 950
SstI	GAGCTC	2 cut(s)	99, 556
StyD4I	CCNGG	1 cut(s)	615
StyI	CCWWGG	1 cut(s)	972
TaaI	ACNGT	2 cut(s)	841, 894
TaiI	ACGT	2 cut(s)	27, 937
TaqI	TCGA	3 cut(s)	417, 497, 588
TasI	AATT	4 cut(s)	285, 590, 603, 767
TauI	GCSGC	1 cut(s)	135
TfiI	GAWTC	2 cut(s)	398, 630
Tru1I	TTAA	2 cut(s)	288, 888
Tru9I	TTAA	2 cut(s)	288, 888
TscAI	CASTG	1 cut(s)	899
TseFI	GTSAC	2 cut(s)	743, 1033
TseI	GCWGC	6 cut(s)	35, 323, 335, 452, 725, 728
Tsp45I	GTSAC	2 cut(s)	743, 1033
TspDTI	ATGAA	6 cut(s)	30, 234, 780, 789, 879, 993
TspRI	CASTG	1 cut(s)	899
VneI	GTGCAC	1 cut(s)	540
VpaK11BI	GGWCC	2 cut(s)	58, 571
XbaI	TCTAGA	1 cut(s)	265
XceI	RCATGY	1 cut(s)	35
XhoI	CTCGAG	1 cut(s)	416
XspI	CTAG	4 cut(s)	266, 545, 803, 950
Zsp2I	ATGCAT	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.