Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0015178

Physical Location & Seq

Genomic Coordinates Forward (+)

31997340 .. 31999079

Gene Structure 1740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g32710.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGACTTTGCATCAGATCCTATTTCATTTCTCGAAAATAATTAAGTACGAGTATTCAATCCAATCAATATACCATATGCAGGAGGAAAACAGAATCCTCGAAAAAACAAACCGCCAAAAGGTTTTAGAGGTTGAGAAGCTTAGTCAAACCATTCAGGAACTTGAGGAGGCCGTTTTAGCTGGTGGGGCTGCAGCCAATGCTATTCGTGACTACCAACGACAGGCAGAAGAATTACATGAGGAGAAGAGAACTCTGGAGAGAGAGCTAGCAAGAATTAAAGTTTCAGCAAACCGGGTAGCAACTGTGATTGCTAATGAGTGGAAGGATGACAACGACAAAGTTATGCCCGTGAAACAGTGGCTGGAAGAGAGAAGACTAATGCAGGTATTTCCTGTTCAGGAAAGAAAAGAAAATGCCAAAAACTATAAAATAAAATATTTGAGGACAATTATTGCTTTGCATATGCAGGGAGAGATGCAACGGTTGAGAGACAAACTAGCTATATCGGACAGAACAGCGAAGGCAGAAGCACAACTCAAGGAAAAAATGAAGTTGAGGTTAAAGACGCTCGAGGAAGGGTTAAAGCATGTTTCGAGCTTCTCCTGTAATCCTAATTTATTTTGTGGTTCCCCAAAACCTGAAAAATCTAGTAACTTCTTAGGATTTCTGACAAGCAACGGTGGTTCAGCAAAGAGATCGACATCACAGCCGCGGGGTTCCACTGTCAGTAGAAGCTCTCCACAGCGACAGCCACATTCAGACAACGAAACAGCTGGAGGGCTAAAAAGAGCGACCAGCTTTAGAAAAAAATATGGTTCTGGAGAAAATATGTTGAAGAAAAGCTTATGGGCATCTAGAAGTAAAGTTGTTGATAGCGGTGAAAAGGAGAACACAGAAATGAAGGAAAATACTAATACTGATACTGAAAACAACAATGATAAAACTGCTGCCGCAGACATTAAAGCTGCAGATGGTGGCAATGAGGATTCGCACAACAAGATAAGTACCAACCCTGAAAGTGAGGATATGGTCTCCGGGTTTCTCTACGATAGGCTTCAGAAGGAGGTCCTAAACTTAAGGAAGCATTGCGAAGCCAAGGAGAGCGATATGAATGCTAAAGATGAAGAAATAAAGGTGAAATTAACAACATATTCCCCCCATATGCTGATGAAAAAGGTGGATGCGCTGACAAAAGCCATGGATGTAGAGTTCAAGAAAATGAAGAGAGAAGCAGTGGCTAGAGATAAAGAAACTGCAGCAGCCAAGTATATGGATGAAAACAAAAAGAGCAGAAATATAAACTCCTCTAAACGGTGCGTGACAAATTTGGTCGCAAAAGCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005874 GO:0006996 GO:0007010 GO:0007275 GO:0007389 GO:0008017 GO:0008092 GO:0008150 GO:0009832 GO:0009987 GO:0010051 GO:0015630 GO:0015631 GO:0016043 GO:0032501 GO:0032502 GO:0042546 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048856 GO:0071554 GO:0071669 GO:0071840 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MAP70

Protein Analysis

449

Amino Acids

51.13

Weight (kDa)

9.38

Isoelectric Point (pI)

40.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015178)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17220
fragaria_vesca	FvH4_3g00480 FvH4_3g00480
malus_domestica	MD00G1056800.v1.1
prunus_persica	Prupe.4G005400_v2.0.a1
pyrus_communis	pycom05g32710
rosa_chinensis	RchiOBHm_Chr5g0000651
rosa_laevigata	RLG00000030885
rosa_multiflora	Rmu_sc0011992.1_g000012
rosa_roxburghii	Rroxscaffold_1G00075550
rosa_rugosa	Rorug04G0385500
rosa_samantha	Rh5AG005300 Rh5BG006900 Rh5CG005900 Rh5DG005800
rosa_wichuraiana	Rw5G000550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	373
AccII	CGCG	1 cut(s)	712
AciI	CCGC	5 cut(s)	112, 710, 712, 876, 951
AclWI	GGATC	1 cut(s)	10
AcsI	RAATTY	1 cut(s)	1324
AcuI	CTGAAG	1 cut(s)	1040
AfaI	GTAC	2 cut(s)	47, 1006
AfiI	CCNNNNNNNGG	4 cut(s)	79, 118, 220, 1311
AflII	CTTAAG	1 cut(s)	1075
AgsI	TTSAA	3 cut(s)	57, 835, 1213
AloI	GAACNNNNNNTCC	2 cut(s)	1193, 1225
Alw26I	GTCTC	2 cut(s)	483, 1036
AlwI	GGATC	1 cut(s)	10
AlwNI	CAGNNNCTG	1 cut(s)	361
Ama87I	CYCGRG	1 cut(s)	569
AoxI	GGCC	1 cut(s)	168
ApeKI	GCWGC	6 cut(s)	188, 191, 947, 965, 1256, 1259
ApoI	RAATTY	1 cut(s)	1324
AspLEI	GCGC	1 cut(s)	1186
AspS9I	GGNCC	1 cut(s)	1066
AsuC2I	CCSGG	2 cut(s)	293, 1036
AsuHPI	GGTGA	2 cut(s)	890, 1147
AsuNHI	GCTAGC	1 cut(s)	265
AvaI	CYCGRG	1 cut(s)	569
AvaII	GGWCC	1 cut(s)	1066
BbsI	GAAGAC	1 cut(s)	379
BbvI	GCAGC	6 cut(s)	175, 203, 934, 952, 1268, 1271
BccI	CCATC	1 cut(s)	965
BceAI	ACGGC	1 cut(s)	155
BcgI	CGANNNNNNTGC	4 cut(s)	678, 712, 1094, 1128
BcnI	CCSGG	2 cut(s)	293, 1036
BcoDI	GTCTC	2 cut(s)	483, 1036
BfaI	CTAG	5 cut(s)	266, 497, 648, 855, 1239
BfmI	CTRYAG	3 cut(s)	189, 966, 1254
BfrI	CTTAAG	1 cut(s)	1075
BfuAI	ACCTGC	1 cut(s)	373
BisI	GCNGC	8 cut(s)	189, 192, 710, 948, 951, 966, 1257, 1260
BlsI	GCNGC	8 cut(s)	190, 193, 711, 949, 952, 967, 1258, 1261
Bme1390I	CCNGG	2 cut(s)	293, 1036
Bme18I	GGWCC	1 cut(s)	1066
BmeT110I	CYCGRG	1 cut(s)	569
BmgT120I	GGNCC	1 cut(s)	1066
BmiI	GGNNCC	2 cut(s)	628, 718
BmrFI	CCNGG	2 cut(s)	293, 1036
BmsI	GCATC	4 cut(s)	19, 465, 860, 1171
BmtI	GCTAGC	1 cut(s)	269
BpiI	GAAGAC	1 cut(s)	379
BpmI	CTGGAG	3 cut(s)	275, 795, 840
BpuEI	CTTGAG	2 cut(s)	182, 521
BpuMI	CCSGG	2 cut(s)	293, 1036
BsaBI	GATNNNNATC	1 cut(s)	700
BsaI	GGTCTC	1 cut(s)	1036
BsaJI	CCNNGG	3 cut(s)	710, 1095, 1197
Bsc4I	CCNNNNNNNGG	4 cut(s)	79, 118, 220, 1311
Bse3DI	GCAATG	2 cut(s)	985, 1084
Bse8I	GATNNNNATC	1 cut(s)	700
BseDI	CCNNGG	3 cut(s)	710, 1095, 1197
BseGI	GGATG	4 cut(s)	331, 1186, 1207, 1279
BseJI	GATNNNNATC	1 cut(s)	700
BseLI	CCNNNNNNNGG	4 cut(s)	79, 118, 220, 1311
BseMI	GCAATG	2 cut(s)	985, 1084
BseRI	GAGGAG	3 cut(s)	179, 254, 1294
BseXI	GCAGC	6 cut(s)	175, 203, 934, 952, 1268, 1271
Bsh1236I	CGCG	1 cut(s)	712
BshFI	GGCC	1 cut(s)	170
BsiHKCI	CYCGRG	1 cut(s)	569
BsiSI	CCGG	2 cut(s)	292, 1035
BslI	CCNNNNNNNGG	4 cut(s)	79, 118, 220, 1311
BsmAI	GTCTC	2 cut(s)	483, 1036
BsmI	GAATGC	1 cut(s)	1117
BsnI	GGCC	1 cut(s)	170
Bso31I	GGTCTC	1 cut(s)	1036
BsoBI	CYCGRG	1 cut(s)	569
Bsp143I	GATC	2 cut(s)	15, 695
Bsp19I	CCATGG	1 cut(s)	1197
BspACI	CCGC	5 cut(s)	112, 710, 712, 876, 951
BspANI	GGCC	1 cut(s)	170
BspFNI	CGCG	1 cut(s)	712
BspLI	GGNNCC	2 cut(s)	628, 718
BspMAI	CTGCAG	3 cut(s)	193, 970, 1258
BspMI	ACCTGC	1 cut(s)	373
BspOI	GCTAGC	1 cut(s)	269
BspPI	GGATC	1 cut(s)	10
BspTI	CTTAAG	1 cut(s)	1075
BspTNI	GGTCTC	1 cut(s)	1036
BsrDI	GCAATG	2 cut(s)	985, 1084
BssECI	CCNNGG	3 cut(s)	710, 1095, 1197
BssMI	GATC	2 cut(s)	15, 695
BssT1I	CCWWGG	2 cut(s)	1095, 1197
Bst4CI	ACNGT	6 cut(s)	304, 357, 483, 680, 724, 1314
Bst6I	CTCTTC	3 cut(s)	239, 360, 1217
BstAFI	CTTAAG	1 cut(s)	1075
BstAPI	GCANNNNNTGC	1 cut(s)	197
BstC8I	GCNNGC	1 cut(s)	267
BstDEI	CTNAG	2 cut(s)	140, 658
BstDSI	CCRYGG	2 cut(s)	710, 1197
BstF5I	GGATG	4 cut(s)	331, 1186, 1207, 1279
BstFNI	CGCG	1 cut(s)	712
BstHHI	GCGC	1 cut(s)	1186
BstKTI	GATC	2 cut(s)	18, 698
BstMAI	GTCTC	2 cut(s)	483, 1036
BstMBI	GATC	2 cut(s)	15, 695
BstMWI	GCNNNNNNNGC	3 cut(s)	176, 185, 197
BstNSI	RCATGY	1 cut(s)	590
BstSCI	CCNGG	2 cut(s)	291, 1034
BstSFI	CTRYAG	3 cut(s)	189, 966, 1254
BstUI	CGCG	1 cut(s)	712
BstV1I	GCAGC	6 cut(s)	175, 203, 934, 952, 1268, 1271
BstV2I	GAAGAC	1 cut(s)	379
BstX2I	RGATCY	1 cut(s)	15
BstXI	CCANNNNNNTGG	1 cut(s)	1270
BstYI	RGATCY	1 cut(s)	15
BsuRI	GGCC	1 cut(s)	170
BtgI	CCRYGG	2 cut(s)	710, 1197
BtsCI	GGATG	4 cut(s)	331, 1186, 1207, 1279
BtsI	GCAGTG	1 cut(s)	1239
BtsIMutI	CAGTG	3 cut(s)	362, 720, 1239
BveI	ACCTGC	1 cut(s)	373
Cac8I	GCNNGC	1 cut(s)	267
CaiI	CAGNNNCTG	1 cut(s)	361
CfoI	GCGC	1 cut(s)	1186
Cfr13I	GGNCC	1 cut(s)	1066
Cfr42I	CCGCGG	1 cut(s)	713
CseI	GACGC	1 cut(s)	574
Csp6I	GTAC	2 cut(s)	46, 1005
CviAII	CATG	3 cut(s)	236, 587, 1198
CviQI	GTAC	2 cut(s)	46, 1005
DdeI	CTNAG	2 cut(s)	140, 658
DpnI	GATC	2 cut(s)	17, 697
DpnII	GATC	2 cut(s)	15, 695
Eam1104I	CTCTTC	3 cut(s)	239, 360, 1217
EarI	CTCTTC	3 cut(s)	239, 360, 1217
Eco130I	CCWWGG	2 cut(s)	1095, 1197
Eco31I	GGTCTC	1 cut(s)	1036
Eco47I	GGWCC	1 cut(s)	1066
Eco57I	CTGAAG	1 cut(s)	1040
Eco88I	CYCGRG	1 cut(s)	569
EcoO109I	RGGNCCY	1 cut(s)	1066
EcoT14I	CCWWGG	2 cut(s)	1095, 1197
ErhI	CCWWGG	2 cut(s)	1095, 1197
FaeI	CATG	3 cut(s)	239, 590, 1201
FalI	AAGNNNNNCTT	2 cut(s)	827, 859
FatI	CATG	3 cut(s)	235, 586, 1197
FauI	CCCGC	1 cut(s)	705
FauNDI	CATATG	3 cut(s)	75, 462, 1161
Fnu4HI	GCNGC	8 cut(s)	189, 192, 710, 948, 951, 966, 1257, 1260
FokI	GGATG	4 cut(s)	338, 1193, 1214, 1286
Fsp4HI	GCNGC	8 cut(s)	189, 192, 710, 948, 951, 966, 1257, 1260
FspBI	CTAG	5 cut(s)	266, 497, 648, 855, 1239
GlaI	GCGC	1 cut(s)	1185
GluI	GCNGC	8 cut(s)	189, 192, 710, 948, 951, 966, 1257, 1260
GsuI	CTGGAG	3 cut(s)	275, 795, 840
HaeIII	GGCC	1 cut(s)	170
HapII	CCGG	2 cut(s)	292, 1035
HgaI	GACGC	1 cut(s)	574
HhaI	GCGC	1 cut(s)	1186
Hin1II	CATG	3 cut(s)	239, 590, 1201
Hin6I	GCGC	1 cut(s)	1184
HinP1I	GCGC	1 cut(s)	1184
HindIII	AAGCTT	2 cut(s)	137, 841
HinfI	GANTC	2 cut(s)	93, 986
HpaII	CCGG	2 cut(s)	292, 1035
HphI	GGTGA	2 cut(s)	890, 1147
Hpy188I	TCNGA	5 cut(s)	15, 508, 669, 760, 1059
Hpy188III	TCNNGA	9 cut(s)	31, 155, 206, 254, 398, 819, 855, 1213, 1344
HpyAV	CCTTC	5 cut(s)	316, 514, 569, 895, 1054
HpyCH4III	ACNGT	6 cut(s)	304, 357, 483, 680, 724, 1314
HpyCH4V	TGCA	9 cut(s)	10, 79, 191, 382, 460, 466, 478, 968, 1256
HpyF10VI	GCNNNNNNNGC	3 cut(s)	176, 185, 197
HpyF3I	CTNAG	2 cut(s)	140, 658
Hsp92II	CATG	3 cut(s)	239, 590, 1201
HspAI	GCGC	1 cut(s)	1184
KspI	CCGCGG	1 cut(s)	713
Kzo9I	GATC	2 cut(s)	15, 695
Lsp1109I	GCAGC	6 cut(s)	175, 203, 934, 952, 1268, 1271
LweI	GCATC	4 cut(s)	19, 465, 860, 1171
MaeI	CTAG	5 cut(s)	266, 497, 648, 855, 1239
MaeIII	GTNAC	3 cut(s)	206, 650, 1318
MalI	GATC	2 cut(s)	17, 697
MboI	GATC	2 cut(s)	15, 695
MboII	GAAGA	7 cut(s)	239, 256, 377, 384, 847, 1136, 1234
MflI	RGATCY	1 cut(s)	15
MluCI	AATT	7 cut(s)	39, 230, 273, 447, 613, 1139, 1324
MseI	TTAA	7 cut(s)	42, 276, 560, 581, 960, 1076, 1142
MslI	CAYNNNNRTG	1 cut(s)	896
MspA1I	CMGCKG	2 cut(s)	712, 773
MspCI	CTTAAG	1 cut(s)	1075
MspI	CCGG	2 cut(s)	292, 1035
MspR9I	CCNGG	2 cut(s)	293, 1036
Mva1269I	GAATGC	1 cut(s)	1117
MvnI	CGCG	1 cut(s)	712
MwoI	GCNNNNNNNGC	3 cut(s)	176, 185, 197
NciI	CCSGG	2 cut(s)	293, 1036
NcoI	CCATGG	1 cut(s)	1197
NdeI	CATATG	3 cut(s)	75, 462, 1161
NdeII	GATC	2 cut(s)	15, 695
NheI	GCTAGC	1 cut(s)	265
NlaIII	CATG	3 cut(s)	239, 590, 1201
NlaIV	GGNNCC	2 cut(s)	628, 718
NmuCI	GTSAC	2 cut(s)	206, 1318
NspI	RCATGY	1 cut(s)	590
PaeR7I	CTCGAG	1 cut(s)	569
PctI	GAATGC	1 cut(s)	1117
PfeI	GAWTC	2 cut(s)	93, 986
PkrI	GCNGC	8 cut(s)	190, 193, 711, 949, 952, 967, 1258, 1261
PpuMI	RGGWCCY	1 cut(s)	1066
Psp5II	RGGWCCY	1 cut(s)	1066
PspN4I	GGNNCC	2 cut(s)	628, 718
PspPI	GGNCC	1 cut(s)	1066
PspPPI	RGGWCCY	1 cut(s)	1066
PspXI	VCTCGAGB	1 cut(s)	569
PsrI	GAACNNNNNNTAC	2 cut(s)	378, 410
PstI	CTGCAG	3 cut(s)	193, 970, 1258
PstNI	CAGNNNCTG	1 cut(s)	361
PsuI	RGATCY	1 cut(s)	15
PvuII	CAGCTG	1 cut(s)	773
RsaI	GTAC	2 cut(s)	47, 1006
RsaNI	GTAC	2 cut(s)	46, 1005
RseI	CAYNNNNRTG	1 cut(s)	896
SacII	CCGCGG	1 cut(s)	713
SaqAI	TTAA	7 cut(s)	42, 276, 560, 581, 960, 1076, 1142
SatI	GCNGC	8 cut(s)	189, 192, 710, 948, 951, 966, 1257, 1260
Sau3AI	GATC	2 cut(s)	15, 695
Sau96I	GGNCC	1 cut(s)	1066
ScrFI	CCNGG	2 cut(s)	293, 1036
SfaNI	GCATC	4 cut(s)	19, 465, 860, 1171
SfcI	CTRYAG	3 cut(s)	189, 966, 1254
Sfr274I	CTCGAG	1 cut(s)	569
Sfr303I	CCGCGG	1 cut(s)	713
SgrBI	CCGCGG	1 cut(s)	713
SinI	GGWCC	1 cut(s)	1066
SlaI	CTCGAG	1 cut(s)	569
SmiMI	CAYNNNNRTG	1 cut(s)	896
SmlI	CTYRAG	4 cut(s)	161, 536, 569, 1075
SmoI	CTYRAG	4 cut(s)	161, 536, 569, 1075
Sse9I	AATT	7 cut(s)	39, 230, 273, 447, 613, 1139, 1324
SsiI	CCGC	5 cut(s)	112, 710, 712, 876, 951
SspI	AATATT	1 cut(s)	437
SspMI	CTAG	5 cut(s)	266, 497, 648, 855, 1239
StyD4I	CCNGG	2 cut(s)	291, 1034
StyI	CCWWGG	2 cut(s)	1095, 1197
TaaI	ACNGT	6 cut(s)	304, 357, 483, 680, 724, 1314
TaqI	TCGA	5 cut(s)	32, 99, 570, 593, 698
TasI	AATT	7 cut(s)	39, 230, 273, 447, 613, 1139, 1324
TauI	GCSGC	2 cut(s)	712, 953
TfiI	GAWTC	2 cut(s)	93, 986
Tru1I	TTAA	7 cut(s)	42, 276, 560, 581, 960, 1076, 1142
Tru9I	TTAA	7 cut(s)	42, 276, 560, 581, 960, 1076, 1142
TscAI	CASTG	3 cut(s)	362, 727, 1239
TseFI	GTSAC	2 cut(s)	206, 1318
TseI	GCWGC	6 cut(s)	188, 191, 947, 965, 1256, 1259
Tsp45I	GTSAC	2 cut(s)	206, 1318
TspDTI	ATGAA	8 cut(s)	14, 563, 914, 1124, 1137, 1184, 1235, 1290
TspRI	CASTG	3 cut(s)	362, 727, 1239
Vha464I	CTTAAG	1 cut(s)	1075
VpaK11BI	GGWCC	1 cut(s)	1066
XapI	RAATTY	1 cut(s)	1324
XbaI	TCTAGA	1 cut(s)	854
XceI	RCATGY	1 cut(s)	590
XhoI	CTCGAG	1 cut(s)	569
XspI	CTAG	5 cut(s)	266, 497, 648, 855, 1239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.