Rroxscaffold_1G00075550

Microtubule-associated protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
96254411 .. 96257812
3402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00075550.1

Sequence Viewer

Length: 1758 bp
ATGGTGGCGGGTCATGAACAACACCTACAACATGCAGCAGGAGGAGGAGGAGGAGGAGAGGACCTCTCTCTTGTCTCCGCAGACCCTGTTGTCTTAGAGCTCAATCGTATGCAGAACCTACTCAAAGAAAAGAGCCGCGAGTTGGGGATTGCTCAGGGTGAGATCAAGGCTCTCAGAGCTACTGAAGCTCTGAAGGATAAAGCTGTAGAAGAGCTAAGTAATGAAGTAGAGAAGCTGGATGAGAAACATAGGCTCACGCAAAATCTTCTAGAGCATAAGAGCCTTGAAATTAAGAAACTAACAGATGAGAAGAGAGATGCATTAGCTGCACAATATGCTGCAGAAGCAACTCTTAGAAGGGTACACACAAATCAAAAGGATGACGAACTTCCTTCTCTTGAATCTGTCATTGCTCCTCTCGAGGCTGAAATCAAAATGTGCAAGAATGAGATTGCAGCGCTTCAGGAGGACAATAAGGCTTTGGAACGACTCACCAAGTCGAAAGAGTCGGCTCTTCTTGAGGCAGAAAGGATATTGCGAAGTGCACTAGAAAGAGCTCTAATAGTTGAAGAGGTCCAAAACCAGAACTTCGAATTGAGGAGACAAATTGAAATCTGCCAGGAGGAAAACAGAATCCTTGAGAAAACAAATCGTCAAAAGGTTTTAGAGGTTGAAAAGCTTAGCCAAACCATTCAGGAACTTGAGGAGGCCATTTTAGCTGGAGGGGCTGCTGCCAATGCTATTCGTGACTACAAAAGACAGATAGATGAATTACATGACGAGAAGAGGACTCTGGAGAGGGAGTTAGCAAGAGTGAAAGTTTCTGCAAACCGAGTAGCTACTGTTATTGCTAACGAGTGGAAGGATGAAAATGACAAAGTTATGCCTGTTAAACAGTGGCTGGAAGAGAGAAGACTTATGCAGGCAGAGATGCAACGTATGAGGGAGAAGCTAGCAATCTCGGATAGAACAGCCAAGGCAGAGGCACAACTCAAGGAAAAGCTGAAGTTGAGGCTGAAGACTCTAGAAGAAGGGTTAAAGCATGTTTCAAGTTTCTCTGTCAATCCTAATTCATTTTGCCGTTCCCCTAAAACAGAGAAGTCCAGCAACTTCTTAGGATTTCTGACAAGCCCTGGTGGATTAGGAAAGAGATCAACTTCACAACCAAGAGCCTGCACTCTTAGAAGTTCTCCTCTCCAACAGCCAAATTCAGACAATGAAACAGCCAATGCTGCCGGAGAGCTAAAAAGATCAAATAGCTTTAAAAAGAGATACGGTTCAGGAGAAAAAATGCTGAGAAAAAGCTTATGGGCTTCTAGAACTAAAGTTGTTGATAGTGGTGAGAAGGAGAACACAGAACAGAAGGCAAATACTGATAACAACAAGAATGATGATCAGACAGTTACTGCTGATATAAAAACTAAAGATGGTGCCAAAGAAGACTCACCCAACAAGATAAGCATTAACTGTGAAAGTGAAGATGTGGTCTCAGGATTTCTCTATGACAGACTTCAAAAGGAGGTCATCAATCTGAGGAGGCATTGTGAAGTCAAAGAGAGTGATATGAATGCGAAAGAACAAGAAATAAAGATGCTGATGAAAAAGGTTGATGCACTGACAAAAGCCATGGAAGTGGAGTCTAAGAAAATGAAGAGAGAAGCCGTAGCTAGAGATAAAGAAGCTGCAGCAGCCAAGGTCGATGATAACAAAAAGAACAGAACTATAAACTCATCTAAGAGGGTAACAAAAGCATCTTGA

Protein Analysis

585

Amino Acids

66.05

Weight (kDa)

8.56

Isoelectric Point (pI)

49.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAP70 PF07058 24 - 583 6.2e-224 Microtubule-associated protein 70
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17220
fragaria_vesca FvH4_3g00480 FvH4_3g00480
malus_domestica MD00G1056800.v1.1
prunus_persica Prupe.4G005400_v2.0.a1
pyrus_communis pycom05g32710
rosa_chinensis RchiOBHm_Chr5g0000651
rosa_laevigata RLG00000030885
rosa_multiflora Rmu_sc0011992.1_g000012
rosa_roxburghii Rroxscaffold_1G00075550
rosa_rugosa Rorug04G0385500
rosa_samantha Rh5AG005300 Rh5BG006900 Rh5CG005900 Rh5DG005800
rosa_wichuraiana Rw5G000550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 89
AccB1I GGYRCC 1 cut(s) 1430
AccII CGCG 1 cut(s) 138
AciI CCGC 3 cut(s) 8, 78, 136
AcsI RAATTY 1 cut(s) 1207
AcuI CTGAAG 5 cut(s) 204, 212, 446, 1025, 1037
AfaI GTAC 1 cut(s) 363
AfeI AGCGCT 1 cut(s) 459
AfiI CCNNNNNNNGG 1 cut(s) 142
AgsI TTSAA 7 cut(s) 287, 401, 569, 611, 674, 1050, 1514
AjnI CCWGG 2 cut(s) 618, 1132
Alw21I GWGCWC 3 cut(s) 102, 547, 559
Alw26I GTCTC 3 cut(s) 79, 595, 1492
Alw44I GTGCAC 1 cut(s) 543
AlwNI CAGNNNCTG 3 cut(s) 86, 901, 1406
Ama87I CYCGRG 1 cut(s) 419
Aor51HI AGCGCT 1 cut(s) 459
AoxI GGCC 1 cut(s) 708
ApaLI GTGCAC 1 cut(s) 543
ApoI RAATTY 1 cut(s) 1207
AspLEI GCGC 1 cut(s) 460
AspS9I GGNCC 2 cut(s) 61, 574
AsuHPI GGTGA 4 cut(s) 170, 484, 1352, 1437
AsuII TTCGAA 1 cut(s) 591
AsuNHI GCTAGC 1 cut(s) 952
AvaI CYCGRG 1 cut(s) 419
AvaII GGWCC 2 cut(s) 61, 574
BaeGI GKGCMC 1 cut(s) 547
BanI GGYRCC 1 cut(s) 1430
BanII GRGCYC 2 cut(s) 102, 559
BbsI GAAGAC 3 cut(s) 919, 1025, 1446
Bbv12I GWGCWC 3 cut(s) 102, 547, 559
BccI CCATC 1 cut(s) 1421
BceAI ACGGC 2 cut(s) 1065, 1646
BciT130I CCWGG 2 cut(s) 620, 1134
BclI TGATCA 1 cut(s) 1393
BcoDI GTCTC 3 cut(s) 79, 595, 1492
BfaI CTAG 6 cut(s) 269, 548, 953, 1025, 1317, 1668
BfmI CTRYAG 3 cut(s) 204, 339, 1683
BfoI RGCGCY 1 cut(s) 461
BlpI GCTNAGC 1 cut(s) 680
Bme1390I CCNGG 2 cut(s) 620, 1134
Bme18I GGWCC 2 cut(s) 61, 574
BmeT110I CYCGRG 1 cut(s) 419
BmgT120I GGNCC 2 cut(s) 61, 574
BmiI GGNNCC 1 cut(s) 1432
BmrFI CCNGG 2 cut(s) 620, 1134
BmsI GCATC 4 cut(s) 307, 921, 1581, 1600
BmtI GCTAGC 1 cut(s) 956
BpiI GAAGAC 3 cut(s) 919, 1025, 1446
BplI GAGNNNNNCTC 4 cut(s) 48, 80, 50, 82
BpmI CTGGAG 2 cut(s) 741, 815
Bpu10I CCTNAGC 1 cut(s) 153
Bpu1102I GCTNAGC 1 cut(s) 680
Bpu14I TTCGAA 1 cut(s) 591
BpuEI CTTGAG 4 cut(s) 539, 659, 722, 977
BsaI GGTCTC 1 cut(s) 1492
BsaJI CCNNGG 4 cut(s) 975, 1132, 1626, 1692
BsaXI ACNNNNNCTCC 4 cut(s) 788, 818, 1528, 1558
Bsc4I CCNNNNNNNGG 1 cut(s) 142
Bse3DI GCAATG 1 cut(s) 408
BseBI CCWGG 2 cut(s) 620, 1134
BseDI CCNNGG 4 cut(s) 975, 1132, 1626, 1692
BseGI GGATG 3 cut(s) 244, 385, 871
BseLI CCNNNNNNNGG 1 cut(s) 142
BseMI GCAATG 1 cut(s) 408
BseMII CTCAG 5 cut(s) 167, 187, 1286, 1503, 1523
BseSI GKGCMC 1 cut(s) 547
BsgI GTGCAG 2 cut(s) 312, 1159
Bsh1236I CGCG 1 cut(s) 138
BshFI GGCC 1 cut(s) 710
BshNI GGYRCC 1 cut(s) 1430
BsiHKAI GWGCWC 3 cut(s) 102, 547, 559
BsiHKCI CYCGRG 1 cut(s) 419
BsiSI CCGG 1 cut(s) 1236
BslI CCNNNNNNNGG 1 cut(s) 142
BsmAI GTCTC 3 cut(s) 79, 595, 1492
BsmI GAATGC 1 cut(s) 1573
BsnI GGCC 1 cut(s) 710
Bso31I GGTCTC 1 cut(s) 1492
BsoBI CYCGRG 1 cut(s) 419
Bsp119I TTCGAA 1 cut(s) 591
Bsp1286I GDGCHC 3 cut(s) 102, 547, 559
Bsp143I GATC 4 cut(s) 162, 1151, 1250, 1393
Bsp1720I GCTNAGC 1 cut(s) 680
Bsp19I CCATGG 1 cut(s) 1626
BspACI CCGC 3 cut(s) 8, 78, 136
BspANI GGCC 1 cut(s) 710
BspCNI CTCAG 5 cut(s) 166, 186, 1287, 1502, 1524
BspFNI CGCG 1 cut(s) 138
BspHI TCATGA 1 cut(s) 13
BspLI GGNNCC 1 cut(s) 1432
BspMAI CTGCAG 2 cut(s) 343, 1687
BspOI GCTAGC 1 cut(s) 956
BspQI GCTCTTC 2 cut(s) 204, 519
BspT104I TTCGAA 1 cut(s) 591
BspT107I GGYRCC 1 cut(s) 1430
BspTNI GGTCTC 1 cut(s) 1492
BsrDI GCAATG 1 cut(s) 408
BssECI CCNNGG 4 cut(s) 975, 1132, 1626, 1692
BssMI GATC 4 cut(s) 162, 1151, 1250, 1393
BssT1I CCWWGG 3 cut(s) 975, 1626, 1692
Bst2UI CCWGG 2 cut(s) 620, 1134
Bst4CI ACNGT 5 cut(s) 844, 897, 1277, 1402, 1469
Bst6I CTCTTC 7 cut(s) 204, 305, 519, 564, 779, 900, 1646
BstAPI GCANNNNNTGC 2 cut(s) 326, 335
BstBI TTCGAA 1 cut(s) 591
BstC8I GCNNGC 3 cut(s) 924, 954, 1174
BstDSI CCRYGG 1 cut(s) 1626
BstF5I GGATG 3 cut(s) 244, 385, 871
BstFNI CGCG 1 cut(s) 138
BstH2I RGCGCY 1 cut(s) 461
BstHHI GCGC 1 cut(s) 460
BstKTI GATC 4 cut(s) 165, 1154, 1253, 1396
BstMAI GTCTC 3 cut(s) 79, 595, 1492
BstMBI GATC 4 cut(s) 162, 1151, 1250, 1393
BstNI CCWGG 2 cut(s) 620, 1134
BstNSI RCATGY 2 cut(s) 35, 1046
BstSCI CCNGG 2 cut(s) 618, 1132
BstSFI CTRYAG 3 cut(s) 204, 339, 1683
BstSLI GKGCMC 1 cut(s) 547
BstUI CGCG 1 cut(s) 138
BstV2I GAAGAC 3 cut(s) 919, 1025, 1446
BstXI CCANNNNNNTGG 1 cut(s) 1633
BsuRI GGCC 1 cut(s) 710
BtgI CCRYGG 1 cut(s) 1626
BtsCI GGATG 3 cut(s) 244, 385, 871
BtsIMutI CAGTG 2 cut(s) 902, 1613
Cac8I GCNNGC 3 cut(s) 924, 954, 1174
CaiI CAGNNNCTG 3 cut(s) 86, 901, 1406
CciI TCATGA 1 cut(s) 13
CfoI GCGC 1 cut(s) 460
Cfr13I GGNCC 2 cut(s) 61, 574
Csp6I GTAC 1 cut(s) 362
CviAII CATG 5 cut(s) 14, 32, 776, 1043, 1627
CviQI GTAC 1 cut(s) 362
DpnI GATC 4 cut(s) 164, 1153, 1252, 1395
DpnII GATC 4 cut(s) 162, 1151, 1250, 1393
DraI TTTAAA 1 cut(s) 1264
DrdI GACNNNNNNGTC 1 cut(s) 89
DseDI GACNNNNNNGTC 1 cut(s) 89
Eam1104I CTCTTC 7 cut(s) 204, 305, 519, 564, 779, 900, 1646
EarI CTCTTC 7 cut(s) 204, 305, 519, 564, 779, 900, 1646
Ecl136II GAGCTC 2 cut(s) 100, 557
Eco130I CCWWGG 3 cut(s) 975, 1626, 1692
Eco24I GRGCYC 2 cut(s) 102, 559
Eco31I GGTCTC 1 cut(s) 1492
Eco47I GGWCC 2 cut(s) 61, 574
Eco47III AGCGCT 1 cut(s) 459
Eco53kI GAGCTC 2 cut(s) 100, 557
Eco57I CTGAAG 5 cut(s) 204, 212, 446, 1025, 1037
Eco88I CYCGRG 1 cut(s) 419
EcoICRI GAGCTC 2 cut(s) 100, 557
EcoO109I RGGNCCY 1 cut(s) 61
EcoRII CCWGG 2 cut(s) 618, 1132
EcoT14I CCWWGG 3 cut(s) 975, 1626, 1692
EcoT22I ATGCAT 1 cut(s) 322
EcoT38I GRGCYC 2 cut(s) 102, 559
ErhI CCWWGG 3 cut(s) 975, 1626, 1692
FaeI CATG 5 cut(s) 17, 35, 779, 1046, 1630
FalI AAGNNNNNCTT 2 cut(s) 336, 368
FatI CATG 5 cut(s) 13, 31, 775, 1042, 1626
FbaI TGATCA 1 cut(s) 1393
FokI GGATG 3 cut(s) 251, 392, 878
FriOI GRGCYC 2 cut(s) 102, 559
FspBI CTAG 6 cut(s) 269, 548, 953, 1025, 1317, 1668
GlaI GCGC 1 cut(s) 459
GsuI CTGGAG 2 cut(s) 741, 815
HaeII RGCGCY 1 cut(s) 461
HaeIII GGCC 1 cut(s) 710
HapII CCGG 1 cut(s) 1236
HhaI GCGC 1 cut(s) 460
Hin1II CATG 5 cut(s) 17, 35, 779, 1046, 1630
Hin6I GCGC 1 cut(s) 458
HinP1I GCGC 1 cut(s) 458
HindIII AAGCTT 2 cut(s) 677, 1303
HinfI GANTC 8 cut(s) 401, 489, 506, 633, 790, 1021, 1442, 1637
HpaII CCGG 1 cut(s) 1236
HphI GGTGA 4 cut(s) 170, 484, 1352, 1437
Hpy166II GTNNAC 2 cut(s) 364, 545
Hpy188I TCNGA 7 cut(s) 176, 192, 964, 1125, 1213, 1398, 1533
Hpy8I GTNNAC 2 cut(s) 364, 545
HpyAV CCTTC 7 cut(s) 187, 351, 402, 856, 1025, 1339, 1357
HpyCH4III ACNGT 5 cut(s) 844, 897, 1277, 1402, 1469
HpyCH4IV ACGT 1 cut(s) 937
HpySE526I ACGT 1 cut(s) 937
Hsp92II CATG 5 cut(s) 17, 35, 779, 1046, 1630
HspAI GCGC 1 cut(s) 458
Ksp22I TGATCA 1 cut(s) 1393
Kzo9I GATC 4 cut(s) 162, 1151, 1250, 1393
LguI GCTCTTC 2 cut(s) 204, 519
LmnI GCTCC 1 cut(s) 418
LweI GCATC 4 cut(s) 307, 921, 1581, 1600
MaeI CTAG 6 cut(s) 269, 548, 953, 1025, 1317, 1668
MaeII ACGT 1 cut(s) 937
MaeIII GTNAC 3 cut(s) 746, 1402, 1741
MalI GATC 4 cut(s) 164, 1153, 1252, 1395
MboI GATC 4 cut(s) 162, 1151, 1250, 1393
MhlI GDGCHC 3 cut(s) 102, 547, 559
MluCI AATT 6 cut(s) 288, 593, 606, 770, 1069, 1207
MlyI GAGTC 6 cut(s) 483, 515, 784, 1015, 1436, 1646
MmeI TCCRAC 1 cut(s) 1222
Mph1103I ATGCAT 1 cut(s) 322
MseI TTAA 5 cut(s) 291, 891, 1037, 1263, 1464
MslI CAYNNNNRTG 1 cut(s) 1631
MspI CCGG 1 cut(s) 1236
MspR9I CCNGG 2 cut(s) 620, 1134
Mva1269I GAATGC 1 cut(s) 1573
MvaI CCWGG 2 cut(s) 620, 1134
MvnI CGCG 1 cut(s) 138
NcoI CCATGG 1 cut(s) 1626
NdeII GATC 4 cut(s) 162, 1151, 1250, 1393
NheI GCTAGC 1 cut(s) 952
NlaIII CATG 5 cut(s) 17, 35, 779, 1046, 1630
NlaIV GGNNCC 1 cut(s) 1432
NmuCI GTSAC 1 cut(s) 746
NsiI ATGCAT 1 cut(s) 322
NspI RCATGY 2 cut(s) 35, 1046
NspV TTCGAA 1 cut(s) 591
PaeR7I CTCGAG 1 cut(s) 419
PagI TCATGA 1 cut(s) 13
PciSI GCTCTTC 2 cut(s) 204, 519
PctI GAATGC 1 cut(s) 1573
PfeI GAWTC 2 cut(s) 401, 633
PleI GAGTC 6 cut(s) 483, 514, 784, 1015, 1436, 1645
PpsI GAGTC 6 cut(s) 483, 514, 784, 1015, 1436, 1645
PpuMI RGGWCCY 1 cut(s) 61
Psp124BI GAGCTC 2 cut(s) 102, 559
Psp5II RGGWCCY 1 cut(s) 61
Psp6I CCWGG 2 cut(s) 618, 1132
PspGI CCWGG 2 cut(s) 618, 1132
PspN4I GGNNCC 1 cut(s) 1432
PspPI GGNCC 2 cut(s) 61, 574
PspPPI RGGWCCY 1 cut(s) 61
PsrI GAACNNNNNNTAC 2 cut(s) 9, 41
PstI CTGCAG 2 cut(s) 343, 1687
PstNI CAGNNNCTG 3 cut(s) 86, 901, 1406
RsaI GTAC 1 cut(s) 363
RsaNI GTAC 1 cut(s) 362
RseI CAYNNNNRTG 1 cut(s) 1631
SacI GAGCTC 2 cut(s) 102, 559
SapI GCTCTTC 2 cut(s) 204, 519
SaqAI TTAA 5 cut(s) 291, 891, 1037, 1263, 1464
Sau3AI GATC 4 cut(s) 162, 1151, 1250, 1393
Sau96I GGNCC 2 cut(s) 61, 574
SchI GAGTC 6 cut(s) 483, 515, 784, 1015, 1436, 1646
ScrFI CCNGG 2 cut(s) 620, 1134
SduI GDGCHC 3 cut(s) 102, 547, 559
SfaNI GCATC 4 cut(s) 307, 921, 1581, 1600
SfcI CTRYAG 3 cut(s) 204, 339, 1683
Sfr274I CTCGAG 1 cut(s) 419
SfuI TTCGAA 1 cut(s) 591
SinI GGWCC 2 cut(s) 61, 574
SlaI CTCGAG 1 cut(s) 419
SmiMI CAYNNNNRTG 1 cut(s) 1631
SmlI CTYRAG 5 cut(s) 419, 518, 638, 701, 992
SmoI CTYRAG 5 cut(s) 419, 518, 638, 701, 992
Sse9I AATT 6 cut(s) 288, 593, 606, 770, 1069, 1207
SsiI CCGC 3 cut(s) 8, 78, 136
SspMI CTAG 6 cut(s) 269, 548, 953, 1025, 1317, 1668
SstI GAGCTC 2 cut(s) 102, 559
StyD4I CCNGG 2 cut(s) 618, 1132
StyI CCWWGG 3 cut(s) 975, 1626, 1692
TaaI ACNGT 5 cut(s) 844, 897, 1277, 1402, 1469
TaiI ACGT 1 cut(s) 940
TaqI TCGA 4 cut(s) 420, 500, 591, 1698
TasI AATT 6 cut(s) 288, 593, 606, 770, 1069, 1207
TauI GCSGC 1 cut(s) 138
TfiI GAWTC 2 cut(s) 401, 633
Tru1I TTAA 5 cut(s) 291, 891, 1037, 1263, 1464
Tru9I TTAA 5 cut(s) 291, 891, 1037, 1263, 1464
TscAI CASTG 2 cut(s) 902, 1620
TseFI GTSAC 1 cut(s) 746
Tsp45I GTSAC 1 cut(s) 746
TspDTI ATGAA 9 cut(s) 30, 237, 783, 882, 1062, 1233, 1580, 1613, 1664
TspRI CASTG 2 cut(s) 902, 1620
VneI GTGCAC 1 cut(s) 543
VpaK11BI GGWCC 2 cut(s) 61, 574
XapI RAATTY 1 cut(s) 1207
XbaI TCTAGA 3 cut(s) 268, 1024, 1316
XceI RCATGY 2 cut(s) 35, 1046
XhoI CTCGAG 1 cut(s) 419
XspI CTAG 6 cut(s) 269, 548, 953, 1025, 1317, 1668
Zsp2I ATGCAT 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.