Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0015178

Physical Location & Seq

Genomic Coordinates Reverse (-)

496548 .. 504333

Gene Structure 7786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG006900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGTGGCGGGTCATGAACAACACCTACAACATGCAGCAGGAGGAGGAGGAGGAGGAGAGGACCTCTCTCTTGTCTCCGCAGACCCTGTTGTCTTAGAGCTCAATCGTATGCAGAACCTACTCAAAGAAAAGAGCCTCGAGTTGGGGATTGCTCAGGGTGAGATCAAGGCTCTCAGAGCTACTGAAGTTCTAAAGGATAAAGCTGTAGAAGAGCTAAGTAATGAAGTAGAGAAGCTGGATGAGAAACATAGGCTCACGCAAAATCTTCTAGAGCATAAGAACCTTGAAATTAAGAAACTAACAGATGAGAAGAGAGATGCATTAGCTGCACAATATGCTGCAGAAGCAACTCTTAGAAGGGTACACACAAATCAAAAGGATGACGAACTTCCTTCTCTTGAATCTGTCATTGCTCCTCTCGAGGCTGAAATCAAAATGTGCAAGAATGAGATTGCAGCGCTTCAGGAGGACAATAAGGCTTTGGAACGTCTCACCAAGTCGAAAGAGTCGGCTCTTCTTGAGGCAGAAAGGATATTGCGAAGTGCACTAGAAAGAGCTCTAATAGTTGAAGAGGTCCAAAACCAGAACTTCGAATTGAGGAGACAAATTGAAATCTGCCAGGAGGAAAACAGAATCCTTGAGAAAACAAATCGTCAAAAGGTTTTAGAGGTTGAAAAGCTTAGCCAAACCATTCAGGAACTTGAGGAGGCCATTTTAGCTGGAGGGGCTGCTGCCAATGCTATTCGTGACTACAAAAGACAGATAGATGAATTACATGACGAGAAGAGGACTCTGGAGAGGGAGCTAGCAAGAGTGAAAGTTTCCGCAAACCGAGTAGCTACTGTTATTGCTAACGAGTGGAAGGATGAAAACGACAAAGTTATGCCTGTTAAACAGTGGCTGGAAGAGAGAAGACTTATGCAGGCAGAGATGCAACGTATGAGGGAGAAGCTAGCAATCTCGGATAGAACAGCCAAGGCAGAGGCACAACTCAAGGTGAAATTTCCATACAAATACAAAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005874 GO:0006996 GO:0007010 GO:0007275 GO:0007389 GO:0008017 GO:0008092 GO:0008150 GO:0009832 GO:0009987 GO:0010051 GO:0015630 GO:0015631 GO:0016043 GO:0032501 GO:0032502 GO:0042546 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048856 GO:0071554 GO:0071669 GO:0071840 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MAP70

Protein Analysis

341

Amino Acids

38.96

Weight (kDa)

5.66

Isoelectric Point (pI)

42.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MAP70	PF07058	24 - 340	2.4e-166	Microtubule-associated protein 70

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015178)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17220
fragaria_vesca	FvH4_3g00480 FvH4_3g00480
malus_domestica	MD00G1056800.v1.1
prunus_persica	Prupe.4G005400_v2.0.a1
pyrus_communis	pycom05g32710
rosa_chinensis	RchiOBHm_Chr5g0000651
rosa_laevigata	RLG00000030885
rosa_multiflora	Rmu_sc0011992.1_g000012
rosa_roxburghii	Rroxscaffold_1G00075550
rosa_rugosa	Rorug04G0385500
rosa_samantha	Rh5AG005300 Rh5BG006900 Rh5CG005900 Rh5DG005800
rosa_wichuraiana	Rw5G000550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	89
AciI	CCGC	3 cut(s)	8, 78, 825
AcsI	RAATTY	1 cut(s)	1001
AcuI	CTGAAG	2 cut(s)	204, 446
AfaI	GTAC	1 cut(s)	363
AfeI	AGCGCT	1 cut(s)	459
AfiI	CCNNNNNNNGG	1 cut(s)	142
AgsI	TTSAA	5 cut(s)	287, 401, 569, 611, 674
AjnI	CCWGG	1 cut(s)	618
Alw21I	GWGCWC	3 cut(s)	102, 547, 559
Alw26I	GTCTC	3 cut(s)	79, 494, 595
Alw44I	GTGCAC	1 cut(s)	543
AlwNI	CAGNNNCTG	2 cut(s)	86, 901
Ama87I	CYCGRG	2 cut(s)	137, 419
Aor51HI	AGCGCT	1 cut(s)	459
AoxI	GGCC	1 cut(s)	708
ApaLI	GTGCAC	1 cut(s)	543
ApeKI	GCWGC	6 cut(s)	35, 326, 338, 455, 728, 731
ApoI	RAATTY	1 cut(s)	1001
AspLEI	GCGC	1 cut(s)	460
AspS9I	GGNCC	2 cut(s)	61, 574
AsuHPI	GGTGA	3 cut(s)	170, 484, 1009
AsuII	TTCGAA	1 cut(s)	591
AsuNHI	GCTAGC	2 cut(s)	805, 952
AvaI	CYCGRG	2 cut(s)	137, 419
AvaII	GGWCC	2 cut(s)	61, 574
BaeGI	GKGCMC	1 cut(s)	547
BanII	GRGCYC	2 cut(s)	102, 559
BbsI	GAAGAC	1 cut(s)	919
Bbv12I	GWGCWC	3 cut(s)	102, 547, 559
BbvI	GCAGC	6 cut(s)	47, 313, 325, 467, 715, 718
BciT130I	CCWGG	1 cut(s)	620
BcoDI	GTCTC	3 cut(s)	79, 494, 595
BfaI	CTAG	4 cut(s)	269, 548, 806, 953
BfmI	CTRYAG	2 cut(s)	204, 339
BfoI	RGCGCY	1 cut(s)	461
BisI	GCNGC	6 cut(s)	36, 327, 339, 456, 729, 732
BlpI	GCTNAGC	1 cut(s)	680
BlsI	GCNGC	6 cut(s)	37, 328, 340, 457, 730, 733
Bme1390I	CCNGG	1 cut(s)	620
Bme18I	GGWCC	2 cut(s)	61, 574
BmeT110I	CYCGRG	2 cut(s)	137, 419
BmgT120I	GGNCC	2 cut(s)	61, 574
BmrFI	CCNGG	1 cut(s)	620
BmsI	GCATC	2 cut(s)	307, 921
BmtI	GCTAGC	2 cut(s)	809, 956
BpiI	GAAGAC	1 cut(s)	919
BplI	GAGNNNNNCTC	4 cut(s)	48, 80, 50, 82
BpmI	CTGGAG	2 cut(s)	741, 815
Bpu10I	CCTNAGC	1 cut(s)	153
Bpu1102I	GCTNAGC	1 cut(s)	680
Bpu14I	TTCGAA	1 cut(s)	591
BpuEI	CTTGAG	4 cut(s)	539, 659, 722, 977
BsaJI	CCNNGG	1 cut(s)	975
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
Bse3DI	GCAATG	1 cut(s)	408
BseBI	CCWGG	1 cut(s)	620
BseDI	CCNNGG	1 cut(s)	975
BseGI	GGATG	3 cut(s)	244, 385, 871
BseLI	CCNNNNNNNGG	1 cut(s)	142
BseMI	GCAATG	1 cut(s)	408
BseMII	CTCAG	2 cut(s)	167, 187
BseRI	GAGGAG	8 cut(s)	57, 60, 63, 66, 69, 405, 613, 719
BseSI	GKGCMC	1 cut(s)	547
BseXI	GCAGC	6 cut(s)	47, 313, 325, 467, 715, 718
BsgI	GTGCAG	1 cut(s)	312
BshFI	GGCC	1 cut(s)	710
BsiHKAI	GWGCWC	3 cut(s)	102, 547, 559
BsiHKCI	CYCGRG	2 cut(s)	137, 419
BslI	CCNNNNNNNGG	1 cut(s)	142
BsmAI	GTCTC	3 cut(s)	79, 494, 595
BsmBI	CGTCTC	1 cut(s)	494
BsnI	GGCC	1 cut(s)	710
BsoBI	CYCGRG	2 cut(s)	137, 419
Bsp119I	TTCGAA	1 cut(s)	591
Bsp1286I	GDGCHC	3 cut(s)	102, 547, 559
Bsp143I	GATC	1 cut(s)	162
Bsp1720I	GCTNAGC	1 cut(s)	680
BspACI	CCGC	3 cut(s)	8, 78, 825
BspANI	GGCC	1 cut(s)	710
BspCNI	CTCAG	2 cut(s)	166, 186
BspHI	TCATGA	1 cut(s)	13
BspMAI	CTGCAG	1 cut(s)	343
BspOI	GCTAGC	2 cut(s)	809, 956
BspQI	GCTCTTC	2 cut(s)	204, 519
BspT104I	TTCGAA	1 cut(s)	591
BsrDI	GCAATG	1 cut(s)	408
BssECI	CCNNGG	1 cut(s)	975
BssMI	GATC	1 cut(s)	162
BssT1I	CCWWGG	1 cut(s)	975
Bst2UI	CCWGG	1 cut(s)	620
Bst4CI	ACNGT	2 cut(s)	844, 897
Bst6I	CTCTTC	6 cut(s)	204, 305, 519, 564, 779, 900
BstAPI	GCANNNNNTGC	2 cut(s)	326, 335
BstBI	TTCGAA	1 cut(s)	591
BstC8I	GCNNGC	3 cut(s)	807, 924, 954
BstDEI	CTNAG	6 cut(s)	94, 153, 173, 215, 353, 680
BstF5I	GGATG	3 cut(s)	244, 385, 871
BstH2I	RGCGCY	1 cut(s)	461
BstHHI	GCGC	1 cut(s)	460
BstKTI	GATC	1 cut(s)	165
BstMAI	GTCTC	3 cut(s)	79, 494, 595
BstMBI	GATC	1 cut(s)	162
BstMWI	GCNNNNNNNGC	7 cut(s)	176, 326, 335, 344, 716, 725, 737
BstNI	CCWGG	1 cut(s)	620
BstNSI	RCATGY	1 cut(s)	35
BstSCI	CCNGG	1 cut(s)	618
BstSFI	CTRYAG	2 cut(s)	204, 339
BstSLI	GKGCMC	1 cut(s)	547
BstV1I	GCAGC	6 cut(s)	47, 313, 325, 467, 715, 718
BstV2I	GAAGAC	1 cut(s)	919
BsuRI	GGCC	1 cut(s)	710
BtsCI	GGATG	3 cut(s)	244, 385, 871
BtsIMutI	CAGTG	1 cut(s)	902
Cac8I	GCNNGC	3 cut(s)	807, 924, 954
CaiI	CAGNNNCTG	2 cut(s)	86, 901
CciI	TCATGA	1 cut(s)	13
CfoI	GCGC	1 cut(s)	460
Cfr13I	GGNCC	2 cut(s)	61, 574
Csp6I	GTAC	1 cut(s)	362
CviAII	CATG	3 cut(s)	14, 32, 776
CviQI	GTAC	1 cut(s)	362
DdeI	CTNAG	6 cut(s)	94, 153, 173, 215, 353, 680
DpnI	GATC	1 cut(s)	164
DpnII	GATC	1 cut(s)	162
DrdI	GACNNNNNNGTC	1 cut(s)	89
DseDI	GACNNNNNNGTC	1 cut(s)	89
Eam1104I	CTCTTC	6 cut(s)	204, 305, 519, 564, 779, 900
EarI	CTCTTC	6 cut(s)	204, 305, 519, 564, 779, 900
Ecl136II	GAGCTC	2 cut(s)	100, 557
Eco130I	CCWWGG	1 cut(s)	975
Eco24I	GRGCYC	2 cut(s)	102, 559
Eco47I	GGWCC	2 cut(s)	61, 574
Eco47III	AGCGCT	1 cut(s)	459
Eco53kI	GAGCTC	2 cut(s)	100, 557
Eco57I	CTGAAG	2 cut(s)	204, 446
Eco88I	CYCGRG	2 cut(s)	137, 419
EcoICRI	GAGCTC	2 cut(s)	100, 557
EcoO109I	RGGNCCY	1 cut(s)	61
EcoRII	CCWGG	1 cut(s)	618
EcoT14I	CCWWGG	1 cut(s)	975
EcoT22I	ATGCAT	1 cut(s)	322
EcoT38I	GRGCYC	2 cut(s)	102, 559
ErhI	CCWWGG	1 cut(s)	975
Esp3I	CGTCTC	1 cut(s)	494
FaeI	CATG	3 cut(s)	17, 35, 779
FalI	AAGNNNNNCTT	2 cut(s)	336, 368
FatI	CATG	3 cut(s)	13, 31, 775
Fnu4HI	GCNGC	6 cut(s)	36, 327, 339, 456, 729, 732
FokI	GGATG	3 cut(s)	251, 392, 878
FriOI	GRGCYC	2 cut(s)	102, 559
Fsp4HI	GCNGC	6 cut(s)	36, 327, 339, 456, 729, 732
FspBI	CTAG	4 cut(s)	269, 548, 806, 953
GlaI	GCGC	1 cut(s)	459
GluI	GCNGC	6 cut(s)	36, 327, 339, 456, 729, 732
GsuI	CTGGAG	2 cut(s)	741, 815
HaeII	RGCGCY	1 cut(s)	461
HaeIII	GGCC	1 cut(s)	710
HhaI	GCGC	1 cut(s)	460
Hin1II	CATG	3 cut(s)	17, 35, 779
Hin6I	GCGC	1 cut(s)	458
HinP1I	GCGC	1 cut(s)	458
HindIII	AAGCTT	1 cut(s)	677
HinfI	GANTC	4 cut(s)	401, 506, 633, 790
HphI	GGTGA	3 cut(s)	170, 484, 1009
Hpy166II	GTNNAC	2 cut(s)	364, 545
Hpy188I	TCNGA	2 cut(s)	176, 964
Hpy188III	TCNNGA	9 cut(s)	14, 269, 398, 419, 464, 518, 695, 746, 794
Hpy8I	GTNNAC	2 cut(s)	364, 545
HpyAV	CCTTC	3 cut(s)	351, 402, 856
HpyCH4III	ACNGT	2 cut(s)	844, 897
HpyCH4IV	ACGT	2 cut(s)	487, 937
HpyF10VI	GCNNNNNNNGC	7 cut(s)	176, 326, 335, 344, 716, 725, 737
HpyF3I	CTNAG	6 cut(s)	94, 153, 173, 215, 353, 680
HpySE526I	ACGT	2 cut(s)	487, 937
Hsp92II	CATG	3 cut(s)	17, 35, 779
HspAI	GCGC	1 cut(s)	458
Kzo9I	GATC	1 cut(s)	162
LguI	GCTCTTC	2 cut(s)	204, 519
LmnI	GCTCC	2 cut(s)	418, 802
Lsp1109I	GCAGC	6 cut(s)	47, 313, 325, 467, 715, 718
LweI	GCATC	2 cut(s)	307, 921
MaeI	CTAG	4 cut(s)	269, 548, 806, 953
MaeII	ACGT	2 cut(s)	487, 937
MaeIII	GTNAC	1 cut(s)	746
MalI	GATC	1 cut(s)	164
MboI	GATC	1 cut(s)	162
MboII	GAAGA	8 cut(s)	221, 257, 322, 506, 581, 796, 917, 924
MhlI	GDGCHC	3 cut(s)	102, 547, 559
MluCI	AATT	5 cut(s)	288, 593, 606, 770, 1001
MlyI	GAGTC	2 cut(s)	515, 784
Mph1103I	ATGCAT	1 cut(s)	322
MseI	TTAA	3 cut(s)	291, 891, 1024
MspR9I	CCNGG	1 cut(s)	620
MvaI	CCWGG	1 cut(s)	620
MwoI	GCNNNNNNNGC	7 cut(s)	176, 326, 335, 344, 716, 725, 737
NdeII	GATC	1 cut(s)	162
NheI	GCTAGC	2 cut(s)	805, 952
NlaIII	CATG	3 cut(s)	17, 35, 779
NmuCI	GTSAC	1 cut(s)	746
NsiI	ATGCAT	1 cut(s)	322
NspI	RCATGY	1 cut(s)	35
NspV	TTCGAA	1 cut(s)	591
PaeR7I	CTCGAG	2 cut(s)	137, 419
PagI	TCATGA	1 cut(s)	13
PciSI	GCTCTTC	2 cut(s)	204, 519
PfeI	GAWTC	2 cut(s)	401, 633
PkrI	GCNGC	6 cut(s)	37, 328, 340, 457, 730, 733
PleI	GAGTC	2 cut(s)	514, 784
PpsI	GAGTC	2 cut(s)	514, 784
PpuMI	RGGWCCY	1 cut(s)	61
Psp124BI	GAGCTC	2 cut(s)	102, 559
Psp5II	RGGWCCY	1 cut(s)	61
Psp6I	CCWGG	1 cut(s)	618
PspGI	CCWGG	1 cut(s)	618
PspPI	GGNCC	2 cut(s)	61, 574
PspPPI	RGGWCCY	1 cut(s)	61
PspXI	VCTCGAGB	1 cut(s)	137
PsrI	GAACNNNNNNTAC	2 cut(s)	9, 41
PstI	CTGCAG	1 cut(s)	343
PstNI	CAGNNNCTG	2 cut(s)	86, 901
RsaI	GTAC	1 cut(s)	363
RsaNI	GTAC	1 cut(s)	362
SacI	GAGCTC	2 cut(s)	102, 559
SapI	GCTCTTC	2 cut(s)	204, 519
SaqAI	TTAA	3 cut(s)	291, 891, 1024
SatI	GCNGC	6 cut(s)	36, 327, 339, 456, 729, 732
Sau3AI	GATC	1 cut(s)	162
Sau96I	GGNCC	2 cut(s)	61, 574
SchI	GAGTC	2 cut(s)	515, 784
ScrFI	CCNGG	1 cut(s)	620
SduI	GDGCHC	3 cut(s)	102, 547, 559
SfaNI	GCATC	2 cut(s)	307, 921
SfcI	CTRYAG	2 cut(s)	204, 339
Sfr274I	CTCGAG	2 cut(s)	137, 419
SfuI	TTCGAA	1 cut(s)	591
SinI	GGWCC	2 cut(s)	61, 574
SlaI	CTCGAG	2 cut(s)	137, 419
SmlI	CTYRAG	6 cut(s)	137, 419, 518, 638, 701, 992
SmoI	CTYRAG	6 cut(s)	137, 419, 518, 638, 701, 992
Sse9I	AATT	5 cut(s)	288, 593, 606, 770, 1001
SsiI	CCGC	3 cut(s)	8, 78, 825
SspMI	CTAG	4 cut(s)	269, 548, 806, 953
SstI	GAGCTC	2 cut(s)	102, 559
StyD4I	CCNGG	1 cut(s)	618
StyI	CCWWGG	1 cut(s)	975
TaaI	ACNGT	2 cut(s)	844, 897
TaiI	ACGT	2 cut(s)	490, 940
TaqI	TCGA	4 cut(s)	138, 420, 500, 591
TasI	AATT	5 cut(s)	288, 593, 606, 770, 1001
TfiI	GAWTC	2 cut(s)	401, 633
Tru1I	TTAA	3 cut(s)	291, 891, 1024
Tru9I	TTAA	3 cut(s)	291, 891, 1024
TscAI	CASTG	1 cut(s)	902
TseFI	GTSAC	1 cut(s)	746
TseI	GCWGC	6 cut(s)	35, 326, 338, 455, 728, 731
Tsp45I	GTSAC	1 cut(s)	746
TspDTI	ATGAA	4 cut(s)	30, 237, 783, 882
TspRI	CASTG	1 cut(s)	902
VneI	GTGCAC	1 cut(s)	543
VpaK11BI	GGWCC	2 cut(s)	61, 574
XapI	RAATTY	1 cut(s)	1001
XbaI	TCTAGA	1 cut(s)	268
XceI	RCATGY	1 cut(s)	35
XhoI	CTCGAG	2 cut(s)	137, 419
XspI	CTAG	4 cut(s)	269, 548, 806, 953
Zsp2I	ATGCAT	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.