Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0009390

Physical Location & Seq

Genomic Coordinates Reverse (-)

442550 .. 446716

Gene Structure 4167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G008700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGCTGAAAATGATTCGCTTGCTCAGCTTCTCGCCTCTGCAGTTGACGCCGCCAAGAAAGCTGGCGAGATAATTCGAAAAGGGTTCTACGAGACCAAACATGTGGAGCATAAAAGCCAGGTGGATTTGGTCACAGAAACTGATAAGGCATGTGAAGATCTCATATTTAATCATCTCAAGAACCTTTACCCCACACACAAGTTCATTGGGGAAGAAACTACTGCTGCTTGTGGTGTAACAGAGCTGACTGACGACCCCACATGGATAGTTGATCCCCTGGATGGAACCACTAACTTTGTGCATGGGTTCCCCTTTGTCTGTGTCTCAATTGGTCTTACAATTGGAAAGATTCCAACAGTTGGTGTTGTTTACAATCCAATAATCGATGAGCTTTTTACTGGTGTACGTGGAGGAGGTGCATTTCTTAATGGAAAGCCTATAAAAGTATCATCTCAGACCGAACTTGTGAAGTCTCTCCTTGCAACTGAGGCTGGGACACAACGCGATAAATTAACTGTGGATGCTACTACAAACAGACTAAATAGCTTACTTTTTAAGGTGAGATCTCTTCGCATGAGTGGCTCCTGTGCACTGAACCTCTGTGGAATTGCATGTGGGAGGCTTGATCTATTTTGTGAACTCGGCTTTGGGGGTCCTTGGGATGTGGCAGGTGGTGCTGTGATTGTTACAGAAGCTGGAGGATCTGTGTATGATCCATCTGGTAAGGAGTTTGACATCACAGCTCAAAGAGTAGCAGCATCAAACCCTTTGCTTAAGGATGCATTTGTTGGGGCTTTGCTGGAATCGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0005996 GO:0006020 GO:0006021 GO:0006066 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008934 GO:0009056 GO:0009058 GO:0009108 GO:0009110 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0010347 GO:0016020 GO:0016051 GO:0016053 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0019637 GO:0019751 GO:0019752 GO:0019852 GO:0019853 GO:0023052 GO:0034637 GO:0042364 GO:0042578 GO:0043167 GO:0043169 GO:0043436 GO:0043647 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046164 GO:0046165 GO:0046173 GO:0046174 GO:0046364 GO:0046394 GO:0046434 GO:0046838 GO:0046855 GO:0046872 GO:0050308 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051716 GO:0052745 GO:0052834 GO:0065007 GO:0070456 GO:0071545 GO:0071704 GO:0071944 GO:0080167 GO:1901575 GO:1901576 GO:1901615 GO:1901616 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00053 ko00562 ko01100 ko01110 ko04070 map00053 map00562 map01100 map01110 map04070

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

271

Amino Acids

28.75

Weight (kDa)

5.03

Isoelectric Point (pI)

22.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02870 AT3G02870 AT3G02870
fragaria_vesca	FvH4_3g00781
malus_domestica	MD05G1359400.v1.1 MD10G1334900.v1.1
prunus_persica	Prupe.4G008700_v2.0.a1
pyrus_communis	pycom05g32460 pycom10g28470
rosa_chinensis	RchiOBHm_Chr5g0001031 RchiOBHm_Chr6g0245961
rosa_laevigata	RLG00000030915
rosa_multiflora	Rmu_sc0000255.1_g000031 Rmu_sc0002281.1_g000006 Rmu_sc0004189.1_g000002
rosa_rugosa	Rorug04G0389100
rosa_samantha	Rh5AG008300 Rh5BG010400 Rh5CG009000 Rh5DG009200
rosa_wichuraiana	Rw5G000850 Rw6G002740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	659
Acc36I	ACCTGC	1 cut(s)	659
AccB7I	CCANNNNNTGG	1 cut(s)	359
AccII	CGCG	1 cut(s)	504
AciI	CCGC	1 cut(s)	51
AclWI	GGATC	3 cut(s)	266, 707, 709
AcyI	GRCGYC	1 cut(s)	48
AfaI	GTAC	1 cut(s)	405
AfiI	CCNNNNNNNGG	2 cut(s)	281, 359
AflII	CTTAAG	1 cut(s)	773
AflIII	ACRYGT	1 cut(s)	100
AjnI	CCWGG	2 cut(s)	117, 276
AjuI	GAANNNNNNNTTGG	2 cut(s)	630, 662
AluBI	AGCT	7 cut(s)	28, 62, 244, 391, 546, 695, 743
AluI	AGCT	7 cut(s)	28, 62, 244, 391, 546, 695, 743
Alw21I	GWGCWC	1 cut(s)	592
Alw26I	GTCTC	3 cut(s)	86, 328, 477
Alw44I	GTGCAC	1 cut(s)	588
AlwI	GGATC	3 cut(s)	266, 707, 709
AlwNI	CAGNNNCTG	2 cut(s)	140, 695
ApaLI	GTGCAC	1 cut(s)	588
ApeKI	GCWGC	2 cut(s)	224, 755
AspS9I	GGNCC	1 cut(s)	653
AsuHPI	GGTGA	1 cut(s)	571
AsuII	TTCGAA	1 cut(s)	76
AvaII	GGWCC	1 cut(s)	653
BaeGI	GKGCMC	1 cut(s)	592
Bbv12I	GWGCWC	1 cut(s)	592
BbvI	GCAGC	2 cut(s)	211, 767
BccI	CCATC	2 cut(s)	275, 724
BciT130I	CCWGG	2 cut(s)	119, 278
BcoDI	GTCTC	3 cut(s)	86, 328, 477
BfmI	CTRYAG	1 cut(s)	39
BfrI	CTTAAG	1 cut(s)	773
BfuAI	ACCTGC	1 cut(s)	659
BglII	AGATCT	2 cut(s)	157, 563
BisI	GCNGC	3 cut(s)	51, 225, 756
BlpI	GCTNAGC	1 cut(s)	24
BlsI	GCNGC	3 cut(s)	52, 226, 757
Bme1390I	CCNGG	2 cut(s)	119, 278
Bme18I	GGWCC	1 cut(s)	653
BmgT120I	GGNCC	1 cut(s)	653
BmiI	GGNNCC	4 cut(s)	286, 308, 583, 654
BmrFI	CCNGG	2 cut(s)	119, 278
BmsI	GCATC	3 cut(s)	511, 767, 769
BpmI	CTGGAG	1 cut(s)	717
Bpu1102I	GCTNAGC	1 cut(s)	24
Bpu14I	TTCGAA	1 cut(s)	76
BpuEI	CTTGAG	1 cut(s)	161
Bsa29I	ATCGAT	1 cut(s)	384
BsaAI	YACGTR	1 cut(s)	407
BsaHI	GRCGYC	1 cut(s)	48
BsaI	GGTCTC	1 cut(s)	86
BsaJI	CCNNGG	2 cut(s)	276, 656
BsaXI	ACNNNNNCTCC	2 cut(s)	690, 720
Bsc4I	CCNNNNNNNGG	2 cut(s)	281, 359
Bse1I	ACTGG	1 cut(s)	403
BseBI	CCWGG	2 cut(s)	119, 278
BseCI	ATCGAT	1 cut(s)	384
BseDI	CCNNGG	2 cut(s)	276, 656
BseGI	GGATG	4 cut(s)	286, 526, 667, 784
BseLI	CCNNNNNNNGG	2 cut(s)	281, 359
BseMII	CTCAG	3 cut(s)	38, 467, 477
BseNI	ACTGG	1 cut(s)	403
BseRI	GAGGAG	1 cut(s)	426
BseSI	GKGCMC	1 cut(s)	592
BseXI	GCAGC	2 cut(s)	211, 767
BseYI	CCCAGC	1 cut(s)	491
Bsh1236I	CGCG	1 cut(s)	504
BshVI	ATCGAT	1 cut(s)	384
BsiHKAI	GWGCWC	1 cut(s)	592
BslFI	GGGAC	1 cut(s)	508
BslI	CCNNNNNNNGG	2 cut(s)	281, 359
BsmAI	GTCTC	3 cut(s)	86, 328, 477
BsmFI	GGGAC	1 cut(s)	508
Bso31I	GGTCTC	1 cut(s)	86
Bsp119I	TTCGAA	1 cut(s)	76
Bsp1286I	GDGCHC	1 cut(s)	592
Bsp143I	GATC	6 cut(s)	157, 271, 563, 625, 701, 712
Bsp1720I	GCTNAGC	1 cut(s)	24
BspACI	CCGC	1 cut(s)	51
BspCNI	CTCAG	3 cut(s)	37, 466, 478
BspDI	ATCGAT	1 cut(s)	384
BspFNI	CGCG	1 cut(s)	504
BspLI	GGNNCC	4 cut(s)	286, 308, 583, 654
BspMAI	CTGCAG	1 cut(s)	43
BspMI	ACCTGC	1 cut(s)	659
BspPI	GGATC	3 cut(s)	266, 707, 709
BspT104I	TTCGAA	1 cut(s)	76
BspTI	CTTAAG	1 cut(s)	773
BspTNI	GGTCTC	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	403
BssECI	CCNNGG	2 cut(s)	276, 656
BssMI	GATC	6 cut(s)	157, 271, 563, 625, 701, 712
BssNI	GRCGYC	1 cut(s)	48
BssT1I	CCWWGG	1 cut(s)	656
Bst2UI	CCWGG	2 cut(s)	119, 278
Bst4CI	ACNGT	2 cut(s)	358, 517
Bst6I	CTCTTC	1 cut(s)	573
BstACI	GRCGYC	1 cut(s)	48
BstAFI	CTTAAG	1 cut(s)	773
BstAPI	GCANNNNNTGC	1 cut(s)	674
BstBAI	YACGTR	1 cut(s)	407
BstBI	TTCGAA	1 cut(s)	76
BstC8I	GCNNGC	2 cut(s)	21, 64
BstDEI	CTNAG	3 cut(s)	24, 453, 486
BstF5I	GGATG	4 cut(s)	286, 526, 667, 784
BstFNI	CGCG	1 cut(s)	504
BstKTI	GATC	6 cut(s)	160, 274, 566, 628, 704, 715
BstMAI	GTCTC	3 cut(s)	86, 328, 477
BstMBI	GATC	6 cut(s)	157, 271, 563, 625, 701, 712
BstMWI	GCNNNNNNNGC	6 cut(s)	25, 47, 59, 488, 579, 674
BstNI	CCWGG	2 cut(s)	119, 278
BstNSI	RCATGY	3 cut(s)	104, 153, 615
BstSCI	CCNGG	2 cut(s)	117, 276
BstSFI	CTRYAG	1 cut(s)	39
BstSLI	GKGCMC	1 cut(s)	592
BstUI	CGCG	1 cut(s)	504
BstV1I	GCAGC	2 cut(s)	211, 767
BstX2I	RGATCY	3 cut(s)	157, 563, 701
BstXI	CCANNNNNNTGG	1 cut(s)	103
BstYI	RGATCY	3 cut(s)	157, 563, 701
Bsu15I	ATCGAT	1 cut(s)	384
BsuTUI	ATCGAT	1 cut(s)	384
BtsCI	GGATG	4 cut(s)	286, 526, 667, 784
BtsIMutI	CAGTG	1 cut(s)	590
BveI	ACCTGC	1 cut(s)	659
Cac8I	GCNNGC	2 cut(s)	21, 64
CaiI	CAGNNNCTG	2 cut(s)	140, 695
Cfr13I	GGNCC	1 cut(s)	653
ClaI	ATCGAT	1 cut(s)	384
CseI	GACGC	1 cut(s)	56
Csp6I	GTAC	1 cut(s)	404
CspCI	CAANNNNNGTGG	2 cut(s)	277, 312
CviAII	CATG	6 cut(s)	101, 150, 261, 302, 574, 612
CviQI	GTAC	1 cut(s)	404
DdeI	CTNAG	3 cut(s)	24, 453, 486
DpnI	GATC	6 cut(s)	159, 273, 565, 627, 703, 714
DpnII	GATC	6 cut(s)	157, 271, 563, 625, 701, 712
Eam1104I	CTCTTC	1 cut(s)	573
EarI	CTCTTC	1 cut(s)	573
Eco130I	CCWWGG	1 cut(s)	656
Eco31I	GGTCTC	1 cut(s)	86
Eco47I	GGWCC	1 cut(s)	653
EcoO109I	RGGNCCY	1 cut(s)	653
EcoRII	CCWGG	2 cut(s)	117, 276
EcoT14I	CCWWGG	1 cut(s)	656
EcoT22I	ATGCAT	1 cut(s)	784
ErhI	CCWWGG	1 cut(s)	656
FaeI	CATG	6 cut(s)	104, 153, 264, 305, 577, 615
FaqI	GGGAC	1 cut(s)	508
FatI	CATG	6 cut(s)	100, 149, 260, 301, 573, 611
Fnu4HI	GCNGC	3 cut(s)	51, 225, 756
FokI	GGATG	4 cut(s)	293, 533, 674, 791
Fsp4HI	GCNGC	3 cut(s)	51, 225, 756
GluI	GCNGC	3 cut(s)	51, 225, 756
GsaI	CCCAGC	1 cut(s)	495
GsuI	CTGGAG	1 cut(s)	717
HgaI	GACGC	1 cut(s)	56
Hin1I	GRCGYC	1 cut(s)	48
Hin1II	CATG	6 cut(s)	104, 153, 264, 305, 577, 615
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HinfI	GANTC	3 cut(s)	14, 349, 803
HphI	GGTGA	1 cut(s)	571
Hpy166II	GTNNAC	5 cut(s)	46, 370, 404, 590, 638
Hpy188I	TCNGA	2 cut(s)	456, 808
Hpy188III	TCNNGA	1 cut(s)	178
Hpy8I	GTNNAC	5 cut(s)	46, 370, 404, 590, 638
HpyCH4III	ACNGT	2 cut(s)	358, 517
HpyCH4IV	ACGT	1 cut(s)	406
HpyCH4V	TGCA	7 cut(s)	41, 301, 419, 482, 590, 611, 782
HpyF10VI	GCNNNNNNNGC	6 cut(s)	25, 47, 59, 488, 579, 674
HpyF3I	CTNAG	3 cut(s)	24, 453, 486
HpySE526I	ACGT	1 cut(s)	406
Hsp92I	GRCGYC	1 cut(s)	48
Hsp92II	CATG	6 cut(s)	104, 153, 264, 305, 577, 615
Kzo9I	GATC	6 cut(s)	157, 271, 563, 625, 701, 712
LmnI	GCTCC	2 cut(s)	106, 587
Lsp1109I	GCAGC	2 cut(s)	211, 767
LweI	GCATC	3 cut(s)	511, 767, 769
MaeII	ACGT	1 cut(s)	406
MaeIII	GTNAC	3 cut(s)	130, 235, 685
MalI	GATC	6 cut(s)	159, 273, 565, 627, 703, 714
MboI	GATC	6 cut(s)	157, 271, 563, 625, 701, 712
MboII	GAAGA	3 cut(s)	167, 224, 560
MfeI	CAATTG	2 cut(s)	327, 339
MflI	RGATCY	3 cut(s)	157, 563, 701
MhlI	GDGCHC	1 cut(s)	592
MluCI	AATT	5 cut(s)	72, 327, 339, 509, 606
MmeI	TCCRAC	1 cut(s)	377
MnlI	CCTC	7 cut(s)	46, 404, 407, 481, 608, 612, 692
Mph1103I	ATGCAT	1 cut(s)	784
MseI	TTAA	5 cut(s)	168, 426, 512, 555, 774
MspCI	CTTAAG	1 cut(s)	773
MspR9I	CCNGG	2 cut(s)	119, 278
MunI	CAATTG	2 cut(s)	327, 339
MvaI	CCWGG	2 cut(s)	119, 278
MvnI	CGCG	1 cut(s)	504
MwoI	GCNNNNNNNGC	6 cut(s)	25, 47, 59, 488, 579, 674
NdeII	GATC	6 cut(s)	157, 271, 563, 625, 701, 712
NlaIII	CATG	6 cut(s)	104, 153, 264, 305, 577, 615
NlaIV	GGNNCC	4 cut(s)	286, 308, 583, 654
NmeAIII	GCCGAG	1 cut(s)	621
NmuCI	GTSAC	1 cut(s)	130
NsiI	ATGCAT	1 cut(s)	784
NspI	RCATGY	3 cut(s)	104, 153, 615
NspV	TTCGAA	1 cut(s)	76
PaqCI	CACCTGC	1 cut(s)	659
PciI	ACATGT	1 cut(s)	100
PfeI	GAWTC	3 cut(s)	14, 349, 803
PflMI	CCANNNNNTGG	1 cut(s)	359
PkrI	GCNGC	3 cut(s)	52, 226, 757
Ppu21I	YACGTR	1 cut(s)	407
PpuMI	RGGWCCY	1 cut(s)	653
PscI	ACATGT	1 cut(s)	100
Psp5II	RGGWCCY	1 cut(s)	653
Psp6I	CCWGG	2 cut(s)	117, 276
PspFI	CCCAGC	1 cut(s)	491
PspGI	CCWGG	2 cut(s)	117, 276
PspN4I	GGNNCC	4 cut(s)	286, 308, 583, 654
PspPI	GGNCC	1 cut(s)	653
PspPPI	RGGWCCY	1 cut(s)	653
PstI	CTGCAG	1 cut(s)	43
PstNI	CAGNNNCTG	2 cut(s)	140, 695
PsuI	RGATCY	3 cut(s)	157, 563, 701
RsaI	GTAC	1 cut(s)	405
RsaNI	GTAC	1 cut(s)	404
SaqAI	TTAA	5 cut(s)	168, 426, 512, 555, 774
SatI	GCNGC	3 cut(s)	51, 225, 756
Sau3AI	GATC	6 cut(s)	157, 271, 563, 625, 701, 712
Sau96I	GGNCC	1 cut(s)	653
ScrFI	CCNGG	2 cut(s)	119, 278
SduI	GDGCHC	1 cut(s)	592
SfaNI	GCATC	3 cut(s)	511, 767, 769
SfcI	CTRYAG	1 cut(s)	39
SfuI	TTCGAA	1 cut(s)	76
SinI	GGWCC	1 cut(s)	653
SmlI	CTYRAG	2 cut(s)	176, 773
SmoI	CTYRAG	2 cut(s)	176, 773
Sse9I	AATT	5 cut(s)	72, 327, 339, 509, 606
SsiI	CCGC	1 cut(s)	51
StyD4I	CCNGG	2 cut(s)	117, 276
StyI	CCWWGG	1 cut(s)	656
TaaI	ACNGT	2 cut(s)	358, 517
TaiI	ACGT	1 cut(s)	409
TaqI	TCGA	2 cut(s)	76, 384
TaqII	GACCGA	1 cut(s)	473
TasI	AATT	5 cut(s)	72, 327, 339, 509, 606
TauI	GCSGC	1 cut(s)	53
TfiI	GAWTC	3 cut(s)	14, 349, 803
Tru1I	TTAA	5 cut(s)	168, 426, 512, 555, 774
Tru9I	TTAA	5 cut(s)	168, 426, 512, 555, 774
TscAI	CASTG	1 cut(s)	597
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	2 cut(s)	224, 755
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	1 cut(s)	193
TspRI	CASTG	1 cut(s)	597
Van91I	CCANNNNNTGG	1 cut(s)	359
Vha464I	CTTAAG	1 cut(s)	773
VneI	GTGCAC	1 cut(s)	588
VpaK11BI	GGWCC	1 cut(s)	653
XceI	RCATGY	3 cut(s)	104, 153, 615
Zsp2I	ATGCAT	1 cut(s)	784

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.