Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000255.1

Orthogroup ID

OG0009390

Physical Location & Seq

Genomic Coordinates Reverse (-)

153470 .. 156567

Gene Structure 3098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000255.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

atgcagacaccatgccacatttgggtcgaggatttgcttggtatgattagagatttagaacttagagtaatctcggcaaacttgatgtccggttactgccgaggagaacacagaaggctactagttcattttctagttgcaagacagggtatgggaaagtgggaatgcgattctagtttcacagttcagccagtatcgaataaggttcagcatattggcatattccatggatcttttagagacaagaatggcccctatatatatagacatgtggtacgtgaaagcttgctcacagacaaattgcaaacccctcttcatcactcatcaacatctacactgactggtgtattcaaaccacgcattcccctctctgtttctctcatctcacaaaaaacaatggctgaaaatgattcgcttgctcagttcttggcgtctgcagttgacgcggccaagaaagctggacagctaattcgaaaagggttctacgagatcaaacatgtggagcataaaggccaggtggatttggtcacagaaactgataaggcggctgaagatctcatatttaatcatctcaagcagctttatcccacacataagttcattggggaagaaactactgctgcttgtggtgtaacggagctgactgatgacccaacatggatagtggatcccctggatggcaccactaactttgtccatgggttcccctttgtctgtgtctctattggtcttactattggaaagattcccacagttggtgttgtttataatccaataattgatgagcttttcactggtatccgtggaggaggtgcatttctcaatgaaaatcctataaaagtgtcatctcaaagtgaacttgtgaattctctccttgcaactgaggctggaacaaaacgtgataaattaactgtggatgctactacagggaaactaaatagcttacttttcgaggtgagatcgcttcggatgagtggctcctgtgcactgaacctctgtggaattgcatgcgggaggcttgatcttttttatgaactcggctttgggggtccttgggatgtggcaggtggtgctgtgattgttacagaagctggaggatctgtgtatgacccatctggtaaggactttgacatcacatcgcaaagagtagcagcatcgaatcctctgctcaaggatgcctttgttaaggctttgcagaaatcagaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0005996 GO:0006020 GO:0006021 GO:0006066 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008934 GO:0009056 GO:0009058 GO:0009108 GO:0009110 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0010347 GO:0016020 GO:0016051 GO:0016053 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0019637 GO:0019751 GO:0019752 GO:0019852 GO:0019853 GO:0023052 GO:0034637 GO:0042364 GO:0042578 GO:0043167 GO:0043169 GO:0043436 GO:0043647 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046164 GO:0046165 GO:0046173 GO:0046174 GO:0046364 GO:0046394 GO:0046434 GO:0046838 GO:0046855 GO:0046872 GO:0050308 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051716 GO:0052745 GO:0052834 GO:0065007 GO:0070456 GO:0071545 GO:0071704 GO:0071944 GO:0080167 GO:1901575 GO:1901576 GO:1901615 GO:1901616 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00053 ko00562 ko01100 ko01110 ko04070 map00053 map00562 map01100 map01110 map04070

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

402

Amino Acids

43.92

Weight (kDa)

6.36

Isoelectric Point (pI)

30.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02870 AT3G02870 AT3G02870
fragaria_vesca	FvH4_3g00781
malus_domestica	MD05G1359400.v1.1 MD10G1334900.v1.1
prunus_persica	Prupe.4G008700_v2.0.a1
pyrus_communis	pycom05g32460 pycom10g28470
rosa_chinensis	RchiOBHm_Chr5g0001031 RchiOBHm_Chr6g0245961
rosa_laevigata	RLG00000030915
rosa_multiflora	Rmu_sc0000255.1_g000031 Rmu_sc0002281.1_g000006 Rmu_sc0004189.1_g000002
rosa_rugosa	Rorug04G0389100
rosa_samantha	Rh5AG008300 Rh5BG010400 Rh5CG009000 Rh5DG009200
rosa_wichuraiana	Rw5G000850 Rw6G002740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	768
AarI	CACCTGC	1 cut(s)	1055
Acc36I	ACCTGC	1 cut(s)	1055
AccB1I	GGYRCC	1 cut(s)	680
AccII	CGCG	1 cut(s)	446
AciI	CCGC	3 cut(s)	446, 545, 1011
AclWI	GGATC	4 cut(s)	238, 662, 675, 1105
AcoI	YGGCCR	1 cut(s)	447
AcsI	RAATTY	1 cut(s)	865
AcuI	CTGAAG	1 cut(s)	570
AcyI	GRCGYC	1 cut(s)	431
AfaI	GTAC	1 cut(s)	276
AfiI	CCNNNNNNNGG	3 cut(s)	22, 677, 755
AflIII	ACRYGT	2 cut(s)	268, 496
AgsI	TTSAA	1 cut(s)	352
AhlI	ACTAGT	1 cut(s)	121
AjnI	CCWGG	2 cut(s)	513, 672
AjuI	GAANNNNNNNTTGG	2 cut(s)	1026, 1058
AluBI	AGCT	8 cut(s)	285, 458, 466, 580, 640, 787, 942, 1091
AluI	AGCT	8 cut(s)	285, 458, 466, 580, 640, 787, 942, 1091
Alw21I	GWGCWC	1 cut(s)	988
Alw26I	GTCTC	2 cut(s)	234, 724
Alw44I	GTGCAC	1 cut(s)	984
AlwI	GGATC	4 cut(s)	238, 662, 675, 1105
AlwNI	CAGNNNCTG	2 cut(s)	536, 1091
AoxI	GGCC	3 cut(s)	250, 447, 511
ApaLI	GTGCAC	1 cut(s)	984
ApeKI	GCWGC	3 cut(s)	577, 620, 1151
ApoI	RAATTY	1 cut(s)	865
ArsI	GACNNNNNNTTYG	4 cut(s)	71, 103, 453, 485
AspS9I	GGNCC	2 cut(s)	251, 1049
AsuHPI	GGTGA	1 cut(s)	967
AsuII	TTCGAA	1 cut(s)	472
AvaII	GGWCC	1 cut(s)	1049
BaeGI	GKGCMC	1 cut(s)	988
BamHI	GGATCC	1 cut(s)	667
BanI	GGYRCC	1 cut(s)	680
Bbv12I	GWGCWC	1 cut(s)	988
BbvI	GCAGC	3 cut(s)	589, 607, 1163
BccI	CCATC	2 cut(s)	671, 1120
BcgI	CGANNNNNNTGC	2 cut(s)	1147, 1181
BciT130I	CCWGG	2 cut(s)	515, 674
BciVI	GTATCC	1 cut(s)	809
BcoDI	GTCTC	2 cut(s)	234, 724
BcuI	ACTAGT	1 cut(s)	121
BfaI	CTAG	3 cut(s)	122, 134, 174
BfmI	CTRYAG	2 cut(s)	435, 924
BfuAI	ACCTGC	1 cut(s)	1055
BfuI	GTATCC	1 cut(s)	809
BglII	AGATCT	1 cut(s)	553
BisI	GCNGC	5 cut(s)	447, 546, 578, 621, 1152
BlsI	GCNGC	5 cut(s)	448, 547, 579, 622, 1153
Bme1390I	CCNGG	2 cut(s)	515, 674
Bme18I	GGWCC	1 cut(s)	1049
BmgT120I	GGNCC	2 cut(s)	251, 1049
BmiI	GGNNCC	6 cut(s)	253, 669, 682, 704, 979, 1050
BmrFI	CCNGG	2 cut(s)	515, 674
BmsI	GCATC	3 cut(s)	907, 1163, 1165
BpmI	CTGGAG	1 cut(s)	1113
Bpu14I	TTCGAA	1 cut(s)	472
BpuEI	CTTGAG	2 cut(s)	557, 1154
BsaAI	YACGTR	1 cut(s)	278
BsaHI	GRCGYC	1 cut(s)	431
BsaJI	CCNNGG	6 cut(s)	100, 226, 672, 697, 802, 1052
BsaWI	WCCGGW	1 cut(s)	89
BsaXI	ACNNNNNCTCC	2 cut(s)	1086, 1116
Bsc4I	CCNNNNNNNGG	3 cut(s)	22, 677, 755
Bse1I	ACTGG	3 cut(s)	191, 346, 799
BseBI	CCWGG	2 cut(s)	515, 674
BseDI	CCNNGG	6 cut(s)	100, 226, 672, 697, 802, 1052
BseGI	GGATG	5 cut(s)	682, 922, 975, 1063, 1180
BseLI	CCNNNNNNNGG	3 cut(s)	22, 677, 755
BseMII	CTCAG	2 cut(s)	434, 873
BseNI	ACTGG	3 cut(s)	191, 346, 799
BseRI	GAGGAG	2 cut(s)	117, 822
BseSI	GKGCMC	1 cut(s)	988
BseXI	GCAGC	3 cut(s)	589, 607, 1163
Bsh1236I	CGCG	1 cut(s)	446
BshFI	GGCC	3 cut(s)	252, 449, 513
BshNI	GGYRCC	1 cut(s)	680
BsiHKAI	GWGCWC	1 cut(s)	988
BsiSI	CCGG	1 cut(s)	90
BslI	CCNNNNNNNGG	3 cut(s)	22, 677, 755
BsmAI	GTCTC	2 cut(s)	234, 724
BsmI	GAATGC	2 cut(s)	170, 360
BsnI	GGCC	3 cut(s)	252, 449, 513
Bsp119I	TTCGAA	1 cut(s)	472
Bsp1286I	GDGCHC	1 cut(s)	988
Bsp143I	GATC	7 cut(s)	230, 489, 553, 667, 959, 1021, 1097
Bsp19I	CCATGG	2 cut(s)	226, 697
BspACI	CCGC	3 cut(s)	446, 545, 1011
BspANI	GGCC	3 cut(s)	252, 449, 513
BspCNI	CTCAG	2 cut(s)	433, 874
BspFNI	CGCG	1 cut(s)	446
BspLI	GGNNCC	6 cut(s)	253, 669, 682, 704, 979, 1050
BspMAI	CTGCAG	1 cut(s)	439
BspMI	ACCTGC	1 cut(s)	1055
BspPI	GGATC	4 cut(s)	238, 662, 675, 1105
BspT104I	TTCGAA	1 cut(s)	472
BspT107I	GGYRCC	1 cut(s)	680
BsrI	ACTGG	3 cut(s)	191, 346, 799
BssECI	CCNNGG	6 cut(s)	100, 226, 672, 697, 802, 1052
BssMI	GATC	7 cut(s)	230, 489, 553, 667, 959, 1021, 1097
BssNI	GRCGYC	1 cut(s)	431
BssT1I	CCWWGG	3 cut(s)	226, 697, 1052
Bst2UI	CCWGG	2 cut(s)	515, 674
Bst4CI	ACNGT	3 cut(s)	184, 754, 913
Bst6I	CTCTTC	1 cut(s)	318
BstACI	GRCGYC	1 cut(s)	431
BstAPI	GCANNNNNTGC	1 cut(s)	1070
BstBAI	YACGTR	1 cut(s)	278
BstBI	TTCGAA	1 cut(s)	472
BstC8I	GCNNGC	3 cut(s)	287, 417, 1009
BstDEI	CTNAG	3 cut(s)	62, 420, 882
BstDSI	CCRYGG	3 cut(s)	226, 697, 802
BstF5I	GGATG	5 cut(s)	682, 922, 975, 1063, 1180
BstFNI	CGCG	1 cut(s)	446
BstKTI	GATC	7 cut(s)	233, 492, 556, 670, 962, 1024, 1100
BstMAI	GTCTC	2 cut(s)	234, 724
BstMBI	GATC	7 cut(s)	230, 489, 553, 667, 959, 1021, 1097
BstMWI	GCNNNNNNNGC	4 cut(s)	443, 455, 884, 1070
BstNI	CCWGG	2 cut(s)	515, 674
BstNSI	RCATGY	3 cut(s)	272, 500, 1011
BstSCI	CCNGG	2 cut(s)	513, 672
BstSFI	CTRYAG	2 cut(s)	435, 924
BstSLI	GKGCMC	1 cut(s)	988
BstUI	CGCG	1 cut(s)	446
BstV1I	GCAGC	3 cut(s)	589, 607, 1163
BstX2I	RGATCY	4 cut(s)	230, 553, 667, 1097
BstYI	RGATCY	4 cut(s)	230, 553, 667, 1097
BsuI	GTATCC	1 cut(s)	809
BsuRI	GGCC	3 cut(s)	252, 449, 513
BtgI	CCRYGG	3 cut(s)	226, 697, 802
BtgZI	GCGATG	1 cut(s)	1122
BtsCI	GGATG	5 cut(s)	682, 922, 975, 1063, 1180
BtsIMutI	CAGTG	3 cut(s)	335, 792, 986
BveI	ACCTGC	1 cut(s)	1055
Cac8I	GCNNGC	3 cut(s)	287, 417, 1009
CaiI	CAGNNNCTG	2 cut(s)	536, 1091
Cfr13I	GGNCC	2 cut(s)	251, 1049
CseI	GACGC	2 cut(s)	420, 452
Csp6I	GTAC	1 cut(s)	275
CspCI	CAANNNNNGTGG	2 cut(s)	673, 708
CviAII	CATG	7 cut(s)	12, 227, 269, 497, 657, 698, 1008
CviQI	GTAC	1 cut(s)	275
DdeI	CTNAG	3 cut(s)	62, 420, 882
DpnI	GATC	7 cut(s)	232, 491, 555, 669, 961, 1023, 1099
DpnII	GATC	7 cut(s)	230, 489, 553, 667, 959, 1021, 1097
EaeI	YGGCCR	1 cut(s)	447
Eam1104I	CTCTTC	1 cut(s)	318
EarI	CTCTTC	1 cut(s)	318
Eco130I	CCWWGG	3 cut(s)	226, 697, 1052
Eco47I	GGWCC	1 cut(s)	1049
Eco57I	CTGAAG	1 cut(s)	570
EcoO109I	RGGNCCY	1 cut(s)	1049
EcoRI	GAATTC	1 cut(s)	865
EcoRII	CCWGG	2 cut(s)	513, 672
EcoT14I	CCWWGG	3 cut(s)	226, 697, 1052
ErhI	CCWWGG	3 cut(s)	226, 697, 1052
FaeI	CATG	7 cut(s)	15, 230, 272, 500, 660, 701, 1011
FalI	AAGNNNNNCTT	2 cut(s)	1163, 1195
FatI	CATG	7 cut(s)	11, 226, 268, 496, 656, 697, 1007
FauI	CCCGC	1 cut(s)	1004
Fnu4HI	GCNGC	5 cut(s)	447, 546, 578, 621, 1152
FokI	GGATG	5 cut(s)	689, 929, 982, 1070, 1187
Fsp4HI	GCNGC	5 cut(s)	447, 546, 578, 621, 1152
FspBI	CTAG	3 cut(s)	122, 134, 174
GluI	GCNGC	5 cut(s)	447, 546, 578, 621, 1152
GsuI	CTGGAG	1 cut(s)	1113
HaeIII	GGCC	3 cut(s)	252, 449, 513
HapII	CCGG	1 cut(s)	90
HgaI	GACGC	2 cut(s)	420, 452
Hin1I	GRCGYC	1 cut(s)	431
Hin1II	CATG	7 cut(s)	15, 230, 272, 500, 660, 701, 1011
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HindIII	AAGCTT	1 cut(s)	283
HinfI	GANTC	4 cut(s)	170, 410, 745, 1159
HpaII	CCGG	1 cut(s)	90
HphI	GGTGA	1 cut(s)	967
Hpy166II	GTNNAC	3 cut(s)	442, 857, 986
Hpy188I	TCNGA	2 cut(s)	969, 1204
Hpy8I	GTNNAC	3 cut(s)	442, 857, 986
HpyAV	CCTTC	1 cut(s)	108
HpyCH4III	ACNGT	3 cut(s)	184, 754, 913
HpyCH4IV	ACGT	2 cut(s)	277, 898
HpyCH4V	TGCA	9 cut(s)	4, 140, 304, 437, 815, 878, 986, 1007, 1195
HpyF10VI	GCNNNNNNNGC	4 cut(s)	443, 455, 884, 1070
HpyF3I	CTNAG	3 cut(s)	62, 420, 882
HpySE526I	ACGT	2 cut(s)	277, 898
Hsp92I	GRCGYC	1 cut(s)	431
Hsp92II	CATG	7 cut(s)	15, 230, 272, 500, 660, 701, 1011
Kzo9I	GATC	7 cut(s)	230, 489, 553, 667, 959, 1021, 1097
LmnI	GCTCC	3 cut(s)	502, 637, 983
Lsp1109I	GCAGC	3 cut(s)	589, 607, 1163
LweI	GCATC	3 cut(s)	907, 1163, 1165
MaeI	CTAG	3 cut(s)	122, 134, 174
MaeII	ACGT	2 cut(s)	277, 898
MaeIII	GTNAC	4 cut(s)	92, 526, 631, 1081
MalI	GATC	7 cut(s)	232, 491, 555, 669, 961, 1023, 1099
MboI	GATC	7 cut(s)	230, 489, 553, 667, 959, 1021, 1097
MboII	GAAGA	3 cut(s)	305, 563, 620
MflI	RGATCY	4 cut(s)	230, 553, 667, 1097
MhlI	GDGCHC	1 cut(s)	988
MluCI	AATT	6 cut(s)	299, 468, 777, 865, 905, 1002
MseI	TTAA	3 cut(s)	564, 908, 1185
MspI	CCGG	1 cut(s)	90
MspR9I	CCNGG	2 cut(s)	515, 674
Mva1269I	GAATGC	2 cut(s)	170, 360
MvaI	CCWGG	2 cut(s)	515, 674
MvnI	CGCG	1 cut(s)	446
MwoI	GCNNNNNNNGC	4 cut(s)	443, 455, 884, 1070
NcoI	CCATGG	2 cut(s)	226, 697
NdeII	GATC	7 cut(s)	230, 489, 553, 667, 959, 1021, 1097
NlaIII	CATG	7 cut(s)	15, 230, 272, 500, 660, 701, 1011
NlaIV	GGNNCC	6 cut(s)	253, 669, 682, 704, 979, 1050
NmeAIII	GCCGAG	3 cut(s)	53, 125, 1017
NmuCI	GTSAC	1 cut(s)	526
NspI	RCATGY	3 cut(s)	272, 500, 1011
NspV	TTCGAA	1 cut(s)	472
PaeI	GCATGC	1 cut(s)	1011
PaqCI	CACCTGC	1 cut(s)	1055
PciI	ACATGT	2 cut(s)	268, 496
PctI	GAATGC	2 cut(s)	170, 360
PfeI	GAWTC	4 cut(s)	170, 410, 745, 1159
PkrI	GCNGC	5 cut(s)	448, 547, 579, 622, 1153
Ppu21I	YACGTR	1 cut(s)	278
PpuMI	RGGWCCY	1 cut(s)	1049
PscI	ACATGT	2 cut(s)	268, 496
PsiI	TTATAA	1 cut(s)	768
Psp5II	RGGWCCY	1 cut(s)	1049
Psp6I	CCWGG	2 cut(s)	513, 672
PspGI	CCWGG	2 cut(s)	513, 672
PspN4I	GGNNCC	6 cut(s)	253, 669, 682, 704, 979, 1050
PspPI	GGNCC	2 cut(s)	251, 1049
PspPPI	RGGWCCY	1 cut(s)	1049
PstI	CTGCAG	1 cut(s)	439
PstNI	CAGNNNCTG	2 cut(s)	536, 1091
PsuI	RGATCY	4 cut(s)	230, 553, 667, 1097
RsaI	GTAC	1 cut(s)	276
RsaNI	GTAC	1 cut(s)	275
SaqAI	TTAA	3 cut(s)	564, 908, 1185
SatI	GCNGC	5 cut(s)	447, 546, 578, 621, 1152
Sau3AI	GATC	7 cut(s)	230, 489, 553, 667, 959, 1021, 1097
Sau96I	GGNCC	2 cut(s)	251, 1049
ScrFI	CCNGG	2 cut(s)	515, 674
SduI	GDGCHC	1 cut(s)	988
SfaNI	GCATC	3 cut(s)	907, 1163, 1165
SfcI	CTRYAG	2 cut(s)	435, 924
SfuI	TTCGAA	1 cut(s)	472
SinI	GGWCC	1 cut(s)	1049
SmlI	CTYRAG	2 cut(s)	572, 1169
SmoI	CTYRAG	2 cut(s)	572, 1169
SpeI	ACTAGT	1 cut(s)	121
SphI	GCATGC	1 cut(s)	1011
Sse9I	AATT	6 cut(s)	299, 468, 777, 865, 905, 1002
SsiI	CCGC	3 cut(s)	446, 545, 1011
SspMI	CTAG	3 cut(s)	122, 134, 174
StyD4I	CCNGG	2 cut(s)	513, 672
StyI	CCWWGG	3 cut(s)	226, 697, 1052
TaaI	ACNGT	3 cut(s)	184, 754, 913
TaiI	ACGT	2 cut(s)	280, 901
TaqI	TCGA	5 cut(s)	27, 197, 472, 951, 1157
TasI	AATT	6 cut(s)	299, 468, 777, 865, 905, 1002
TauI	GCSGC	2 cut(s)	449, 548
TfiI	GAWTC	4 cut(s)	170, 410, 745, 1159
Tru1I	TTAA	3 cut(s)	564, 908, 1185
Tru9I	TTAA	3 cut(s)	564, 908, 1185
TscAI	CASTG	3 cut(s)	342, 799, 993
TseFI	GTSAC	1 cut(s)	526
TseI	GCWGC	3 cut(s)	577, 620, 1151
Tsp45I	GTSAC	1 cut(s)	526
TspDTI	ATGAA	5 cut(s)	116, 305, 589, 840, 1047
TspGWI	ACGGA	2 cut(s)	650, 791
TspRI	CASTG	3 cut(s)	342, 799, 993
VneI	GTGCAC	1 cut(s)	984
VpaK11BI	GGWCC	1 cut(s)	1049
XapI	RAATTY	1 cut(s)	865
XceI	RCATGY	3 cut(s)	272, 500, 1011
XcmI	CCANNNNNNNNNTGG	1 cut(s)	18
XspI	CTAG	3 cut(s)	122, 134, 174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.