Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0009390

Physical Location & Seq

Genomic Coordinates Forward (+)

29072541 .. 29075181

Gene Structure 2641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g28470.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGCGGAAAACGATTCGCTTGCTCAGTTCCTCTCCTCCGCCGTTGATGCAGCCAAGAAAGCCGGCCAGATAATTCGAAAAGGGTTCTACGAGACCAAGCATGTGGAGCACAAAGGCCAGGTGGATTTGGTCACGGAAACTGATAAGGCATGCGAAGATCTAATATTTAATCATCTCAAGCAGCTTTACCCCACTCATAAGTTCATTGGGGAAGAGACTACTGCTGCTAATGGTGTAACGGAGCTGACTGATGACCCCACATGGATAGTTGATCCCCTGGACGGAACCACTAACTTTGTACATGGGTTCCCCTTTGTCTGTGTGTCAATCGGCCTTACAATTGGAAAGATACCTACAGTTGGTGTTGTTTACAATCCAATAATTGACGAGCTCTTTACTGGCATACGCGGAGGAGGTGCATTTCTCAATGGAAATCCCATAAAAGTATCATCTAAGAACGAACTTGTGAAGTCTCTCCTTGCAACTGAGGTTGGAGTAAAACGTGATAACCTAACAGTGGATGCAACCACAGGGAGAATTAATCGCTTACTATTTAAGGTGAGATCTATTCGCATGAGCGGCTCCTGTGCACTGAACCTCTGTGGAATTGCATGTGGGAGGATTGATCTATTTTATGAGCTTGGCTTTGGGGGTCCTTGGGATGTTGCAGGTGGTGCTGTGATTGTTACAGAAGCCGGAGGGTGTGTGTATGATCGATCAAATCTGGTAAGGAGTTTGGCATCACATCTCAAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0005996 GO:0006020 GO:0006021 GO:0006066 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008934 GO:0009056 GO:0009058 GO:0009108 GO:0009110 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0010347 GO:0016020 GO:0016051 GO:0016053 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0019637 GO:0019751 GO:0019752 GO:0019852 GO:0019853 GO:0023052 GO:0034637 GO:0042364 GO:0042578 GO:0043167 GO:0043169 GO:0043436 GO:0043647 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046164 GO:0046165 GO:0046173 GO:0046174 GO:0046364 GO:0046394 GO:0046434 GO:0046838 GO:0046855 GO:0046872 GO:0050308 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051716 GO:0052745 GO:0052834 GO:0065007 GO:0070456 GO:0071545 GO:0071704 GO:0071944 GO:0080167 GO:1901575 GO:1901576 GO:1901615 GO:1901616 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00053 ko00562 ko01100 ko01110 ko04070 map00053 map00562 map01100 map01110 map04070

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

253

Amino Acids

27.15

Weight (kDa)

5.89

Isoelectric Point (pI)

22.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02870 AT3G02870 AT3G02870
fragaria_vesca	FvH4_3g00781
malus_domestica	MD05G1359400.v1.1 MD10G1334900.v1.1
prunus_persica	Prupe.4G008700_v2.0.a1
pyrus_communis	pycom05g32460 pycom10g28470
rosa_chinensis	RchiOBHm_Chr5g0001031 RchiOBHm_Chr6g0245961
rosa_laevigata	RLG00000030915
rosa_multiflora	Rmu_sc0000255.1_g000031 Rmu_sc0002281.1_g000006 Rmu_sc0004189.1_g000002
rosa_rugosa	Rorug04G0389100
rosa_samantha	Rh5AG008300 Rh5BG010400 Rh5CG009000 Rh5DG009200
rosa_wichuraiana	Rw5G000850 Rw6G002740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	659
Acc36I	ACCTGC	1 cut(s)	659
AccBSI	CCGCTC	1 cut(s)	579
AccII	CGCG	1 cut(s)	408
AciI	CCGC	4 cut(s)	5, 39, 408, 579
AclWI	GGATC	1 cut(s)	266
AcoI	YGGCCR	1 cut(s)	64
AfaI	GTAC	1 cut(s)	300
AfiI	CCNNNNNNNGG	3 cut(s)	281, 359, 517
AjnI	CCWGG	2 cut(s)	117, 276
AluBI	AGCT	4 cut(s)	184, 244, 391, 640
AluI	AGCT	4 cut(s)	184, 244, 391, 640
Alw21I	GWGCWC	3 cut(s)	111, 393, 592
Alw26I	GTCTC	3 cut(s)	86, 209, 477
Alw44I	GTGCAC	1 cut(s)	588
AlwI	GGATC	1 cut(s)	266
AoxI	GGCC	3 cut(s)	64, 115, 331
ApaLI	GTGCAC	1 cut(s)	588
ApeKI	GCWGC	3 cut(s)	50, 181, 224
AseI	ATTAAT	1 cut(s)	540
AspS9I	GGNCC	1 cut(s)	653
AsuHPI	GGTGA	1 cut(s)	571
AsuII	TTCGAA	1 cut(s)	76
AvaII	GGWCC	1 cut(s)	653
BaeGI	GKGCMC	1 cut(s)	592
BanII	GRGCYC	1 cut(s)	393
Bbv12I	GWGCWC	3 cut(s)	111, 393, 592
BbvI	GCAGC	3 cut(s)	62, 193, 211
BceAI	ACGGC	1 cut(s)	26
BcgI	CGANNNNNNTGC	1 cut(s)	36
BciT130I	CCWGG	2 cut(s)	119, 278
BcoDI	GTCTC	3 cut(s)	86, 209, 477
BfmI	CTRYAG	1 cut(s)	354
BfuAI	ACCTGC	1 cut(s)	659
BglII	AGATCT	2 cut(s)	157, 563
BisI	GCNGC	4 cut(s)	51, 182, 225, 580
BlsI	GCNGC	4 cut(s)	52, 183, 226, 581
Bme1390I	CCNGG	2 cut(s)	119, 278
Bme18I	GGWCC	1 cut(s)	653
BmgT120I	GGNCC	1 cut(s)	653
BmiI	GGNNCC	4 cut(s)	286, 308, 583, 654
BmrFI	CCNGG	2 cut(s)	119, 278
BmsI	GCATC	3 cut(s)	37, 511, 749
Bpu14I	TTCGAA	1 cut(s)	76
BpuEI	CTTGAG	1 cut(s)	161
Bsa29I	ATCGAT	1 cut(s)	715
BsaI	GGTCTC	1 cut(s)	86
BsaJI	CCNNGG	2 cut(s)	276, 656
BsaXI	ACNNNNNCTCC	2 cut(s)	690, 720
Bsc4I	CCNNNNNNNGG	3 cut(s)	281, 359, 517
Bse118I	RCCGGY	1 cut(s)	62
Bse1I	ACTGG	1 cut(s)	403
BseBI	CCWGG	2 cut(s)	119, 278
BseCI	ATCGAT	1 cut(s)	715
BseDI	CCNNGG	2 cut(s)	276, 656
BseGI	GGATG	2 cut(s)	526, 667
BseLI	CCNNNNNNNGG	3 cut(s)	281, 359, 517
BseMII	CTCAG	2 cut(s)	38, 477
BseNI	ACTGG	1 cut(s)	403
BseRI	GAGGAG	2 cut(s)	25, 426
BseSI	GKGCMC	1 cut(s)	592
BseXI	GCAGC	3 cut(s)	62, 193, 211
Bsh1236I	CGCG	1 cut(s)	408
BshFI	GGCC	3 cut(s)	66, 117, 333
BshVI	ATCGAT	1 cut(s)	715
BsiHKAI	GWGCWC	3 cut(s)	111, 393, 592
BsiSI	CCGG	2 cut(s)	63, 696
BslI	CCNNNNNNNGG	3 cut(s)	281, 359, 517
BsmAI	GTCTC	3 cut(s)	86, 209, 477
BsnI	GGCC	3 cut(s)	66, 117, 333
Bso31I	GGTCTC	1 cut(s)	86
Bsp119I	TTCGAA	1 cut(s)	76
Bsp1286I	GDGCHC	3 cut(s)	111, 393, 592
Bsp1407I	TGTACA	1 cut(s)	298
Bsp143I	GATC	6 cut(s)	157, 271, 563, 625, 712, 716
BspACI	CCGC	4 cut(s)	5, 39, 408, 579
BspANI	GGCC	3 cut(s)	66, 117, 333
BspCNI	CTCAG	2 cut(s)	37, 478
BspDI	ATCGAT	1 cut(s)	715
BspFNI	CGCG	1 cut(s)	408
BspLI	GGNNCC	4 cut(s)	286, 308, 583, 654
BspMI	ACCTGC	1 cut(s)	659
BspPI	GGATC	1 cut(s)	266
BspT104I	TTCGAA	1 cut(s)	76
BspTNI	GGTCTC	1 cut(s)	86
BsrBI	CCGCTC	1 cut(s)	579
BsrFI	RCCGGY	1 cut(s)	62
BsrGI	TGTACA	1 cut(s)	298
BsrI	ACTGG	1 cut(s)	403
BssAI	RCCGGY	1 cut(s)	62
BssECI	CCNNGG	2 cut(s)	276, 656
BssMI	GATC	6 cut(s)	157, 271, 563, 625, 712, 716
BssT1I	CCWWGG	1 cut(s)	656
Bst2UI	CCWGG	2 cut(s)	119, 278
Bst4CI	ACNGT	2 cut(s)	358, 517
Bst6I	CTCTTC	1 cut(s)	207
BstAPI	GCANNNNNTGC	1 cut(s)	674
BstAUI	TGTACA	1 cut(s)	298
BstBI	TTCGAA	1 cut(s)	76
BstC8I	GCNNGC	3 cut(s)	21, 64, 151
BstDEI	CTNAG	3 cut(s)	24, 453, 486
BstF5I	GGATG	2 cut(s)	526, 667
BstFNI	CGCG	1 cut(s)	408
BstKTI	GATC	6 cut(s)	160, 274, 566, 628, 715, 719
BstMAI	GTCTC	3 cut(s)	86, 209, 477
BstMBI	GATC	6 cut(s)	157, 271, 563, 625, 712, 716
BstMWI	GCNNNNNNNGC	5 cut(s)	47, 59, 106, 579, 674
BstNI	CCWGG	2 cut(s)	119, 278
BstNSI	RCATGY	3 cut(s)	104, 153, 615
BstSCI	CCNGG	2 cut(s)	117, 276
BstSFI	CTRYAG	1 cut(s)	354
BstSLI	GKGCMC	1 cut(s)	592
BstUI	CGCG	1 cut(s)	408
BstV1I	GCAGC	3 cut(s)	62, 193, 211
BstX2I	RGATCY	2 cut(s)	157, 563
BstXI	CCANNNNNNTGG	1 cut(s)	103
BstYI	RGATCY	2 cut(s)	157, 563
Bsu15I	ATCGAT	1 cut(s)	715
BsuRI	GGCC	3 cut(s)	66, 117, 333
BsuTUI	ATCGAT	1 cut(s)	715
BtsCI	GGATG	2 cut(s)	526, 667
BtsIMutI	CAGTG	2 cut(s)	522, 590
BveI	ACCTGC	1 cut(s)	659
Cac8I	GCNNGC	3 cut(s)	21, 64, 151
Cfr10I	RCCGGY	1 cut(s)	62
Cfr13I	GGNCC	1 cut(s)	653
ClaI	ATCGAT	1 cut(s)	715
Csp6I	GTAC	1 cut(s)	299
CspCI	CAANNNNNGTGG	2 cut(s)	277, 312
CviAII	CATG	6 cut(s)	101, 150, 261, 302, 574, 612
CviQI	GTAC	1 cut(s)	299
DdeI	CTNAG	3 cut(s)	24, 453, 486
DpnI	GATC	6 cut(s)	159, 273, 565, 627, 714, 718
DpnII	GATC	6 cut(s)	157, 271, 563, 625, 712, 716
EaeI	YGGCCR	1 cut(s)	64
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
EciI	GGCGGA	2 cut(s)	20, 28
Ecl136II	GAGCTC	1 cut(s)	391
Eco130I	CCWWGG	1 cut(s)	656
Eco24I	GRGCYC	1 cut(s)	393
Eco31I	GGTCTC	1 cut(s)	86
Eco47I	GGWCC	1 cut(s)	653
Eco53kI	GAGCTC	1 cut(s)	391
EcoICRI	GAGCTC	1 cut(s)	391
EcoO109I	RGGNCCY	1 cut(s)	653
EcoRII	CCWGG	2 cut(s)	117, 276
EcoT14I	CCWWGG	1 cut(s)	656
EcoT38I	GRGCYC	1 cut(s)	393
ErhI	CCWWGG	1 cut(s)	656
FaeI	CATG	6 cut(s)	104, 153, 264, 305, 577, 615
FatI	CATG	6 cut(s)	100, 149, 260, 301, 573, 611
Fnu4HI	GCNGC	4 cut(s)	51, 182, 225, 580
FokI	GGATG	2 cut(s)	533, 674
FriOI	GRGCYC	1 cut(s)	393
Fsp4HI	GCNGC	4 cut(s)	51, 182, 225, 580
GluI	GCNGC	4 cut(s)	51, 182, 225, 580
HaeIII	GGCC	3 cut(s)	66, 117, 333
HapII	CCGG	2 cut(s)	63, 696
Hin1II	CATG	6 cut(s)	104, 153, 264, 305, 577, 615
HinfI	GANTC	1 cut(s)	14
HpaII	CCGG	2 cut(s)	63, 696
HphI	GGTGA	1 cut(s)	571
Hpy166II	GTNNAC	2 cut(s)	370, 590
Hpy8I	GTNNAC	2 cut(s)	370, 590
HpyCH4III	ACNGT	2 cut(s)	358, 517
HpyCH4IV	ACGT	1 cut(s)	502
HpyCH4V	TGCA	7 cut(s)	50, 419, 482, 524, 590, 611, 668
HpyF10VI	GCNNNNNNNGC	5 cut(s)	47, 59, 106, 579, 674
HpyF3I	CTNAG	3 cut(s)	24, 453, 486
HpySE526I	ACGT	1 cut(s)	502
Hsp92II	CATG	6 cut(s)	104, 153, 264, 305, 577, 615
KroI	GCCGGC	1 cut(s)	62
KroNI	GCCGGC	1 cut(s)	64
Kzo9I	GATC	6 cut(s)	157, 271, 563, 625, 712, 716
LmnI	GCTCC	3 cut(s)	106, 241, 587
Lsp1109I	GCAGC	3 cut(s)	62, 193, 211
LweI	GCATC	3 cut(s)	37, 511, 749
MaeII	ACGT	1 cut(s)	502
MaeIII	GTNAC	3 cut(s)	130, 235, 685
MalI	GATC	6 cut(s)	159, 273, 565, 627, 714, 718
MbiI	CCGCTC	1 cut(s)	579
MboI	GATC	6 cut(s)	157, 271, 563, 625, 712, 716
MboII	GAAGA	2 cut(s)	167, 224
MfeI	CAATTG	1 cut(s)	339
MflI	RGATCY	2 cut(s)	157, 563
MhlI	GDGCHC	3 cut(s)	111, 393, 592
MluCI	AATT	5 cut(s)	72, 339, 381, 537, 606
MmeI	TCCRAC	1 cut(s)	472
MnlI	CCTC	8 cut(s)	41, 46, 404, 407, 481, 608, 612, 692
MroNI	GCCGGC	1 cut(s)	62
MseI	TTAA	3 cut(s)	168, 540, 555
MspI	CCGG	2 cut(s)	63, 696
MspR9I	CCNGG	2 cut(s)	119, 278
MunI	CAATTG	1 cut(s)	339
MvaI	CCWGG	2 cut(s)	119, 278
MvnI	CGCG	1 cut(s)	408
MwoI	GCNNNNNNNGC	5 cut(s)	47, 59, 106, 579, 674
NaeI	GCCGGC	1 cut(s)	64
NdeII	GATC	6 cut(s)	157, 271, 563, 625, 712, 716
NgoMIV	GCCGGC	1 cut(s)	62
NlaIII	CATG	6 cut(s)	104, 153, 264, 305, 577, 615
NlaIV	GGNNCC	4 cut(s)	286, 308, 583, 654
NmuCI	GTSAC	1 cut(s)	130
NspI	RCATGY	3 cut(s)	104, 153, 615
NspV	TTCGAA	1 cut(s)	76
PaeI	GCATGC	1 cut(s)	153
PaqCI	CACCTGC	1 cut(s)	659
PdiI	GCCGGC	1 cut(s)	64
PfeI	GAWTC	1 cut(s)	14
PkrI	GCNGC	4 cut(s)	52, 183, 226, 581
PpuMI	RGGWCCY	1 cut(s)	653
PshBI	ATTAAT	1 cut(s)	540
Psp124BI	GAGCTC	1 cut(s)	393
Psp5II	RGGWCCY	1 cut(s)	653
Psp6I	CCWGG	2 cut(s)	117, 276
PspGI	CCWGG	2 cut(s)	117, 276
PspN4I	GGNNCC	4 cut(s)	286, 308, 583, 654
PspPI	GGNCC	1 cut(s)	653
PspPPI	RGGWCCY	1 cut(s)	653
PsuI	RGATCY	2 cut(s)	157, 563
RsaI	GTAC	1 cut(s)	300
RsaNI	GTAC	1 cut(s)	299
SacI	GAGCTC	1 cut(s)	393
SaqAI	TTAA	3 cut(s)	168, 540, 555
SatI	GCNGC	4 cut(s)	51, 182, 225, 580
Sau3AI	GATC	6 cut(s)	157, 271, 563, 625, 712, 716
Sau96I	GGNCC	1 cut(s)	653
ScrFI	CCNGG	2 cut(s)	119, 278
SduI	GDGCHC	3 cut(s)	111, 393, 592
SfaNI	GCATC	3 cut(s)	37, 511, 749
SfcI	CTRYAG	1 cut(s)	354
SfuI	TTCGAA	1 cut(s)	76
SinI	GGWCC	1 cut(s)	653
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
SphI	GCATGC	1 cut(s)	153
Sse9I	AATT	5 cut(s)	72, 339, 381, 537, 606
SsiI	CCGC	4 cut(s)	5, 39, 408, 579
SspI	AATATT	1 cut(s)	165
SstI	GAGCTC	1 cut(s)	393
StyD4I	CCNGG	2 cut(s)	117, 276
StyI	CCWWGG	1 cut(s)	656
TaaI	ACNGT	2 cut(s)	358, 517
TaiI	ACGT	1 cut(s)	505
TaqI	TCGA	2 cut(s)	76, 715
TasI	AATT	5 cut(s)	72, 339, 381, 537, 606
TatI	WGTACW	1 cut(s)	298
TauI	GCSGC	1 cut(s)	582
TfiI	GAWTC	1 cut(s)	14
Tru1I	TTAA	3 cut(s)	168, 540, 555
Tru9I	TTAA	3 cut(s)	168, 540, 555
TscAI	CASTG	2 cut(s)	522, 597
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	3 cut(s)	50, 181, 224
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	1 cut(s)	193
TspGWI	ACGGA	3 cut(s)	149, 254, 297
TspRI	CASTG	2 cut(s)	522, 597
VneI	GTGCAC	1 cut(s)	588
VpaK11BI	GGWCC	1 cut(s)	653
VspI	ATTAAT	1 cut(s)	540
XceI	RCATGY	3 cut(s)	104, 153, 615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.