Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004189.1

Orthogroup ID

OG0009390

Physical Location & Seq

Genomic Coordinates Reverse (-)

6136 .. 8968

Gene Structure 2833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004189.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

atggctgaaaatgattcgcttgctcagttcttggcgtctgcagttgacgcggccaagaaagctggacagctaattcgaaaagggttctacgagatcaaacatgtggagcataaaggccaggtggatttggtcacagaaactgataaggcggctgaagatctcatatttaatcatctcaagcagctttatcccacacataagttcattggggaagaaactactgctgcttgtggtgtaacggagctgactgatgacccaacatggatagtggatcccctggatggcaccactaactttgtccatgggttcccctttgtctgtgtctctattggtcttactattggaaagattcccacagttggtgttgtttataatccaataattgatgaggctggaacaaaacgtgataaattaactgtggatgctactacagggaaactaaatagcttacttttcgaggtgagatcgcttcggatgagtggctcctgtgcactgaacctctgtggaattgcatgcgggaggcttgatcttttttatgaactcggctttgggggtccttgggatgtggcaggtggtgctgtgattgttacagaagctggaggatctgtttatgacccatctggtaaggactttgacatcacatcgcaaagagtagcagcatcgaatcctctgctcaaggatgcctttgttaaggctttgcagaaatcagaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0005996 GO:0006020 GO:0006021 GO:0006066 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008934 GO:0009056 GO:0009058 GO:0009108 GO:0009110 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0010347 GO:0016020 GO:0016051 GO:0016053 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0019637 GO:0019751 GO:0019752 GO:0019852 GO:0019853 GO:0023052 GO:0034637 GO:0042364 GO:0042578 GO:0043167 GO:0043169 GO:0043436 GO:0043647 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046164 GO:0046165 GO:0046173 GO:0046174 GO:0046364 GO:0046394 GO:0046434 GO:0046838 GO:0046855 GO:0046872 GO:0050308 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051716 GO:0052745 GO:0052834 GO:0065007 GO:0070456 GO:0071545 GO:0071704 GO:0071944 GO:0080167 GO:1901575 GO:1901576 GO:1901615 GO:1901616 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00053 ko00562 ko01100 ko01110 ko04070 map00053 map00562 map01100 map01110 map04070

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

237

Amino Acids

25.41

Weight (kDa)

5.05

Isoelectric Point (pI)

25.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02870 AT3G02870 AT3G02870
fragaria_vesca	FvH4_3g00781
malus_domestica	MD05G1359400.v1.1 MD10G1334900.v1.1
prunus_persica	Prupe.4G008700_v2.0.a1
pyrus_communis	pycom05g32460 pycom10g28470
rosa_chinensis	RchiOBHm_Chr5g0001031 RchiOBHm_Chr6g0245961
rosa_laevigata	RLG00000030915
rosa_multiflora	Rmu_sc0000255.1_g000031 Rmu_sc0002281.1_g000006 Rmu_sc0004189.1_g000002
rosa_rugosa	Rorug04G0389100
rosa_samantha	Rh5AG008300 Rh5BG010400 Rh5CG009000 Rh5DG009200
rosa_wichuraiana	Rw5G000850 Rw6G002740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	372
AarI	CACCTGC	1 cut(s)	560
Acc36I	ACCTGC	1 cut(s)	560
AccB1I	GGYRCC	1 cut(s)	284
AccII	CGCG	1 cut(s)	50
AciI	CCGC	3 cut(s)	50, 149, 516
AclWI	GGATC	3 cut(s)	266, 279, 610
AcoI	YGGCCR	1 cut(s)	51
AcuI	CTGAAG	1 cut(s)	174
AcyI	GRCGYC	1 cut(s)	35
AfiI	CCNNNNNNNGG	2 cut(s)	281, 359
AflIII	ACRYGT	1 cut(s)	100
AjnI	CCWGG	2 cut(s)	117, 276
AjuI	GAANNNNNNNTTGG	2 cut(s)	531, 563
AluBI	AGCT	6 cut(s)	62, 70, 184, 244, 447, 596
AluI	AGCT	6 cut(s)	62, 70, 184, 244, 447, 596
Alw21I	GWGCWC	1 cut(s)	493
Alw26I	GTCTC	1 cut(s)	328
Alw44I	GTGCAC	1 cut(s)	489
AlwI	GGATC	3 cut(s)	266, 279, 610
AlwNI	CAGNNNCTG	2 cut(s)	140, 596
AoxI	GGCC	2 cut(s)	51, 115
ApaLI	GTGCAC	1 cut(s)	489
ApeKI	GCWGC	3 cut(s)	181, 224, 656
ArsI	GACNNNNNNTTYG	2 cut(s)	57, 89
AspS9I	GGNCC	1 cut(s)	554
AsuHPI	GGTGA	1 cut(s)	472
AsuII	TTCGAA	1 cut(s)	76
AvaII	GGWCC	1 cut(s)	554
BaeGI	GKGCMC	1 cut(s)	493
BamHI	GGATCC	1 cut(s)	271
BanI	GGYRCC	1 cut(s)	284
Bbv12I	GWGCWC	1 cut(s)	493
BbvI	GCAGC	3 cut(s)	193, 211, 668
BccI	CCATC	2 cut(s)	275, 625
BcgI	CGANNNNNNTGC	2 cut(s)	652, 686
BciT130I	CCWGG	2 cut(s)	119, 278
BcoDI	GTCTC	1 cut(s)	328
BfmI	CTRYAG	2 cut(s)	39, 429
BfuAI	ACCTGC	1 cut(s)	560
BglII	AGATCT	1 cut(s)	157
BisI	GCNGC	5 cut(s)	51, 150, 182, 225, 657
BlsI	GCNGC	5 cut(s)	52, 151, 183, 226, 658
Bme1390I	CCNGG	2 cut(s)	119, 278
Bme18I	GGWCC	1 cut(s)	554
BmgT120I	GGNCC	1 cut(s)	554
BmiI	GGNNCC	5 cut(s)	273, 286, 308, 484, 555
BmrFI	CCNGG	2 cut(s)	119, 278
BmsI	GCATC	3 cut(s)	412, 668, 670
BpmI	CTGGAG	1 cut(s)	618
Bpu14I	TTCGAA	1 cut(s)	76
BpuEI	CTTGAG	2 cut(s)	161, 659
BsaHI	GRCGYC	1 cut(s)	35
BsaJI	CCNNGG	3 cut(s)	276, 301, 557
BsaXI	ACNNNNNCTCC	2 cut(s)	591, 621
Bsc4I	CCNNNNNNNGG	2 cut(s)	281, 359
BseBI	CCWGG	2 cut(s)	119, 278
BseDI	CCNNGG	3 cut(s)	276, 301, 557
BseGI	GGATG	5 cut(s)	286, 427, 480, 568, 685
BseLI	CCNNNNNNNGG	2 cut(s)	281, 359
BseMII	CTCAG	1 cut(s)	38
BseSI	GKGCMC	1 cut(s)	493
BseXI	GCAGC	3 cut(s)	193, 211, 668
Bsh1236I	CGCG	1 cut(s)	50
BshFI	GGCC	2 cut(s)	53, 117
BshNI	GGYRCC	1 cut(s)	284
BsiHKAI	GWGCWC	1 cut(s)	493
BslI	CCNNNNNNNGG	2 cut(s)	281, 359
BsmAI	GTCTC	1 cut(s)	328
BsnI	GGCC	2 cut(s)	53, 117
Bsp119I	TTCGAA	1 cut(s)	76
Bsp1286I	GDGCHC	1 cut(s)	493
Bsp143I	GATC	6 cut(s)	93, 157, 271, 464, 526, 602
Bsp19I	CCATGG	1 cut(s)	301
BspACI	CCGC	3 cut(s)	50, 149, 516
BspANI	GGCC	2 cut(s)	53, 117
BspCNI	CTCAG	1 cut(s)	37
BspFNI	CGCG	1 cut(s)	50
BspLI	GGNNCC	5 cut(s)	273, 286, 308, 484, 555
BspMAI	CTGCAG	1 cut(s)	43
BspMI	ACCTGC	1 cut(s)	560
BspPI	GGATC	3 cut(s)	266, 279, 610
BspT104I	TTCGAA	1 cut(s)	76
BspT107I	GGYRCC	1 cut(s)	284
BssECI	CCNNGG	3 cut(s)	276, 301, 557
BssMI	GATC	6 cut(s)	93, 157, 271, 464, 526, 602
BssNI	GRCGYC	1 cut(s)	35
BssT1I	CCWWGG	2 cut(s)	301, 557
Bst2UI	CCWGG	2 cut(s)	119, 278
Bst4CI	ACNGT	2 cut(s)	358, 418
BstACI	GRCGYC	1 cut(s)	35
BstAPI	GCANNNNNTGC	1 cut(s)	575
BstBI	TTCGAA	1 cut(s)	76
BstC8I	GCNNGC	2 cut(s)	21, 514
BstDEI	CTNAG	1 cut(s)	24
BstDSI	CCRYGG	1 cut(s)	301
BstF5I	GGATG	5 cut(s)	286, 427, 480, 568, 685
BstFNI	CGCG	1 cut(s)	50
BstKTI	GATC	6 cut(s)	96, 160, 274, 467, 529, 605
BstMAI	GTCTC	1 cut(s)	328
BstMBI	GATC	6 cut(s)	93, 157, 271, 464, 526, 602
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 59, 575
BstNI	CCWGG	2 cut(s)	119, 278
BstNSI	RCATGY	2 cut(s)	104, 516
BstSCI	CCNGG	2 cut(s)	117, 276
BstSFI	CTRYAG	2 cut(s)	39, 429
BstSLI	GKGCMC	1 cut(s)	493
BstUI	CGCG	1 cut(s)	50
BstV1I	GCAGC	3 cut(s)	193, 211, 668
BstX2I	RGATCY	3 cut(s)	157, 271, 602
BstYI	RGATCY	3 cut(s)	157, 271, 602
BsuRI	GGCC	2 cut(s)	53, 117
BtgI	CCRYGG	1 cut(s)	301
BtgZI	GCGATG	1 cut(s)	627
BtsCI	GGATG	5 cut(s)	286, 427, 480, 568, 685
BtsIMutI	CAGTG	1 cut(s)	491
BveI	ACCTGC	1 cut(s)	560
Cac8I	GCNNGC	2 cut(s)	21, 514
CaiI	CAGNNNCTG	2 cut(s)	140, 596
Cfr13I	GGNCC	1 cut(s)	554
CseI	GACGC	2 cut(s)	24, 56
CspCI	CAANNNNNGTGG	2 cut(s)	277, 312
CviAII	CATG	4 cut(s)	101, 261, 302, 513
DdeI	CTNAG	1 cut(s)	24
DpnI	GATC	6 cut(s)	95, 159, 273, 466, 528, 604
DpnII	GATC	6 cut(s)	93, 157, 271, 464, 526, 602
EaeI	YGGCCR	1 cut(s)	51
Eco130I	CCWWGG	2 cut(s)	301, 557
Eco47I	GGWCC	1 cut(s)	554
Eco57I	CTGAAG	1 cut(s)	174
EcoO109I	RGGNCCY	1 cut(s)	554
EcoRII	CCWGG	2 cut(s)	117, 276
EcoT14I	CCWWGG	2 cut(s)	301, 557
ErhI	CCWWGG	2 cut(s)	301, 557
FaeI	CATG	4 cut(s)	104, 264, 305, 516
FalI	AAGNNNNNCTT	2 cut(s)	668, 700
FatI	CATG	4 cut(s)	100, 260, 301, 512
FauI	CCCGC	1 cut(s)	509
Fnu4HI	GCNGC	5 cut(s)	51, 150, 182, 225, 657
FokI	GGATG	5 cut(s)	293, 434, 487, 575, 692
Fsp4HI	GCNGC	5 cut(s)	51, 150, 182, 225, 657
GluI	GCNGC	5 cut(s)	51, 150, 182, 225, 657
GsuI	CTGGAG	1 cut(s)	618
HaeIII	GGCC	2 cut(s)	53, 117
HgaI	GACGC	2 cut(s)	24, 56
Hin1I	GRCGYC	1 cut(s)	35
Hin1II	CATG	4 cut(s)	104, 264, 305, 516
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HinfI	GANTC	3 cut(s)	14, 349, 664
HphI	GGTGA	1 cut(s)	472
Hpy166II	GTNNAC	2 cut(s)	46, 491
Hpy188I	TCNGA	2 cut(s)	474, 709
Hpy8I	GTNNAC	2 cut(s)	46, 491
HpyCH4III	ACNGT	2 cut(s)	358, 418
HpyCH4IV	ACGT	1 cut(s)	403
HpyCH4V	TGCA	4 cut(s)	41, 491, 512, 700
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 59, 575
HpyF3I	CTNAG	1 cut(s)	24
HpySE526I	ACGT	1 cut(s)	403
Hsp92I	GRCGYC	1 cut(s)	35
Hsp92II	CATG	4 cut(s)	104, 264, 305, 516
Kzo9I	GATC	6 cut(s)	93, 157, 271, 464, 526, 602
LmnI	GCTCC	3 cut(s)	106, 241, 488
Lsp1109I	GCAGC	3 cut(s)	193, 211, 668
LweI	GCATC	3 cut(s)	412, 668, 670
MaeII	ACGT	1 cut(s)	403
MaeIII	GTNAC	3 cut(s)	130, 235, 586
MalI	GATC	6 cut(s)	95, 159, 273, 466, 528, 604
MboI	GATC	6 cut(s)	93, 157, 271, 464, 526, 602
MboII	GAAGA	2 cut(s)	167, 224
MflI	RGATCY	3 cut(s)	157, 271, 602
MhlI	GDGCHC	1 cut(s)	493
MluCI	AATT	4 cut(s)	72, 381, 410, 507
MnlI	CCTC	6 cut(s)	382, 451, 509, 513, 593, 678
MseI	TTAA	3 cut(s)	168, 413, 690
MspR9I	CCNGG	2 cut(s)	119, 278
MvaI	CCWGG	2 cut(s)	119, 278
MvnI	CGCG	1 cut(s)	50
MwoI	GCNNNNNNNGC	3 cut(s)	47, 59, 575
NcoI	CCATGG	1 cut(s)	301
NdeII	GATC	6 cut(s)	93, 157, 271, 464, 526, 602
NlaIII	CATG	4 cut(s)	104, 264, 305, 516
NlaIV	GGNNCC	5 cut(s)	273, 286, 308, 484, 555
NmeAIII	GCCGAG	1 cut(s)	522
NmuCI	GTSAC	1 cut(s)	130
NspI	RCATGY	2 cut(s)	104, 516
NspV	TTCGAA	1 cut(s)	76
PaeI	GCATGC	1 cut(s)	516
PaqCI	CACCTGC	1 cut(s)	560
PciI	ACATGT	1 cut(s)	100
PfeI	GAWTC	3 cut(s)	14, 349, 664
PkrI	GCNGC	5 cut(s)	52, 151, 183, 226, 658
PpuMI	RGGWCCY	1 cut(s)	554
PscI	ACATGT	1 cut(s)	100
PsiI	TTATAA	1 cut(s)	372
Psp5II	RGGWCCY	1 cut(s)	554
Psp6I	CCWGG	2 cut(s)	117, 276
PspGI	CCWGG	2 cut(s)	117, 276
PspN4I	GGNNCC	5 cut(s)	273, 286, 308, 484, 555
PspPI	GGNCC	1 cut(s)	554
PspPPI	RGGWCCY	1 cut(s)	554
PstI	CTGCAG	1 cut(s)	43
PstNI	CAGNNNCTG	2 cut(s)	140, 596
PsuI	RGATCY	3 cut(s)	157, 271, 602
SaqAI	TTAA	3 cut(s)	168, 413, 690
SatI	GCNGC	5 cut(s)	51, 150, 182, 225, 657
Sau3AI	GATC	6 cut(s)	93, 157, 271, 464, 526, 602
Sau96I	GGNCC	1 cut(s)	554
ScrFI	CCNGG	2 cut(s)	119, 278
SduI	GDGCHC	1 cut(s)	493
SfaNI	GCATC	3 cut(s)	412, 668, 670
SfcI	CTRYAG	2 cut(s)	39, 429
SfuI	TTCGAA	1 cut(s)	76
SinI	GGWCC	1 cut(s)	554
SmlI	CTYRAG	2 cut(s)	176, 674
SmoI	CTYRAG	2 cut(s)	176, 674
SphI	GCATGC	1 cut(s)	516
Sse9I	AATT	4 cut(s)	72, 381, 410, 507
SsiI	CCGC	3 cut(s)	50, 149, 516
StyD4I	CCNGG	2 cut(s)	117, 276
StyI	CCWWGG	2 cut(s)	301, 557
TaaI	ACNGT	2 cut(s)	358, 418
TaiI	ACGT	1 cut(s)	406
TaqI	TCGA	3 cut(s)	76, 456, 662
TasI	AATT	4 cut(s)	72, 381, 410, 507
TauI	GCSGC	2 cut(s)	53, 152
TfiI	GAWTC	3 cut(s)	14, 349, 664
Tru1I	TTAA	3 cut(s)	168, 413, 690
Tru9I	TTAA	3 cut(s)	168, 413, 690
TscAI	CASTG	1 cut(s)	498
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	3 cut(s)	181, 224, 656
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	2 cut(s)	193, 552
TspGWI	ACGGA	1 cut(s)	254
TspRI	CASTG	1 cut(s)	498
VneI	GTGCAC	1 cut(s)	489
VpaK11BI	GGWCC	1 cut(s)	554
XceI	RCATGY	2 cut(s)	104, 516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.