Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0009390

Physical Location & Seq

Genomic Coordinates Forward (+)

31859269 .. 31861776

Gene Structure 2508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g32460.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGTGCTACGTGAAGGCTCCAACACTACAATCTGAACACAAATCCATCGTCGACAGTACTCATTCGCTTGCTCAGTTCCTCTCCTCCGCCGTTGATGCAGCCAAGAAAGCCGGCCAGATGATTCGAAAAGGGTTCTACGAGACCAAGCATGTGGAGTACAAAGGCCAGGTGGATCTGGTCACGGAAACTGATAAGGCATGCGAAGATCTCATATTTAATCATCTCAAGCAACTTTACCCCACTCATAAGTTCATCGGGGAAGAGACTACTGCTGCTAATGGTGTAACGGAGCTGACTGATGACCCCACATGGCTAGTTGATCCTGTGGATGGAACCATTAACTTTGTACATGGATTCCCCTTTGTCTGTGTGTCAATCGGCCTTACAATTGGAAAGATTCCTACTGTTGGTGTTGTTTACAATCCAATAATTGACGAGCTCTTTACTGGCATACGTGGAGGAGGTGCATTTCTCAATGGAAATCCTATAAAAGTATCATCTCAGACCGAACTTGTGAAGTCTCTCCTTGTCACTGAGGTTGGAGTAGAACGTGATAACGTAACAGTGGATGCAACCACAGGGACAATTAATCGCCTACTTTTTGAGGTGAGATCTATTCGCATTGGAGGCTCCTGTGCACTGGCCCTCTGTGGAATAGCATGTGGGAGGCTTGATCTATTTTACATGCACGGCTATGGGGGTCCTTGGGATGTTGCAGGTGGTGCTGTAATTGTTACAGAAGCTGGAGGGTGTGTTTATGATCCATCTGGTGAGGAGCTTGACATGACATCTCGAAGAGTAGCAGCATCAAACCCTCTGCTTAAGGAAGCATTTGTTGAGGTTTTGCGAGAATCGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0005996 GO:0006020 GO:0006021 GO:0006066 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008934 GO:0009056 GO:0009058 GO:0009108 GO:0009110 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0010347 GO:0016020 GO:0016051 GO:0016053 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0019637 GO:0019751 GO:0019752 GO:0019852 GO:0019853 GO:0023052 GO:0034637 GO:0042364 GO:0042578 GO:0043167 GO:0043169 GO:0043436 GO:0043647 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046164 GO:0046165 GO:0046173 GO:0046174 GO:0046364 GO:0046394 GO:0046434 GO:0046838 GO:0046855 GO:0046872 GO:0050308 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051716 GO:0052745 GO:0052834 GO:0065007 GO:0070456 GO:0071545 GO:0071704 GO:0071944 GO:0080167 GO:1901575 GO:1901576 GO:1901615 GO:1901616 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00053 ko00562 ko01100 ko01110 ko04070 map00053 map00562 map01100 map01110 map04070

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

287

Amino Acids

30.83

Weight (kDa)

5.05

Isoelectric Point (pI)

30.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02870 AT3G02870 AT3G02870
fragaria_vesca	FvH4_3g00781
malus_domestica	MD05G1359400.v1.1 MD10G1334900.v1.1
prunus_persica	Prupe.4G008700_v2.0.a1
pyrus_communis	pycom05g32460 pycom10g28470
rosa_chinensis	RchiOBHm_Chr5g0001031 RchiOBHm_Chr6g0245961
rosa_laevigata	RLG00000030915
rosa_multiflora	Rmu_sc0000255.1_g000031 Rmu_sc0002281.1_g000006 Rmu_sc0004189.1_g000002
rosa_rugosa	Rorug04G0389100
rosa_samantha	Rh5AG008300 Rh5BG010400 Rh5CG009000 Rh5DG009200
rosa_wichuraiana	Rw5G000850 Rw6G002740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	707
Acc36I	ACCTGC	1 cut(s)	707
AccI	GTMKAC	1 cut(s)	51
AciI	CCGC	1 cut(s)	87
AclWI	GGATC	3 cut(s)	180, 314, 755
AcoI	YGGCCR	1 cut(s)	112
AfaI	GTAC	3 cut(s)	58, 158, 348
AfiI	CCNNNNNNNGG	2 cut(s)	329, 407
AflII	CTTAAG	1 cut(s)	821
AjnI	CCWGG	1 cut(s)	165
AluBI	AGCT	4 cut(s)	292, 439, 743, 778
AluI	AGCT	4 cut(s)	292, 439, 743, 778
Alw21I	GWGCWC	2 cut(s)	441, 640
Alw26I	GTCTC	3 cut(s)	134, 257, 525
Alw44I	GTGCAC	1 cut(s)	636
AlwI	GGATC	3 cut(s)	180, 314, 755
AlwNI	CAGNNNCTG	1 cut(s)	743
AoxI	GGCC	4 cut(s)	112, 163, 379, 642
ApaLI	GTGCAC	1 cut(s)	636
ApeKI	GCWGC	3 cut(s)	98, 272, 803
ArsI	GACNNNNNNTTYG	2 cut(s)	33, 65
AseI	ATTAAT	1 cut(s)	588
AspS9I	GGNCC	2 cut(s)	643, 701
AsuHPI	GGTGA	2 cut(s)	619, 782
AsuII	TTCGAA	1 cut(s)	124
AvaII	GGWCC	1 cut(s)	701
BaeGI	GKGCMC	1 cut(s)	640
BanII	GRGCYC	1 cut(s)	441
Bbv12I	GWGCWC	2 cut(s)	441, 640
BbvI	GCAGC	3 cut(s)	110, 259, 815
BccI	CCATC	3 cut(s)	53, 323, 772
BceAI	ACGGC	2 cut(s)	74, 706
BciT130I	CCWGG	1 cut(s)	167
BcoDI	GTCTC	3 cut(s)	134, 257, 525
BfaI	CTAG	1 cut(s)	314
BfrI	CTTAAG	1 cut(s)	821
BfuAI	ACCTGC	1 cut(s)	707
BglII	AGATCT	2 cut(s)	205, 611
BisI	GCNGC	3 cut(s)	99, 273, 804
BlsI	GCNGC	3 cut(s)	100, 274, 805
BmcAI	AGTACT	1 cut(s)	58
Bme1390I	CCNGG	1 cut(s)	167
Bme18I	GGWCC	1 cut(s)	701
BmgT120I	GGNCC	2 cut(s)	643, 701
BmiI	GGNNCC	4 cut(s)	18, 334, 631, 702
BmrFI	CCNGG	1 cut(s)	167
BmsI	GCATC	3 cut(s)	85, 559, 815
BpmI	CTGGAG	1 cut(s)	765
Bpu14I	TTCGAA	1 cut(s)	124
BpuEI	CTTGAG	1 cut(s)	209
BsaAI	YACGTR	2 cut(s)	10, 455
BsaI	GGTCTC	1 cut(s)	134
BsaJI	CCNNGG	1 cut(s)	704
BsaXI	ACNNNNNCTCC	2 cut(s)	738, 768
Bsc4I	CCNNNNNNNGG	2 cut(s)	329, 407
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	2 cut(s)	451, 645
BseBI	CCWGG	1 cut(s)	167
BseDI	CCNNGG	1 cut(s)	704
BseGI	GGATG	3 cut(s)	334, 574, 715
BseLI	CCNNNNNNNGG	2 cut(s)	329, 407
BseMII	CTCAG	3 cut(s)	86, 515, 525
BseNI	ACTGG	2 cut(s)	451, 645
BseRI	GAGGAG	3 cut(s)	73, 474, 788
BseSI	GKGCMC	1 cut(s)	640
BseXI	GCAGC	3 cut(s)	110, 259, 815
BshFI	GGCC	4 cut(s)	114, 165, 381, 644
BsiHKAI	GWGCWC	2 cut(s)	441, 640
BsiSI	CCGG	1 cut(s)	111
BslFI	GGGAC	1 cut(s)	595
BslI	CCNNNNNNNGG	2 cut(s)	329, 407
BsmAI	GTCTC	3 cut(s)	134, 257, 525
BsmFI	GGGAC	1 cut(s)	595
BsnI	GGCC	4 cut(s)	114, 165, 381, 644
Bso31I	GGTCTC	1 cut(s)	134
Bsp119I	TTCGAA	1 cut(s)	124
Bsp1286I	GDGCHC	2 cut(s)	441, 640
Bsp1407I	TGTACA	1 cut(s)	346
Bsp143I	GATC	6 cut(s)	172, 205, 319, 611, 673, 760
BspACI	CCGC	1 cut(s)	87
BspANI	GGCC	4 cut(s)	114, 165, 381, 644
BspCNI	CTCAG	3 cut(s)	85, 514, 526
BspLI	GGNNCC	4 cut(s)	18, 334, 631, 702
BspMI	ACCTGC	1 cut(s)	707
BspPI	GGATC	3 cut(s)	180, 314, 755
BspT104I	TTCGAA	1 cut(s)	124
BspTI	CTTAAG	1 cut(s)	821
BspTNI	GGTCTC	1 cut(s)	134
BsrFI	RCCGGY	1 cut(s)	110
BsrGI	TGTACA	1 cut(s)	346
BsrI	ACTGG	2 cut(s)	451, 645
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	1 cut(s)	704
BssMI	GATC	6 cut(s)	172, 205, 319, 611, 673, 760
BssT1I	CCWWGG	1 cut(s)	704
Bst2UI	CCWGG	1 cut(s)	167
Bst4CI	ACNGT	3 cut(s)	56, 406, 565
Bst6I	CTCTTC	2 cut(s)	255, 790
BstAFI	CTTAAG	1 cut(s)	821
BstAPI	GCANNNNNTGC	1 cut(s)	722
BstAUI	TGTACA	1 cut(s)	346
BstBAI	YACGTR	2 cut(s)	10, 455
BstBI	TTCGAA	1 cut(s)	124
BstC8I	GCNNGC	3 cut(s)	69, 112, 199
BstDEI	CTNAG	3 cut(s)	72, 501, 534
BstF5I	GGATG	3 cut(s)	334, 574, 715
BstKTI	GATC	6 cut(s)	175, 208, 322, 614, 676, 763
BstMAI	GTCTC	3 cut(s)	134, 257, 525
BstMBI	GATC	6 cut(s)	172, 205, 319, 611, 673, 760
BstMWI	GCNNNNNNNGC	4 cut(s)	95, 107, 627, 722
BstNI	CCWGG	1 cut(s)	167
BstNSI	RCATGY	4 cut(s)	152, 201, 663, 688
BstSCI	CCNGG	1 cut(s)	165
BstSLI	GKGCMC	1 cut(s)	640
BstV1I	GCAGC	3 cut(s)	110, 259, 815
BstX2I	RGATCY	3 cut(s)	172, 205, 611
BstXI	CCANNNNNNTGG	1 cut(s)	151
BstYI	RGATCY	3 cut(s)	172, 205, 611
BsuRI	GGCC	4 cut(s)	114, 165, 381, 644
BtsCI	GGATG	3 cut(s)	334, 574, 715
BtsIMutI	CAGTG	3 cut(s)	531, 570, 638
BveI	ACCTGC	1 cut(s)	707
Cac8I	GCNNGC	3 cut(s)	69, 112, 199
CaiI	CAGNNNCTG	1 cut(s)	743
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	2 cut(s)	643, 701
Csp6I	GTAC	3 cut(s)	57, 157, 347
CviAII	CATG	7 cut(s)	149, 198, 309, 350, 660, 685, 784
CviQI	GTAC	3 cut(s)	57, 157, 347
DdeI	CTNAG	3 cut(s)	72, 501, 534
DpnI	GATC	6 cut(s)	174, 207, 321, 613, 675, 762
DpnII	GATC	6 cut(s)	172, 205, 319, 611, 673, 760
EaeI	YGGCCR	1 cut(s)	112
Eam1104I	CTCTTC	2 cut(s)	255, 790
EarI	CTCTTC	2 cut(s)	255, 790
EciI	GGCGGA	1 cut(s)	76
Ecl136II	GAGCTC	1 cut(s)	439
Eco130I	CCWWGG	1 cut(s)	704
Eco24I	GRGCYC	1 cut(s)	441
Eco31I	GGTCTC	1 cut(s)	134
Eco47I	GGWCC	1 cut(s)	701
Eco53kI	GAGCTC	1 cut(s)	439
EcoICRI	GAGCTC	1 cut(s)	439
EcoO109I	RGGNCCY	1 cut(s)	701
EcoRII	CCWGG	1 cut(s)	165
EcoT14I	CCWWGG	1 cut(s)	704
EcoT38I	GRGCYC	1 cut(s)	441
ErhI	CCWWGG	1 cut(s)	704
FaeI	CATG	7 cut(s)	152, 201, 312, 353, 663, 688, 787
FaqI	GGGAC	1 cut(s)	595
FatI	CATG	7 cut(s)	148, 197, 308, 349, 659, 684, 783
FblI	GTMKAC	1 cut(s)	51
Fnu4HI	GCNGC	3 cut(s)	99, 273, 804
FokI	GGATG	3 cut(s)	341, 581, 722
FriOI	GRGCYC	1 cut(s)	441
Fsp4HI	GCNGC	3 cut(s)	99, 273, 804
FspBI	CTAG	1 cut(s)	314
GluI	GCNGC	3 cut(s)	99, 273, 804
GsuI	CTGGAG	1 cut(s)	765
HaeIII	GGCC	4 cut(s)	114, 165, 381, 644
HapII	CCGG	1 cut(s)	111
Hin1II	CATG	7 cut(s)	152, 201, 312, 353, 663, 688, 787
HincII	GTYRAC	1 cut(s)	52
HindII	GTYRAC	1 cut(s)	52
HinfI	GANTC	4 cut(s)	121, 354, 397, 851
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	2 cut(s)	619, 782
Hpy166II	GTNNAC	3 cut(s)	52, 418, 638
Hpy188I	TCNGA	3 cut(s)	34, 504, 856
Hpy188III	TCNNGA	1 cut(s)	792
Hpy8I	GTNNAC	3 cut(s)	52, 418, 638
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	1 cut(s)	7
HpyCH4III	ACNGT	3 cut(s)	56, 406, 565
HpyCH4IV	ACGT	4 cut(s)	9, 454, 550, 558
HpyCH4V	TGCA	6 cut(s)	98, 467, 572, 638, 688, 716
HpyF10VI	GCNNNNNNNGC	4 cut(s)	95, 107, 627, 722
HpyF3I	CTNAG	3 cut(s)	72, 501, 534
HpySE526I	ACGT	4 cut(s)	9, 454, 550, 558
Hsp92II	CATG	7 cut(s)	152, 201, 312, 353, 663, 688, 787
KroI	GCCGGC	1 cut(s)	110
KroNI	GCCGGC	1 cut(s)	112
Kzo9I	GATC	6 cut(s)	172, 205, 319, 611, 673, 760
LmnI	GCTCC	4 cut(s)	22, 289, 635, 775
Lsp1109I	GCAGC	3 cut(s)	110, 259, 815
LweI	GCATC	3 cut(s)	85, 559, 815
MaeI	CTAG	1 cut(s)	314
MaeII	ACGT	4 cut(s)	9, 454, 550, 558
MaeIII	GTNAC	5 cut(s)	178, 283, 529, 559, 733
MalI	GATC	6 cut(s)	174, 207, 321, 613, 675, 762
MboI	GATC	6 cut(s)	172, 205, 319, 611, 673, 760
MboII	GAAGA	3 cut(s)	215, 272, 807
MfeI	CAATTG	1 cut(s)	387
MflI	RGATCY	3 cut(s)	172, 205, 611
MhlI	GDGCHC	2 cut(s)	441, 640
MluCI	AATT	4 cut(s)	387, 429, 585, 729
MmeI	TCCRAC	2 cut(s)	44, 520
MroNI	GCCGGC	1 cut(s)	110
MseI	TTAA	4 cut(s)	216, 339, 588, 822
MslI	CAYNNNNRTG	1 cut(s)	693
MspCI	CTTAAG	1 cut(s)	821
MspI	CCGG	1 cut(s)	111
MspR9I	CCNGG	1 cut(s)	167
MunI	CAATTG	1 cut(s)	387
MvaI	CCWGG	1 cut(s)	167
MwoI	GCNNNNNNNGC	4 cut(s)	95, 107, 627, 722
NaeI	GCCGGC	1 cut(s)	112
NdeII	GATC	6 cut(s)	172, 205, 319, 611, 673, 760
NgoMIV	GCCGGC	1 cut(s)	110
NlaIII	CATG	7 cut(s)	152, 201, 312, 353, 663, 688, 787
NlaIV	GGNNCC	4 cut(s)	18, 334, 631, 702
NmuCI	GTSAC	2 cut(s)	178, 529
NspI	RCATGY	4 cut(s)	152, 201, 663, 688
NspV	TTCGAA	1 cut(s)	124
PaeI	GCATGC	1 cut(s)	201
PaqCI	CACCTGC	1 cut(s)	707
PdiI	GCCGGC	1 cut(s)	112
PfeI	GAWTC	4 cut(s)	121, 354, 397, 851
PkrI	GCNGC	3 cut(s)	100, 274, 805
Ppu21I	YACGTR	2 cut(s)	10, 455
PpuMI	RGGWCCY	1 cut(s)	701
PshBI	ATTAAT	1 cut(s)	588
Psp124BI	GAGCTC	1 cut(s)	441
Psp5II	RGGWCCY	1 cut(s)	701
Psp6I	CCWGG	1 cut(s)	165
PspGI	CCWGG	1 cut(s)	165
PspN4I	GGNNCC	4 cut(s)	18, 334, 631, 702
PspPI	GGNCC	2 cut(s)	643, 701
PspPPI	RGGWCCY	1 cut(s)	701
PstNI	CAGNNNCTG	1 cut(s)	743
PsuI	RGATCY	3 cut(s)	172, 205, 611
RsaI	GTAC	3 cut(s)	58, 158, 348
RsaNI	GTAC	3 cut(s)	57, 157, 347
RseI	CAYNNNNRTG	1 cut(s)	693
SacI	GAGCTC	1 cut(s)	441
SalI	GTCGAC	1 cut(s)	50
SaqAI	TTAA	4 cut(s)	216, 339, 588, 822
SatI	GCNGC	3 cut(s)	99, 273, 804
Sau3AI	GATC	6 cut(s)	172, 205, 319, 611, 673, 760
Sau96I	GGNCC	2 cut(s)	643, 701
ScaI	AGTACT	1 cut(s)	58
ScrFI	CCNGG	1 cut(s)	167
SduI	GDGCHC	2 cut(s)	441, 640
SfaNI	GCATC	3 cut(s)	85, 559, 815
SfuI	TTCGAA	1 cut(s)	124
SinI	GGWCC	1 cut(s)	701
SmiMI	CAYNNNNRTG	1 cut(s)	693
SmlI	CTYRAG	2 cut(s)	224, 821
SmoI	CTYRAG	2 cut(s)	224, 821
SphI	GCATGC	1 cut(s)	201
Sse9I	AATT	4 cut(s)	387, 429, 585, 729
SsiI	CCGC	1 cut(s)	87
SspMI	CTAG	1 cut(s)	314
SstI	GAGCTC	1 cut(s)	441
StyD4I	CCNGG	1 cut(s)	165
StyI	CCWWGG	1 cut(s)	704
TaaI	ACNGT	3 cut(s)	56, 406, 565
TaiI	ACGT	4 cut(s)	12, 457, 553, 561
TaqI	TCGA	3 cut(s)	51, 124, 793
TaqII	GACCGA	1 cut(s)	521
TasI	AATT	4 cut(s)	387, 429, 585, 729
TatI	WGTACW	3 cut(s)	56, 156, 346
TfiI	GAWTC	4 cut(s)	121, 354, 397, 851
Tru1I	TTAA	4 cut(s)	216, 339, 588, 822
Tru9I	TTAA	4 cut(s)	216, 339, 588, 822
TscAI	CASTG	3 cut(s)	538, 570, 645
TseFI	GTSAC	2 cut(s)	178, 529
TseI	GCWGC	3 cut(s)	98, 272, 803
Tsp45I	GTSAC	2 cut(s)	178, 529
TspDTI	ATGAA	1 cut(s)	241
TspGWI	ACGGA	2 cut(s)	197, 302
TspRI	CASTG	3 cut(s)	538, 570, 645
Vha464I	CTTAAG	1 cut(s)	821
VneI	GTGCAC	1 cut(s)	636
VpaK11BI	GGWCC	1 cut(s)	701
VspI	ATTAAT	1 cut(s)	588
XceI	RCATGY	4 cut(s)	152, 201, 663, 688
XmiI	GTMKAC	1 cut(s)	51
XspI	CTAG	1 cut(s)	314
ZrmI	AGTACT	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.