Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0009390

Physical Location & Seq

Genomic Coordinates Reverse (-)

572700 .. 575772

Gene Structure 3073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG009200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGCTGAAAATGATTCGCTTGCTCAGTTCTTGGCGTCTGCAGTTGATGCGGCCAAGAAAGCTGGACAGCTAATTCGAAAAGGGTTCTACGAGATCAAACATGTGGAGCATAAAGGCCAGGTGGATTTGGTCACAGAAACTGATAAGGCGGCTGAAGATCTCATATTTAATCATCTCAAGCAGCTTTATCCCACACATAAGTTCATTGGGGAAGAAACTACTGCTGCTTGTGGTGTAACGGAGCTGACTGATGACCCAACATGGATAGTGGATCCCCTGGATGGCACCACTAACTTTGTCCATGGGTTCCCCTTTGTCTGTGTCTCTATTGGTCTTACTATTGGAAAGATTCCCACAGTTGGTGTTGTTTATAATCCAATAATTGATGAGCTTTTTACTGGTATCCGTGGAGGAGGTGCATTTCTCAATGAAAATCCTATAAAAGTGTCATCTCAAAGTGAACTTGTGAAGTCTCTCCTTGCAACTGAGGCTGGAACAAAACGTGATAAATTAACTGTGGATGCTACTACAGGGAAACTAAATAGCTTACTTTTCGAGGTGAGATCGCTTCGGATGAGTGGCTCCTGTGCACTGAACCTCTGTGGAATTGCATGTGGGAGGCTTGATCTTTTTTATGAACTCGGCTTTGGGGGTCCTTGGGATGTGGCAGGTGGTGCTGTGATTGTTACAGAAGCTGGAGGATCTGTGTATGACCCATCTGGTAAGGACTTTGACATCACATCGCAAAGAGTAGCAGCATCGAATCCTCTGCTCAAGGATGCCTTTGTTAAGGCTTTGCAGAAATCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0005996 GO:0006020 GO:0006021 GO:0006066 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008934 GO:0009056 GO:0009058 GO:0009108 GO:0009110 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0010347 GO:0016020 GO:0016051 GO:0016053 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0019637 GO:0019751 GO:0019752 GO:0019852 GO:0019853 GO:0023052 GO:0034637 GO:0042364 GO:0042578 GO:0043167 GO:0043169 GO:0043436 GO:0043647 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046164 GO:0046165 GO:0046173 GO:0046174 GO:0046364 GO:0046394 GO:0046434 GO:0046838 GO:0046855 GO:0046872 GO:0050308 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051716 GO:0052745 GO:0052834 GO:0065007 GO:0070456 GO:0071545 GO:0071704 GO:0071944 GO:0080167 GO:1901575 GO:1901576 GO:1901615 GO:1901616 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00053 ko00562 ko01100 ko01110 ko04070 map00053 map00562 map01100 map01110 map04070

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

270

Amino Acids

28.87

Weight (kDa)

5.11

Isoelectric Point (pI)

26.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inositol_P	PF00459	8 - 268	3.5e-81	Inositol monophosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02870 AT3G02870 AT3G02870
fragaria_vesca	FvH4_3g00781
malus_domestica	MD05G1359400.v1.1 MD10G1334900.v1.1
prunus_persica	Prupe.4G008700_v2.0.a1
pyrus_communis	pycom05g32460 pycom10g28470
rosa_chinensis	RchiOBHm_Chr5g0001031 RchiOBHm_Chr6g0245961
rosa_laevigata	RLG00000030915
rosa_multiflora	Rmu_sc0000255.1_g000031 Rmu_sc0002281.1_g000006 Rmu_sc0004189.1_g000002
rosa_rugosa	Rorug04G0389100
rosa_samantha	Rh5AG008300 Rh5BG010400 Rh5CG009000 Rh5DG009200
rosa_wichuraiana	Rw5G000850 Rw6G002740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	372
AarI	CACCTGC	1 cut(s)	659
Acc36I	ACCTGC	1 cut(s)	659
AccB1I	GGYRCC	1 cut(s)	284
AciI	CCGC	2 cut(s)	50, 149
AclWI	GGATC	3 cut(s)	266, 279, 709
AcoI	YGGCCR	1 cut(s)	51
AcuI	CTGAAG	1 cut(s)	174
AcyI	GRCGYC	1 cut(s)	35
AfiI	CCNNNNNNNGG	2 cut(s)	281, 359
AflIII	ACRYGT	1 cut(s)	100
AjnI	CCWGG	2 cut(s)	117, 276
AjuI	GAANNNNNNNTTGG	2 cut(s)	630, 662
AluBI	AGCT	7 cut(s)	62, 70, 184, 244, 391, 546, 695
AluI	AGCT	7 cut(s)	62, 70, 184, 244, 391, 546, 695
Alw21I	GWGCWC	1 cut(s)	592
Alw26I	GTCTC	2 cut(s)	328, 477
Alw44I	GTGCAC	1 cut(s)	588
AlwI	GGATC	3 cut(s)	266, 279, 709
AlwNI	CAGNNNCTG	2 cut(s)	140, 695
AoxI	GGCC	2 cut(s)	51, 115
ApaLI	GTGCAC	1 cut(s)	588
ApeKI	GCWGC	3 cut(s)	181, 224, 755
ArsI	GACNNNNNNTTYG	2 cut(s)	57, 89
AspS9I	GGNCC	1 cut(s)	653
AsuHPI	GGTGA	1 cut(s)	571
AsuII	TTCGAA	1 cut(s)	76
AvaII	GGWCC	1 cut(s)	653
BaeGI	GKGCMC	1 cut(s)	592
BamHI	GGATCC	1 cut(s)	271
BanI	GGYRCC	1 cut(s)	284
Bbv12I	GWGCWC	1 cut(s)	592
BbvI	GCAGC	3 cut(s)	193, 211, 767
BccI	CCATC	2 cut(s)	275, 724
BcgI	CGANNNNNNTGC	2 cut(s)	751, 785
BciT130I	CCWGG	2 cut(s)	119, 278
BciVI	GTATCC	1 cut(s)	413
BcoDI	GTCTC	2 cut(s)	328, 477
BfmI	CTRYAG	2 cut(s)	39, 528
BfuAI	ACCTGC	1 cut(s)	659
BfuI	GTATCC	1 cut(s)	413
BglII	AGATCT	1 cut(s)	157
BisI	GCNGC	5 cut(s)	51, 150, 182, 225, 756
BlsI	GCNGC	5 cut(s)	52, 151, 183, 226, 757
Bme1390I	CCNGG	2 cut(s)	119, 278
Bme18I	GGWCC	1 cut(s)	653
BmgT120I	GGNCC	1 cut(s)	653
BmiI	GGNNCC	5 cut(s)	273, 286, 308, 583, 654
BmrFI	CCNGG	2 cut(s)	119, 278
BmsI	GCATC	4 cut(s)	37, 511, 767, 769
BpmI	CTGGAG	1 cut(s)	717
Bpu14I	TTCGAA	1 cut(s)	76
BpuEI	CTTGAG	2 cut(s)	161, 758
BsaHI	GRCGYC	1 cut(s)	35
BsaJI	CCNNGG	4 cut(s)	276, 301, 406, 656
BsaXI	ACNNNNNCTCC	2 cut(s)	690, 720
Bsc4I	CCNNNNNNNGG	2 cut(s)	281, 359
Bse1I	ACTGG	1 cut(s)	403
BseBI	CCWGG	2 cut(s)	119, 278
BseDI	CCNNGG	4 cut(s)	276, 301, 406, 656
BseGI	GGATG	5 cut(s)	286, 526, 579, 667, 784
BseLI	CCNNNNNNNGG	2 cut(s)	281, 359
BseMII	CTCAG	2 cut(s)	38, 477
BseNI	ACTGG	1 cut(s)	403
BseRI	GAGGAG	1 cut(s)	426
BseSI	GKGCMC	1 cut(s)	592
BseXI	GCAGC	3 cut(s)	193, 211, 767
BshFI	GGCC	2 cut(s)	53, 117
BshNI	GGYRCC	1 cut(s)	284
BsiHKAI	GWGCWC	1 cut(s)	592
BslI	CCNNNNNNNGG	2 cut(s)	281, 359
BsmAI	GTCTC	2 cut(s)	328, 477
BsnI	GGCC	2 cut(s)	53, 117
Bsp119I	TTCGAA	1 cut(s)	76
Bsp1286I	GDGCHC	1 cut(s)	592
Bsp143I	GATC	6 cut(s)	93, 157, 271, 563, 625, 701
Bsp19I	CCATGG	1 cut(s)	301
BspACI	CCGC	2 cut(s)	50, 149
BspANI	GGCC	2 cut(s)	53, 117
BspCNI	CTCAG	2 cut(s)	37, 478
BspLI	GGNNCC	5 cut(s)	273, 286, 308, 583, 654
BspMAI	CTGCAG	1 cut(s)	43
BspMI	ACCTGC	1 cut(s)	659
BspPI	GGATC	3 cut(s)	266, 279, 709
BspT104I	TTCGAA	1 cut(s)	76
BspT107I	GGYRCC	1 cut(s)	284
BsrI	ACTGG	1 cut(s)	403
BssECI	CCNNGG	4 cut(s)	276, 301, 406, 656
BssMI	GATC	6 cut(s)	93, 157, 271, 563, 625, 701
BssNI	GRCGYC	1 cut(s)	35
BssT1I	CCWWGG	2 cut(s)	301, 656
Bst2UI	CCWGG	2 cut(s)	119, 278
Bst4CI	ACNGT	2 cut(s)	358, 517
BstACI	GRCGYC	1 cut(s)	35
BstAPI	GCANNNNNTGC	2 cut(s)	47, 674
BstBI	TTCGAA	1 cut(s)	76
BstC8I	GCNNGC	1 cut(s)	21
BstDEI	CTNAG	2 cut(s)	24, 486
BstDSI	CCRYGG	2 cut(s)	301, 406
BstF5I	GGATG	5 cut(s)	286, 526, 579, 667, 784
BstKTI	GATC	6 cut(s)	96, 160, 274, 566, 628, 704
BstMAI	GTCTC	2 cut(s)	328, 477
BstMBI	GATC	6 cut(s)	93, 157, 271, 563, 625, 701
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 59, 488, 674
BstNI	CCWGG	2 cut(s)	119, 278
BstNSI	RCATGY	2 cut(s)	104, 615
BstSCI	CCNGG	2 cut(s)	117, 276
BstSFI	CTRYAG	2 cut(s)	39, 528
BstSLI	GKGCMC	1 cut(s)	592
BstV1I	GCAGC	3 cut(s)	193, 211, 767
BstX2I	RGATCY	3 cut(s)	157, 271, 701
BstYI	RGATCY	3 cut(s)	157, 271, 701
BsuI	GTATCC	1 cut(s)	413
BsuRI	GGCC	2 cut(s)	53, 117
BtgI	CCRYGG	2 cut(s)	301, 406
BtgZI	GCGATG	1 cut(s)	726
BtsCI	GGATG	5 cut(s)	286, 526, 579, 667, 784
BtsIMutI	CAGTG	1 cut(s)	590
BveI	ACCTGC	1 cut(s)	659
Cac8I	GCNNGC	1 cut(s)	21
CaiI	CAGNNNCTG	2 cut(s)	140, 695
Cfr13I	GGNCC	1 cut(s)	653
CseI	GACGC	1 cut(s)	24
CspCI	CAANNNNNGTGG	2 cut(s)	277, 312
CviAII	CATG	4 cut(s)	101, 261, 302, 612
DdeI	CTNAG	2 cut(s)	24, 486
DpnI	GATC	6 cut(s)	95, 159, 273, 565, 627, 703
DpnII	GATC	6 cut(s)	93, 157, 271, 563, 625, 701
EaeI	YGGCCR	1 cut(s)	51
Eco130I	CCWWGG	2 cut(s)	301, 656
Eco47I	GGWCC	1 cut(s)	653
Eco57I	CTGAAG	1 cut(s)	174
EcoO109I	RGGNCCY	1 cut(s)	653
EcoRII	CCWGG	2 cut(s)	117, 276
EcoT14I	CCWWGG	2 cut(s)	301, 656
ErhI	CCWWGG	2 cut(s)	301, 656
FaeI	CATG	4 cut(s)	104, 264, 305, 615
FalI	AAGNNNNNCTT	2 cut(s)	767, 799
FatI	CATG	4 cut(s)	100, 260, 301, 611
Fnu4HI	GCNGC	5 cut(s)	51, 150, 182, 225, 756
FokI	GGATG	5 cut(s)	293, 533, 586, 674, 791
Fsp4HI	GCNGC	5 cut(s)	51, 150, 182, 225, 756
GluI	GCNGC	5 cut(s)	51, 150, 182, 225, 756
GsuI	CTGGAG	1 cut(s)	717
HaeIII	GGCC	2 cut(s)	53, 117
HgaI	GACGC	1 cut(s)	24
Hin1I	GRCGYC	1 cut(s)	35
Hin1II	CATG	4 cut(s)	104, 264, 305, 615
HinfI	GANTC	3 cut(s)	14, 349, 763
HphI	GGTGA	1 cut(s)	571
Hpy166II	GTNNAC	2 cut(s)	461, 590
Hpy188I	TCNGA	2 cut(s)	573, 808
Hpy8I	GTNNAC	2 cut(s)	461, 590
HpyCH4III	ACNGT	2 cut(s)	358, 517
HpyCH4IV	ACGT	1 cut(s)	502
HpyCH4V	TGCA	6 cut(s)	41, 419, 482, 590, 611, 799
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 59, 488, 674
HpyF3I	CTNAG	2 cut(s)	24, 486
HpySE526I	ACGT	1 cut(s)	502
Hsp92I	GRCGYC	1 cut(s)	35
Hsp92II	CATG	4 cut(s)	104, 264, 305, 615
Kzo9I	GATC	6 cut(s)	93, 157, 271, 563, 625, 701
LmnI	GCTCC	3 cut(s)	106, 241, 587
Lsp1109I	GCAGC	3 cut(s)	193, 211, 767
LweI	GCATC	4 cut(s)	37, 511, 767, 769
MaeII	ACGT	1 cut(s)	502
MaeIII	GTNAC	3 cut(s)	130, 235, 685
MalI	GATC	6 cut(s)	95, 159, 273, 565, 627, 703
MboI	GATC	6 cut(s)	93, 157, 271, 563, 625, 701
MboII	GAAGA	2 cut(s)	167, 224
MflI	RGATCY	3 cut(s)	157, 271, 701
MhlI	GDGCHC	1 cut(s)	592
MluCI	AATT	4 cut(s)	72, 381, 509, 606
MnlI	CCTC	8 cut(s)	404, 407, 481, 550, 608, 612, 692, 777
MseI	TTAA	3 cut(s)	168, 512, 789
MspR9I	CCNGG	2 cut(s)	119, 278
MvaI	CCWGG	2 cut(s)	119, 278
MwoI	GCNNNNNNNGC	4 cut(s)	47, 59, 488, 674
NcoI	CCATGG	1 cut(s)	301
NdeII	GATC	6 cut(s)	93, 157, 271, 563, 625, 701
NlaIII	CATG	4 cut(s)	104, 264, 305, 615
NlaIV	GGNNCC	5 cut(s)	273, 286, 308, 583, 654
NmeAIII	GCCGAG	1 cut(s)	621
NmuCI	GTSAC	1 cut(s)	130
NspI	RCATGY	2 cut(s)	104, 615
NspV	TTCGAA	1 cut(s)	76
PaqCI	CACCTGC	1 cut(s)	659
PciI	ACATGT	1 cut(s)	100
PfeI	GAWTC	3 cut(s)	14, 349, 763
PkrI	GCNGC	5 cut(s)	52, 151, 183, 226, 757
PpuMI	RGGWCCY	1 cut(s)	653
PscI	ACATGT	1 cut(s)	100
PsiI	TTATAA	1 cut(s)	372
Psp5II	RGGWCCY	1 cut(s)	653
Psp6I	CCWGG	2 cut(s)	117, 276
PspGI	CCWGG	2 cut(s)	117, 276
PspN4I	GGNNCC	5 cut(s)	273, 286, 308, 583, 654
PspPI	GGNCC	1 cut(s)	653
PspPPI	RGGWCCY	1 cut(s)	653
PstI	CTGCAG	1 cut(s)	43
PstNI	CAGNNNCTG	2 cut(s)	140, 695
PsuI	RGATCY	3 cut(s)	157, 271, 701
SaqAI	TTAA	3 cut(s)	168, 512, 789
SatI	GCNGC	5 cut(s)	51, 150, 182, 225, 756
Sau3AI	GATC	6 cut(s)	93, 157, 271, 563, 625, 701
Sau96I	GGNCC	1 cut(s)	653
ScrFI	CCNGG	2 cut(s)	119, 278
SduI	GDGCHC	1 cut(s)	592
SfaNI	GCATC	4 cut(s)	37, 511, 767, 769
SfcI	CTRYAG	2 cut(s)	39, 528
SfuI	TTCGAA	1 cut(s)	76
SinI	GGWCC	1 cut(s)	653
SmlI	CTYRAG	2 cut(s)	176, 773
SmoI	CTYRAG	2 cut(s)	176, 773
Sse9I	AATT	4 cut(s)	72, 381, 509, 606
SsiI	CCGC	2 cut(s)	50, 149
StyD4I	CCNGG	2 cut(s)	117, 276
StyI	CCWWGG	2 cut(s)	301, 656
TaaI	ACNGT	2 cut(s)	358, 517
TaiI	ACGT	1 cut(s)	505
TaqI	TCGA	3 cut(s)	76, 555, 761
TasI	AATT	4 cut(s)	72, 381, 509, 606
TauI	GCSGC	2 cut(s)	53, 152
TfiI	GAWTC	3 cut(s)	14, 349, 763
Tru1I	TTAA	3 cut(s)	168, 512, 789
Tru9I	TTAA	3 cut(s)	168, 512, 789
TscAI	CASTG	1 cut(s)	597
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	3 cut(s)	181, 224, 755
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	3 cut(s)	193, 444, 651
TspGWI	ACGGA	2 cut(s)	254, 395
TspRI	CASTG	1 cut(s)	597
VneI	GTGCAC	1 cut(s)	588
VpaK11BI	GGWCC	1 cut(s)	653
XceI	RCATGY	2 cut(s)	104, 615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.