Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009390

Physical Location & Seq

Genomic Coordinates Forward (+)

1690626 .. 1694801

Gene Structure 4176 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22046

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGAACTTCATTTGTATACAAATTGCAAACCCCCCTCTTCATCACTCATCAGCATCTACACTGAGTGGTGTATTCAAACCACGCATTCCCCTCTCTGTTTCTCTCATCTCACAAAAAACAATGGCTGAAAATGATTCGCTTGCTCAGTTCTTGGCGTCTGCAGTTGACGCGGCCAAGAAAGCTGGACAGCTAATTCGAAAAGGGTTCTACGAGATCAAACATGTGGAGCATAAAGGCCAGGTGGATTTGGTCACAGAAACTGATAAGGCGGCTGAAGATCTCATATTTAATCATCTCAAGCAGCTTTATCCCACACATAAGTTCATTGGGGAAGAAACTACTGCTGCTTGTGGTGTAACGGAGCTGACTGATGACCCAACATGGATAGTGGATCCCCTGGATGGCACCACTAACTTTGTCCATGGGTTCCCCTTTGTCTGTGTCTCTATTGGTCTTACTATTGGAAAGATTCCCACAGTTGGTGTTGTTTATAATCCAATAATGGATGAGCTTTTTACTGGTATCCGTGGAGGAGGTGCATTTCTCAATGAAAATCCTATAAAAGTGTCATCTCAAAGTGAACTTGTGAAGTCTCTCCTTGCAACTGGGGCTGGAACAAAACGTGATAAATTAACTGTGGATGCTACTACAGGGAAACTAAATAGCTTACTTTTCGAGGTGAGATCGCTTCGGATGAGTGGCTCCTGTGCACTGAACCTCTGTGGAATTGCATGTGGGAGGCTTGATCTTTTTTATGAACTCGGCTTTGGGGGTCCTTGGGATGTGGCAGGTGGTGCTGTGATTGTTACAGAAGCTGGAGGATCTGTTTATGACCCATCTGGTAAGGACTTTGACATCACATCGCAAAGAGTAGCAGCATCGAATCCTCTGCTCAAGGATGCCTTTGTTAAGGCTTTGCAGAAATCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0005996 GO:0006020 GO:0006021 GO:0006066 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008934 GO:0009056 GO:0009058 GO:0009108 GO:0009110 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0010347 GO:0016020 GO:0016051 GO:0016053 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0019637 GO:0019751 GO:0019752 GO:0019852 GO:0019853 GO:0023052 GO:0034637 GO:0042364 GO:0042578 GO:0043167 GO:0043169 GO:0043436 GO:0043647 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046164 GO:0046165 GO:0046173 GO:0046174 GO:0046364 GO:0046394 GO:0046434 GO:0046838 GO:0046855 GO:0046872 GO:0050308 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051716 GO:0052745 GO:0052834 GO:0065007 GO:0070456 GO:0071545 GO:0071704 GO:0071944 GO:0080167 GO:1901575 GO:1901576 GO:1901615 GO:1901616 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00053 ko00562 ko01100 ko01110 ko04070 map00053 map00562 map01100 map01110 map04070

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

310

Amino Acids

33.13

Weight (kDa)

5.83

Isoelectric Point (pI)

23.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inositol_P	PF00459	48 - 308	7.3e-81	Inositol monophosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02870 AT3G02870 AT3G02870
fragaria_vesca	FvH4_3g00781
malus_domestica	MD05G1359400.v1.1 MD10G1334900.v1.1
prunus_persica	Prupe.4G008700_v2.0.a1
pyrus_communis	pycom05g32460 pycom10g28470
rosa_chinensis	RchiOBHm_Chr5g0001031 RchiOBHm_Chr6g0245961
rosa_laevigata	RLG00000030915
rosa_multiflora	Rmu_sc0000255.1_g000031 Rmu_sc0002281.1_g000006 Rmu_sc0004189.1_g000002
rosa_rugosa	Rorug04G0389100
rosa_samantha	Rh5AG008300 Rh5BG010400 Rh5CG009000 Rh5DG009200
rosa_wichuraiana	Rw5G000850 Rw6G002740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	492
AarI	CACCTGC	1 cut(s)	779
Acc36I	ACCTGC	1 cut(s)	779
AccB1I	GGYRCC	1 cut(s)	404
AccI	GTMKAC	1 cut(s)	16
AccII	CGCG	1 cut(s)	170
AciI	CCGC	2 cut(s)	170, 269
AclWI	GGATC	3 cut(s)	386, 399, 829
AcoI	YGGCCR	1 cut(s)	171
AcuI	CTGAAG	1 cut(s)	294
AcyI	GRCGYC	1 cut(s)	155
AdeI	CACNNNGTG	1 cut(s)	65
AfiI	CCNNNNNNNGG	2 cut(s)	401, 479
AflIII	ACRYGT	1 cut(s)	220
AgsI	TTSAA	1 cut(s)	76
AjnI	CCWGG	2 cut(s)	237, 396
AjuI	GAANNNNNNNTTGG	2 cut(s)	750, 782
AluBI	AGCT	7 cut(s)	182, 190, 304, 364, 511, 666, 815
AluI	AGCT	7 cut(s)	182, 190, 304, 364, 511, 666, 815
Alw21I	GWGCWC	1 cut(s)	712
Alw26I	GTCTC	2 cut(s)	448, 597
Alw44I	GTGCAC	1 cut(s)	708
AlwI	GGATC	3 cut(s)	386, 399, 829
AlwNI	CAGNNNCTG	2 cut(s)	260, 815
AoxI	GGCC	2 cut(s)	171, 235
ApaLI	GTGCAC	1 cut(s)	708
ApeKI	GCWGC	3 cut(s)	301, 344, 875
ArsI	GACNNNNNNTTYG	2 cut(s)	177, 209
AspS9I	GGNCC	1 cut(s)	773
AsuHPI	GGTGA	1 cut(s)	691
AsuII	TTCGAA	1 cut(s)	196
AvaII	GGWCC	1 cut(s)	773
BaeGI	GKGCMC	1 cut(s)	712
BamHI	GGATCC	1 cut(s)	391
BanI	GGYRCC	1 cut(s)	404
Bbv12I	GWGCWC	1 cut(s)	712
BbvI	GCAGC	3 cut(s)	313, 331, 887
BccI	CCATC	2 cut(s)	395, 844
BcgI	CGANNNNNNTGC	2 cut(s)	871, 905
BciT130I	CCWGG	2 cut(s)	239, 398
BciVI	GTATCC	1 cut(s)	533
BcoDI	GTCTC	2 cut(s)	448, 597
BfmI	CTRYAG	2 cut(s)	159, 648
BfuAI	ACCTGC	1 cut(s)	779
BfuI	GTATCC	1 cut(s)	533
BglII	AGATCT	1 cut(s)	277
BisI	GCNGC	5 cut(s)	171, 270, 302, 345, 876
BlsI	GCNGC	5 cut(s)	172, 271, 303, 346, 877
Bme1390I	CCNGG	2 cut(s)	239, 398
Bme18I	GGWCC	1 cut(s)	773
BmgT120I	GGNCC	1 cut(s)	773
BmiI	GGNNCC	5 cut(s)	393, 406, 428, 703, 774
BmrFI	CCNGG	2 cut(s)	239, 398
BmrI	ACTGGG	1 cut(s)	615
BmsI	GCATC	4 cut(s)	62, 631, 887, 889
BmuI	ACTGGG	1 cut(s)	615
BpmI	CTGGAG	1 cut(s)	837
Bpu14I	TTCGAA	1 cut(s)	196
BpuEI	CTTGAG	2 cut(s)	281, 878
BsaHI	GRCGYC	1 cut(s)	155
BsaJI	CCNNGG	4 cut(s)	396, 421, 526, 776
BsaXI	ACNNNNNCTCC	2 cut(s)	810, 840
Bsc4I	CCNNNNNNNGG	2 cut(s)	401, 479
Bse1I	ACTGG	2 cut(s)	523, 610
BseBI	CCWGG	2 cut(s)	239, 398
BseDI	CCNNGG	4 cut(s)	396, 421, 526, 776
BseGI	GGATG	6 cut(s)	406, 511, 646, 699, 787, 904
BseLI	CCNNNNNNNGG	2 cut(s)	401, 479
BseMII	CTCAG	2 cut(s)	53, 158
BseNI	ACTGG	2 cut(s)	523, 610
BseRI	GAGGAG	1 cut(s)	546
BseSI	GKGCMC	1 cut(s)	712
BseXI	GCAGC	3 cut(s)	313, 331, 887
Bsh1236I	CGCG	1 cut(s)	170
BshFI	GGCC	2 cut(s)	173, 237
BshNI	GGYRCC	1 cut(s)	404
BsiHKAI	GWGCWC	1 cut(s)	712
BslI	CCNNNNNNNGG	2 cut(s)	401, 479
BsmAI	GTCTC	2 cut(s)	448, 597
BsmI	GAATGC	1 cut(s)	84
BsnI	GGCC	2 cut(s)	173, 237
Bsp119I	TTCGAA	1 cut(s)	196
Bsp1286I	GDGCHC	1 cut(s)	712
Bsp143I	GATC	6 cut(s)	213, 277, 391, 683, 745, 821
Bsp19I	CCATGG	1 cut(s)	421
BspACI	CCGC	2 cut(s)	170, 269
BspANI	GGCC	2 cut(s)	173, 237
BspCNI	CTCAG	2 cut(s)	54, 157
BspFNI	CGCG	1 cut(s)	170
BspLI	GGNNCC	5 cut(s)	393, 406, 428, 703, 774
BspMAI	CTGCAG	1 cut(s)	163
BspMI	ACCTGC	1 cut(s)	779
BspPI	GGATC	3 cut(s)	386, 399, 829
BspT104I	TTCGAA	1 cut(s)	196
BspT107I	GGYRCC	1 cut(s)	404
BsrI	ACTGG	2 cut(s)	523, 610
BssECI	CCNNGG	4 cut(s)	396, 421, 526, 776
BssMI	GATC	6 cut(s)	213, 277, 391, 683, 745, 821
BssNAI	GTATAC	1 cut(s)	17
BssNI	GRCGYC	1 cut(s)	155
BssT1I	CCWWGG	2 cut(s)	421, 776
Bst1107I	GTATAC	1 cut(s)	17
Bst2UI	CCWGG	2 cut(s)	239, 398
Bst4CI	ACNGT	2 cut(s)	478, 637
Bst6I	CTCTTC	1 cut(s)	42
BstACI	GRCGYC	1 cut(s)	155
BstAPI	GCANNNNNTGC	1 cut(s)	794
BstBI	TTCGAA	1 cut(s)	196
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	2 cut(s)	62, 144
BstDSI	CCRYGG	2 cut(s)	421, 526
BstF5I	GGATG	6 cut(s)	406, 511, 646, 699, 787, 904
BstFNI	CGCG	1 cut(s)	170
BstKTI	GATC	6 cut(s)	216, 280, 394, 686, 748, 824
BstMAI	GTCTC	2 cut(s)	448, 597
BstMBI	GATC	6 cut(s)	213, 277, 391, 683, 745, 821
BstMWI	GCNNNNNNNGC	4 cut(s)	167, 179, 608, 794
BstNI	CCWGG	2 cut(s)	239, 398
BstNSI	RCATGY	2 cut(s)	224, 735
BstSCI	CCNGG	2 cut(s)	237, 396
BstSFI	CTRYAG	2 cut(s)	159, 648
BstSLI	GKGCMC	1 cut(s)	712
BstUI	CGCG	1 cut(s)	170
BstV1I	GCAGC	3 cut(s)	313, 331, 887
BstX2I	RGATCY	3 cut(s)	277, 391, 821
BstYI	RGATCY	3 cut(s)	277, 391, 821
BstZ17I	GTATAC	1 cut(s)	17
BsuI	GTATCC	1 cut(s)	533
BsuRI	GGCC	2 cut(s)	173, 237
BtgI	CCRYGG	2 cut(s)	421, 526
BtgZI	GCGATG	1 cut(s)	846
BtsCI	GGATG	6 cut(s)	406, 511, 646, 699, 787, 904
BtsIMutI	CAGTG	2 cut(s)	59, 710
BveI	ACCTGC	1 cut(s)	779
Cac8I	GCNNGC	1 cut(s)	141
CaiI	CAGNNNCTG	2 cut(s)	260, 815
Cfr13I	GGNCC	1 cut(s)	773
CseI	GACGC	2 cut(s)	144, 176
CspCI	CAANNNNNGTGG	2 cut(s)	397, 432
CviAII	CATG	4 cut(s)	221, 381, 422, 732
DdeI	CTNAG	2 cut(s)	62, 144
DpnI	GATC	6 cut(s)	215, 279, 393, 685, 747, 823
DpnII	GATC	6 cut(s)	213, 277, 391, 683, 745, 821
DraIII	CACNNNGTG	1 cut(s)	65
EaeI	YGGCCR	1 cut(s)	171
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
Eco130I	CCWWGG	2 cut(s)	421, 776
Eco47I	GGWCC	1 cut(s)	773
Eco57I	CTGAAG	1 cut(s)	294
EcoO109I	RGGNCCY	1 cut(s)	773
EcoRII	CCWGG	2 cut(s)	237, 396
EcoT14I	CCWWGG	2 cut(s)	421, 776
ErhI	CCWWGG	2 cut(s)	421, 776
FaeI	CATG	4 cut(s)	224, 384, 425, 735
FalI	AAGNNNNNCTT	2 cut(s)	887, 919
FatI	CATG	4 cut(s)	220, 380, 421, 731
FblI	GTMKAC	1 cut(s)	16
Fnu4HI	GCNGC	5 cut(s)	171, 270, 302, 345, 876
FokI	GGATG	6 cut(s)	413, 518, 653, 706, 794, 911
Fsp4HI	GCNGC	5 cut(s)	171, 270, 302, 345, 876
GluI	GCNGC	5 cut(s)	171, 270, 302, 345, 876
GsuI	CTGGAG	1 cut(s)	837
HaeIII	GGCC	2 cut(s)	173, 237
HgaI	GACGC	2 cut(s)	144, 176
Hin1I	GRCGYC	1 cut(s)	155
Hin1II	CATG	4 cut(s)	224, 384, 425, 735
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HinfI	GANTC	3 cut(s)	134, 469, 883
HphI	GGTGA	1 cut(s)	691
Hpy166II	GTNNAC	4 cut(s)	17, 166, 581, 710
Hpy188I	TCNGA	2 cut(s)	693, 928
Hpy8I	GTNNAC	4 cut(s)	17, 166, 581, 710
HpyCH4III	ACNGT	2 cut(s)	478, 637
HpyCH4IV	ACGT	1 cut(s)	622
HpyCH4V	TGCA	7 cut(s)	26, 161, 539, 602, 710, 731, 919
HpyF10VI	GCNNNNNNNGC	4 cut(s)	167, 179, 608, 794
HpyF3I	CTNAG	2 cut(s)	62, 144
HpySE526I	ACGT	1 cut(s)	622
Hsp92I	GRCGYC	1 cut(s)	155
Hsp92II	CATG	4 cut(s)	224, 384, 425, 735
Kzo9I	GATC	6 cut(s)	213, 277, 391, 683, 745, 821
LmnI	GCTCC	3 cut(s)	226, 361, 707
Lsp1109I	GCAGC	3 cut(s)	313, 331, 887
LweI	GCATC	4 cut(s)	62, 631, 887, 889
MaeII	ACGT	1 cut(s)	622
MaeIII	GTNAC	3 cut(s)	250, 355, 805
MalI	GATC	6 cut(s)	215, 279, 393, 685, 747, 823
MboI	GATC	6 cut(s)	213, 277, 391, 683, 745, 821
MboII	GAAGA	3 cut(s)	29, 287, 344
MflI	RGATCY	3 cut(s)	277, 391, 821
MhlI	GDGCHC	1 cut(s)	712
MluCI	AATT	4 cut(s)	21, 192, 629, 726
MnlI	CCTC	9 cut(s)	45, 101, 524, 527, 670, 728, 732, 812, 897
MseI	TTAA	3 cut(s)	288, 632, 909
MspR9I	CCNGG	2 cut(s)	239, 398
Mva1269I	GAATGC	1 cut(s)	84
MvaI	CCWGG	2 cut(s)	239, 398
MvnI	CGCG	1 cut(s)	170
MwoI	GCNNNNNNNGC	4 cut(s)	167, 179, 608, 794
NcoI	CCATGG	1 cut(s)	421
NdeII	GATC	6 cut(s)	213, 277, 391, 683, 745, 821
NlaIII	CATG	4 cut(s)	224, 384, 425, 735
NlaIV	GGNNCC	5 cut(s)	393, 406, 428, 703, 774
NmeAIII	GCCGAG	1 cut(s)	741
NmuCI	GTSAC	1 cut(s)	250
NspI	RCATGY	2 cut(s)	224, 735
NspV	TTCGAA	1 cut(s)	196
PaqCI	CACCTGC	1 cut(s)	779
PciI	ACATGT	1 cut(s)	220
PctI	GAATGC	1 cut(s)	84
PfeI	GAWTC	3 cut(s)	134, 469, 883
PkrI	GCNGC	5 cut(s)	172, 271, 303, 346, 877
PpuMI	RGGWCCY	1 cut(s)	773
PscI	ACATGT	1 cut(s)	220
PsiI	TTATAA	1 cut(s)	492
Psp5II	RGGWCCY	1 cut(s)	773
Psp6I	CCWGG	2 cut(s)	237, 396
PspGI	CCWGG	2 cut(s)	237, 396
PspN4I	GGNNCC	5 cut(s)	393, 406, 428, 703, 774
PspPI	GGNCC	1 cut(s)	773
PspPPI	RGGWCCY	1 cut(s)	773
PstI	CTGCAG	1 cut(s)	163
PstNI	CAGNNNCTG	2 cut(s)	260, 815
PsuI	RGATCY	3 cut(s)	277, 391, 821
SaqAI	TTAA	3 cut(s)	288, 632, 909
SatI	GCNGC	5 cut(s)	171, 270, 302, 345, 876
Sau3AI	GATC	6 cut(s)	213, 277, 391, 683, 745, 821
Sau96I	GGNCC	1 cut(s)	773
ScrFI	CCNGG	2 cut(s)	239, 398
SduI	GDGCHC	1 cut(s)	712
SfaNI	GCATC	4 cut(s)	62, 631, 887, 889
SfcI	CTRYAG	2 cut(s)	159, 648
SfuI	TTCGAA	1 cut(s)	196
SinI	GGWCC	1 cut(s)	773
SmlI	CTYRAG	2 cut(s)	296, 893
SmoI	CTYRAG	2 cut(s)	296, 893
Sse9I	AATT	4 cut(s)	21, 192, 629, 726
SsiI	CCGC	2 cut(s)	170, 269
StyD4I	CCNGG	2 cut(s)	237, 396
StyI	CCWWGG	2 cut(s)	421, 776
TaaI	ACNGT	2 cut(s)	478, 637
TaiI	ACGT	1 cut(s)	625
TaqI	TCGA	3 cut(s)	196, 675, 881
TasI	AATT	4 cut(s)	21, 192, 629, 726
TauI	GCSGC	2 cut(s)	173, 272
TfiI	GAWTC	3 cut(s)	134, 469, 883
Tru1I	TTAA	3 cut(s)	288, 632, 909
Tru9I	TTAA	3 cut(s)	288, 632, 909
TscAI	CASTG	2 cut(s)	66, 717
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	3 cut(s)	301, 344, 875
Tsp45I	GTSAC	1 cut(s)	250
TspDTI	ATGAA	5 cut(s)	17, 29, 313, 564, 771
TspGWI	ACGGA	2 cut(s)	374, 515
TspRI	CASTG	2 cut(s)	66, 717
VneI	GTGCAC	1 cut(s)	708
VpaK11BI	GGWCC	1 cut(s)	773
XceI	RCATGY	2 cut(s)	224, 735
XmiI	GTMKAC	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.