Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002281.1

Orthogroup ID

OG0009390

Physical Location & Seq

Genomic Coordinates Reverse (-)

38265 .. 39782

Gene Structure 1518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002281.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atggctgaaaatgattcgcttgctcagttcttggcgtctgcagttgacgcggccaagaaagctggacagctaattcgaaaagggttctacgagatcaaacatgtggagcataaaggccaggtggatttggtcacagaaactgataaggcggctgaagatctcatatttaatcatctcaagcagctttatcccacacataagttcattggggaagaaactactgctgcttgtggtgtaacggagctgactgatgacccaacatggatagtggatcccctggatggcaccactaactttgtccatgggttcccctttgtctgtgtctctattggtcttactattggaaagattcccacagttggtgttgtttataatccaataatggatgagctttttactggtatccgtggaggaggtgcatttctcaatgaaaatcctataaaagtgtcatctcaaagtgaacttgtgaattctctccttgcaactgaggtttgtgaatatttgttatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0005996 GO:0006020 GO:0006021 GO:0006066 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008934 GO:0009056 GO:0009058 GO:0009108 GO:0009110 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0010347 GO:0016020 GO:0016051 GO:0016053 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0019637 GO:0019751 GO:0019752 GO:0019852 GO:0019853 GO:0023052 GO:0034637 GO:0042364 GO:0042578 GO:0043167 GO:0043169 GO:0043436 GO:0043647 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046164 GO:0046165 GO:0046173 GO:0046174 GO:0046364 GO:0046394 GO:0046434 GO:0046838 GO:0046855 GO:0046872 GO:0050308 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051716 GO:0052745 GO:0052834 GO:0065007 GO:0070456 GO:0071545 GO:0071704 GO:0071944 GO:0080167 GO:1901575 GO:1901576 GO:1901615 GO:1901616 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00053 ko00562 ko01100 ko01110 ko04070 map00053 map00562 map01100 map01110 map04070

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

169

Amino Acids

18.38

Weight (kDa)

4.73

Isoelectric Point (pI)

20.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02870 AT3G02870 AT3G02870
fragaria_vesca	FvH4_3g00781
malus_domestica	MD05G1359400.v1.1 MD10G1334900.v1.1
prunus_persica	Prupe.4G008700_v2.0.a1
pyrus_communis	pycom05g32460 pycom10g28470
rosa_chinensis	RchiOBHm_Chr5g0001031 RchiOBHm_Chr6g0245961
rosa_laevigata	RLG00000030915
rosa_multiflora	Rmu_sc0000255.1_g000031 Rmu_sc0002281.1_g000006 Rmu_sc0004189.1_g000002
rosa_rugosa	Rorug04G0389100
rosa_samantha	Rh5AG008300 Rh5BG010400 Rh5CG009000 Rh5DG009200
rosa_wichuraiana	Rw5G000850 Rw6G002740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	372
AccB1I	GGYRCC	1 cut(s)	284
AccII	CGCG	1 cut(s)	50
AciI	CCGC	2 cut(s)	50, 149
AclWI	GGATC	2 cut(s)	266, 279
AcoI	YGGCCR	1 cut(s)	51
AcsI	RAATTY	1 cut(s)	469
AcuI	CTGAAG	1 cut(s)	174
AcyI	GRCGYC	1 cut(s)	35
AfiI	CCNNNNNNNGG	2 cut(s)	281, 359
AflIII	ACRYGT	1 cut(s)	100
AjnI	CCWGG	2 cut(s)	117, 276
AluBI	AGCT	5 cut(s)	62, 70, 184, 244, 391
AluI	AGCT	5 cut(s)	62, 70, 184, 244, 391
Alw26I	GTCTC	1 cut(s)	328
AlwI	GGATC	2 cut(s)	266, 279
AlwNI	CAGNNNCTG	1 cut(s)	140
AoxI	GGCC	2 cut(s)	51, 115
ApeKI	GCWGC	2 cut(s)	181, 224
ApoI	RAATTY	1 cut(s)	469
ArsI	GACNNNNNNTTYG	2 cut(s)	57, 89
AsuII	TTCGAA	1 cut(s)	76
BamHI	GGATCC	1 cut(s)	271
BanI	GGYRCC	1 cut(s)	284
BbvI	GCAGC	2 cut(s)	193, 211
BccI	CCATC	1 cut(s)	275
BciT130I	CCWGG	2 cut(s)	119, 278
BciVI	GTATCC	1 cut(s)	413
BcoDI	GTCTC	1 cut(s)	328
BfmI	CTRYAG	1 cut(s)	39
BfuI	GTATCC	1 cut(s)	413
BglII	AGATCT	1 cut(s)	157
BisI	GCNGC	4 cut(s)	51, 150, 182, 225
BlsI	GCNGC	4 cut(s)	52, 151, 183, 226
Bme1390I	CCNGG	2 cut(s)	119, 278
BmiI	GGNNCC	3 cut(s)	273, 286, 308
BmrFI	CCNGG	2 cut(s)	119, 278
Bpu14I	TTCGAA	1 cut(s)	76
BpuEI	CTTGAG	1 cut(s)	161
BsaHI	GRCGYC	1 cut(s)	35
BsaJI	CCNNGG	3 cut(s)	276, 301, 406
Bsc4I	CCNNNNNNNGG	2 cut(s)	281, 359
Bse1I	ACTGG	1 cut(s)	403
BseBI	CCWGG	2 cut(s)	119, 278
BseDI	CCNNGG	3 cut(s)	276, 301, 406
BseGI	GGATG	2 cut(s)	286, 391
BseLI	CCNNNNNNNGG	2 cut(s)	281, 359
BseMII	CTCAG	2 cut(s)	38, 477
BseNI	ACTGG	1 cut(s)	403
BseRI	GAGGAG	1 cut(s)	426
BseXI	GCAGC	2 cut(s)	193, 211
Bsh1236I	CGCG	1 cut(s)	50
BshFI	GGCC	2 cut(s)	53, 117
BshNI	GGYRCC	1 cut(s)	284
BslI	CCNNNNNNNGG	2 cut(s)	281, 359
BsmAI	GTCTC	1 cut(s)	328
BsnI	GGCC	2 cut(s)	53, 117
Bsp119I	TTCGAA	1 cut(s)	76
Bsp143I	GATC	3 cut(s)	93, 157, 271
Bsp19I	CCATGG	1 cut(s)	301
BspACI	CCGC	2 cut(s)	50, 149
BspANI	GGCC	2 cut(s)	53, 117
BspCNI	CTCAG	2 cut(s)	37, 478
BspFNI	CGCG	1 cut(s)	50
BspLI	GGNNCC	3 cut(s)	273, 286, 308
BspMAI	CTGCAG	1 cut(s)	43
BspPI	GGATC	2 cut(s)	266, 279
BspT104I	TTCGAA	1 cut(s)	76
BspT107I	GGYRCC	1 cut(s)	284
BsrI	ACTGG	1 cut(s)	403
BssECI	CCNNGG	3 cut(s)	276, 301, 406
BssMI	GATC	3 cut(s)	93, 157, 271
BssNI	GRCGYC	1 cut(s)	35
BssT1I	CCWWGG	1 cut(s)	301
Bst2UI	CCWGG	2 cut(s)	119, 278
Bst4CI	ACNGT	1 cut(s)	358
BstACI	GRCGYC	1 cut(s)	35
BstBI	TTCGAA	1 cut(s)	76
BstC8I	GCNNGC	1 cut(s)	21
BstDEI	CTNAG	2 cut(s)	24, 486
BstDSI	CCRYGG	2 cut(s)	301, 406
BstF5I	GGATG	2 cut(s)	286, 391
BstFNI	CGCG	1 cut(s)	50
BstKTI	GATC	3 cut(s)	96, 160, 274
BstMAI	GTCTC	1 cut(s)	328
BstMBI	GATC	3 cut(s)	93, 157, 271
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 59
BstNI	CCWGG	2 cut(s)	119, 278
BstNSI	RCATGY	1 cut(s)	104
BstSCI	CCNGG	2 cut(s)	117, 276
BstSFI	CTRYAG	1 cut(s)	39
BstUI	CGCG	1 cut(s)	50
BstV1I	GCAGC	2 cut(s)	193, 211
BstX2I	RGATCY	2 cut(s)	157, 271
BstYI	RGATCY	2 cut(s)	157, 271
BsuI	GTATCC	1 cut(s)	413
BsuRI	GGCC	2 cut(s)	53, 117
BtgI	CCRYGG	2 cut(s)	301, 406
BtsCI	GGATG	2 cut(s)	286, 391
Cac8I	GCNNGC	1 cut(s)	21
CaiI	CAGNNNCTG	1 cut(s)	140
CseI	GACGC	2 cut(s)	24, 56
CspCI	CAANNNNNGTGG	2 cut(s)	277, 312
CviAII	CATG	3 cut(s)	101, 261, 302
CviJI	RGCY	9 cut(s)	5, 53, 62, 70, 117, 152, 184, 244, 391
CviKI_1	RGCY	9 cut(s)	5, 53, 62, 70, 117, 152, 184, 244, 391
DdeI	CTNAG	2 cut(s)	24, 486
DpnI	GATC	3 cut(s)	95, 159, 273
DpnII	GATC	3 cut(s)	93, 157, 271
EaeI	YGGCCR	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	301
Eco57I	CTGAAG	1 cut(s)	174
EcoRI	GAATTC	1 cut(s)	469
EcoRII	CCWGG	2 cut(s)	117, 276
EcoT14I	CCWWGG	1 cut(s)	301
ErhI	CCWWGG	1 cut(s)	301
FaeI	CATG	3 cut(s)	104, 264, 305
FaiI	YATR	9 cut(s)	102, 111, 164, 198, 262, 303, 372, 440, 508
FatI	CATG	3 cut(s)	100, 260, 301
Fnu4HI	GCNGC	4 cut(s)	51, 150, 182, 225
FokI	GGATG	2 cut(s)	293, 398
Fsp4HI	GCNGC	4 cut(s)	51, 150, 182, 225
GluI	GCNGC	4 cut(s)	51, 150, 182, 225
HaeIII	GGCC	2 cut(s)	53, 117
HgaI	GACGC	2 cut(s)	24, 56
Hin1I	GRCGYC	1 cut(s)	35
Hin1II	CATG	3 cut(s)	104, 264, 305
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HinfI	GANTC	2 cut(s)	14, 349
Hpy166II	GTNNAC	2 cut(s)	46, 461
Hpy8I	GTNNAC	2 cut(s)	46, 461
HpyCH4III	ACNGT	1 cut(s)	358
HpyCH4V	TGCA	3 cut(s)	41, 419, 482
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 59
HpyF3I	CTNAG	2 cut(s)	24, 486
Hsp92I	GRCGYC	1 cut(s)	35
Hsp92II	CATG	3 cut(s)	104, 264, 305
Kzo9I	GATC	3 cut(s)	93, 157, 271
LmnI	GCTCC	2 cut(s)	106, 241
LpnPI	CCDG	6 cut(s)	48, 104, 131, 263, 290, 384
Lsp1109I	GCAGC	2 cut(s)	193, 211
MaeIII	GTNAC	2 cut(s)	130, 235
MalI	GATC	3 cut(s)	95, 159, 273
MboI	GATC	3 cut(s)	93, 157, 271
MboII	GAAGA	2 cut(s)	167, 224
MflI	RGATCY	2 cut(s)	157, 271
MluCI	AATT	2 cut(s)	72, 469
MnlI	CCTC	3 cut(s)	404, 407, 481
MseI	TTAA	1 cut(s)	168
MspR9I	CCNGG	2 cut(s)	119, 278
MvaI	CCWGG	2 cut(s)	119, 278
MvnI	CGCG	1 cut(s)	50
MwoI	GCNNNNNNNGC	2 cut(s)	47, 59
NcoI	CCATGG	1 cut(s)	301
NdeII	GATC	3 cut(s)	93, 157, 271
NlaIII	CATG	3 cut(s)	104, 264, 305
NlaIV	GGNNCC	3 cut(s)	273, 286, 308
NmuCI	GTSAC	1 cut(s)	130
NspI	RCATGY	1 cut(s)	104
NspV	TTCGAA	1 cut(s)	76
PciI	ACATGT	1 cut(s)	100
PfeI	GAWTC	2 cut(s)	14, 349
PkrI	GCNGC	4 cut(s)	52, 151, 183, 226
PscI	ACATGT	1 cut(s)	100
PsiI	TTATAA	1 cut(s)	372
Psp6I	CCWGG	2 cut(s)	117, 276
PspGI	CCWGG	2 cut(s)	117, 276
PspN4I	GGNNCC	3 cut(s)	273, 286, 308
PstI	CTGCAG	1 cut(s)	43
PstNI	CAGNNNCTG	1 cut(s)	140
PsuI	RGATCY	2 cut(s)	157, 271
SaqAI	TTAA	1 cut(s)	168
SatI	GCNGC	4 cut(s)	51, 150, 182, 225
Sau3AI	GATC	3 cut(s)	93, 157, 271
ScrFI	CCNGG	2 cut(s)	119, 278
SetI	ASST	8 cut(s)	64, 72, 123, 186, 246, 393, 418, 492
SfcI	CTRYAG	1 cut(s)	39
SfuI	TTCGAA	1 cut(s)	76
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	2 cut(s)	72, 469
SsiI	CCGC	2 cut(s)	50, 149
SspI	AATATT	1 cut(s)	500
StyD4I	CCNGG	2 cut(s)	117, 276
StyI	CCWWGG	1 cut(s)	301
TaaI	ACNGT	1 cut(s)	358
TaqI	TCGA	1 cut(s)	76
TasI	AATT	2 cut(s)	72, 469
TauI	GCSGC	2 cut(s)	53, 152
TfiI	GAWTC	2 cut(s)	14, 349
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	2 cut(s)	181, 224
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	2 cut(s)	193, 444
TspGWI	ACGGA	2 cut(s)	254, 395
XapI	RAATTY	1 cut(s)	469
XceI	RCATGY	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.