Prupe.4G023100_v2.0.a1

15.4 kDa class V heat shock

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0014398
Physical Location & Seq
Forward (+)
1087431 .. 1088905
1475 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G023100.1

Sequence Viewer

Length: 402 bp
ATGGAGCTCCCAGCCTTCCACCCTTACCAATATGTCTTCCCTTCTCATCTCCTTTATCCATATCACTTGGCCCCTGAAAACTACGTCCACTGGACTGAGACCCCAGAGTCTCACATTTTCTCTGCTGACCTCCCTGGTGTTAGGAAAGAGGAAATAAAAGTAGAAGTAGAGGACTCAATATACCTCATAATTCGAACACAGAGAATTGATGAAGCCACAGAGCCCAGCAGGAACTTTATGAGGAAGTTTCGGATTCCAGGTAGGGTTGATCTCGAACGGATTTCAGCTGGATATGAAGATGGAGTATTGACAGTCACAGTGCCAAGATCTTTAAGGAGGACTTTTTTTATTGACCCAGCTGATGTCCCAGAACGGCTTGAAGTTCTGGCAAGAGCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
HSP20

Protein Analysis

134

Amino Acids

15.54

Weight (kDa)

5.52

Isoelectric Point (pI)

49.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014398)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21870
fragaria_vesca FvH4_3g02330
malus_domestica MD05G1343700.v1.1 MD10G1319400.v1.1
prunus_persica Prupe.4G023100_v2.0.a1
pyrus_communis pycom05g31310 pycom10g27030
rosa_chinensis RchiOBHm_Chr5g0003551
rosa_laevigata RLG00000031151
rosa_multiflora Rmu_sc0004279.1_g000008 Rmu_sc0009787.1_g000003
rosa_roxburghii Rroxscaffold_1G00072410
rosa_rugosa Rorug04G0404100
rosa_samantha Rh5AG031200 Rh5CG033700 Rh5DG030900
rosa_wichuraiana Rw5G002910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 106
AgsI TTSAA 1 cut(s) 380
AjnI CCWGG 2 cut(s) 133, 256
AluBI AGCT 4 cut(s) 7, 287, 359, 395
AluI AGCT 4 cut(s) 7, 287, 359, 395
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 2 cut(s) 92, 114
AoxI GGCC 1 cut(s) 69
ApeKI GCWGC 1 cut(s) 395
AspS9I GGNCC 1 cut(s) 70
AsuII TTCGAA 1 cut(s) 193
BanII GRGCYC 2 cut(s) 9, 225
BbsI GAAGAC 1 cut(s) 28
Bbv12I GWGCWC 1 cut(s) 9
BbvI GCAGC 1 cut(s) 382
BccI CCATC 1 cut(s) 293
BceAI ACGGC 1 cut(s) 389
BciT130I CCWGG 2 cut(s) 135, 258
BcoDI GTCTC 2 cut(s) 92, 114
BglII AGATCT 1 cut(s) 326
BisI GCNGC 1 cut(s) 396
BlsI GCNGC 1 cut(s) 397
Bme1390I CCNGG 2 cut(s) 135, 258
BmgT120I GGNCC 1 cut(s) 70
BmiI GGNNCC 1 cut(s) 72
BmrFI CCNGG 2 cut(s) 135, 258
BpiI GAAGAC 1 cut(s) 28
Bpu14I TTCGAA 1 cut(s) 193
BsaI GGTCTC 1 cut(s) 92
BsaJI CCNNGG 1 cut(s) 133
Bse1I ACTGG 1 cut(s) 95
BseBI CCWGG 2 cut(s) 135, 258
BseDI CCNNGG 1 cut(s) 133
BseMII CTCAG 1 cut(s) 87
BseNI ACTGG 1 cut(s) 95
BseXI GCAGC 1 cut(s) 382
BseYI CCCAGC 3 cut(s) 10, 224, 355
BshFI GGCC 1 cut(s) 71
BsiHKAI GWGCWC 1 cut(s) 9
BslFI GGGAC 1 cut(s) 350
BsmAI GTCTC 2 cut(s) 92, 114
BsmFI GGGAC 1 cut(s) 350
BsnI GGCC 1 cut(s) 71
Bso31I GGTCTC 1 cut(s) 92
Bsp119I TTCGAA 1 cut(s) 193
Bsp1286I GDGCHC 2 cut(s) 9, 225
Bsp143I GATC 2 cut(s) 268, 326
BspANI GGCC 1 cut(s) 71
BspCNI CTCAG 1 cut(s) 88
BspLI GGNNCC 1 cut(s) 72
BspT104I TTCGAA 1 cut(s) 193
BspTNI GGTCTC 1 cut(s) 92
BsrI ACTGG 1 cut(s) 95
BssECI CCNNGG 1 cut(s) 133
BssMI GATC 2 cut(s) 268, 326
Bst2UI CCWGG 2 cut(s) 135, 258
Bst4CI ACNGT 2 cut(s) 313, 319
BstAPI GCANNNNNTGC 1 cut(s) 395
BstBI TTCGAA 1 cut(s) 193
BstDEI CTNAG 1 cut(s) 96
BstKTI GATC 2 cut(s) 271, 329
BstMAI GTCTC 2 cut(s) 92, 114
BstMBI GATC 2 cut(s) 268, 326
BstMWI GCNNNNNNNGC 1 cut(s) 395
BstNI CCWGG 2 cut(s) 135, 258
BstSCI CCNGG 2 cut(s) 133, 256
BstV1I GCAGC 1 cut(s) 382
BstV2I GAAGAC 1 cut(s) 28
BstX2I RGATCY 1 cut(s) 326
BstYI RGATCY 1 cut(s) 326
BsuRI GGCC 1 cut(s) 71
BtsIMutI CAGTG 2 cut(s) 88, 324
Cfr13I GGNCC 1 cut(s) 70
CviJI RGCY 9 cut(s) 7, 14, 71, 215, 223, 287, 359, 376, 395
CviKI_1 RGCY 9 cut(s) 7, 14, 71, 215, 223, 287, 359, 376, 395
DdeI CTNAG 1 cut(s) 96
DpnI GATC 2 cut(s) 270, 328
DpnII GATC 2 cut(s) 268, 326
DrdI GACNNNNNNGTC 1 cut(s) 106
DseDI GACNNNNNNGTC 1 cut(s) 106
Ecl136II GAGCTC 1 cut(s) 7
Eco24I GRGCYC 2 cut(s) 9, 225
Eco31I GGTCTC 1 cut(s) 92
Eco53kI GAGCTC 1 cut(s) 7
EcoICRI GAGCTC 1 cut(s) 7
EcoRII CCWGG 2 cut(s) 133, 256
EcoT38I GRGCYC 2 cut(s) 9, 225
FaiI YATR 6 cut(s) 33, 61, 181, 188, 239, 294
FalI AAGNNNNNCTT 3 cut(s) 325, 357, 382
FaqI GGGAC 1 cut(s) 350
Fnu4HI GCNGC 1 cut(s) 396
FriOI GRGCYC 2 cut(s) 9, 225
Fsp4HI GCNGC 1 cut(s) 396
GluI GCNGC 1 cut(s) 396
GsaI CCCAGC 3 cut(s) 14, 228, 359
HaeIII GGCC 1 cut(s) 71
HinfI GANTC 3 cut(s) 107, 173, 253
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 1 cut(s) 252
Hpy188III TCNNGA 1 cut(s) 272
Hpy8I GTNNAC 1 cut(s) 88
HpyAV CCTTC 2 cut(s) 25, 51
HpyCH4III ACNGT 2 cut(s) 313, 319
HpyCH4IV ACGT 1 cut(s) 84
HpyF10VI GCNNNNNNNGC 1 cut(s) 395
HpyF3I CTNAG 1 cut(s) 96
HpySE526I ACGT 1 cut(s) 84
Kzo9I GATC 2 cut(s) 268, 326
LmnI GCTCC 2 cut(s) 4, 12
Lsp1109I GCAGC 1 cut(s) 382
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 1 cut(s) 313
MalI GATC 2 cut(s) 270, 328
MboI GATC 2 cut(s) 268, 326
MboII GAAGA 2 cut(s) 28, 308
MflI RGATCY 1 cut(s) 326
MhlI GDGCHC 2 cut(s) 9, 225
MluCI AATT 2 cut(s) 189, 204
MlyI GAGTC 2 cut(s) 116, 167
MnlI CCTC 6 cut(s) 140, 142, 163, 194, 234, 330
MseI TTAA 1 cut(s) 332
MspA1I CMGCKG 2 cut(s) 287, 359
MspR9I CCNGG 2 cut(s) 135, 258
MvaI CCWGG 2 cut(s) 135, 258
MwoI GCNNNNNNNGC 1 cut(s) 395
NdeII GATC 2 cut(s) 268, 326
NlaIV GGNNCC 1 cut(s) 72
NmuCI GTSAC 1 cut(s) 313
NspV TTCGAA 1 cut(s) 193
PfeI GAWTC 1 cut(s) 253
PkrI GCNGC 1 cut(s) 397
PleI GAGTC 2 cut(s) 115, 167
PpsI GAGTC 2 cut(s) 115, 167
Psp124BI GAGCTC 1 cut(s) 9
Psp6I CCWGG 2 cut(s) 133, 256
PspFI CCCAGC 3 cut(s) 10, 224, 355
PspGI CCWGG 2 cut(s) 133, 256
PspN4I GGNNCC 1 cut(s) 72
PspPI GGNCC 1 cut(s) 70
PsuI RGATCY 1 cut(s) 326
PvuII CAGCTG 2 cut(s) 287, 359
SacI GAGCTC 1 cut(s) 9
SaqAI TTAA 1 cut(s) 332
SatI GCNGC 1 cut(s) 396
Sau3AI GATC 2 cut(s) 268, 326
Sau96I GGNCC 1 cut(s) 70
SchI GAGTC 2 cut(s) 116, 167
ScrFI CCNGG 2 cut(s) 135, 258
SduI GDGCHC 2 cut(s) 9, 225
SetI ASST 8 cut(s) 9, 87, 132, 186, 262, 289, 361, 397
SfuI TTCGAA 1 cut(s) 193
Sse9I AATT 2 cut(s) 189, 204
SstI GAGCTC 1 cut(s) 9
StyD4I CCNGG 2 cut(s) 133, 256
TaaI ACNGT 2 cut(s) 313, 319
TaiI ACGT 1 cut(s) 87
TaqI TCGA 2 cut(s) 193, 273
TasI AATT 2 cut(s) 189, 204
TfiI GAWTC 1 cut(s) 253
Tru1I TTAA 1 cut(s) 332
Tru9I TTAA 1 cut(s) 332
TscAI CASTG 2 cut(s) 95, 324
TseFI GTSAC 1 cut(s) 313
TseI GCWGC 1 cut(s) 395
Tsp45I GTSAC 1 cut(s) 313
TspDTI ATGAA 2 cut(s) 225, 309
TspGWI ACGGA 1 cut(s) 292
TspRI CASTG 2 cut(s) 95, 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.