Rroxscaffold_1G00072410

15.4 kDa class V heat shock

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0014398
Physical Location & Seq
Reverse (-)
93477929 .. 93478618
690 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00072410.1

Sequence Viewer

Length: 429 bp
ATGGAGCTCCCAAACCAAAACTTCCGGCTTTACCAATATGTCTTCCCCTCTCATCTTGTTTATCCATATCACTTGACCCCAGAAAACTATGTGCACTGGACTGAAACCCCAGAGTCTCACATTTTCTCAGCTGACCTCCCTGGTGTGAGGAAGGAGGAGATAAAAGTAGAAGTGGAGGACTCAATATACCTGATAATCAGAACACAGAGACTTGATGATGATGGTGATGGTGATGAGGAGTCCACAGAGGCTAGGAGGACCTTCACGAGGAAGTTTCGGCTTCCAGGTATGGTCGACATCGAAAGAATCTCAGCTGCATATGAAGATGGTGTGTTGACAATCACAGTGCCAAGGTTATTGAGGAGGAGTTTCTTTATTGAACCAGCTGATATGCCTGAAAGGCTTGATGTTCTTGCAAGAGCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
HSP20

Protein Analysis

142

Amino Acids

16.64

Weight (kDa)

4.9

Isoelectric Point (pI)

58.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP20 PF00011 33 - 119 3.1e-18 Hsp20/alpha crystallin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014398)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21870
fragaria_vesca FvH4_3g02330
malus_domestica MD05G1343700.v1.1 MD10G1319400.v1.1
prunus_persica Prupe.4G023100_v2.0.a1
pyrus_communis pycom05g31310 pycom10g27030
rosa_chinensis RchiOBHm_Chr5g0003551
rosa_laevigata RLG00000031151
rosa_multiflora Rmu_sc0004279.1_g000008 Rmu_sc0009787.1_g000003
rosa_roxburghii Rroxscaffold_1G00072410
rosa_rugosa Rorug04G0404100
rosa_samantha Rh5AG031200 Rh5CG033700 Rh5DG030900
rosa_wichuraiana Rw5G002910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 294
AfiI CCNNNNNNNGG 1 cut(s) 267
AgsI TTSAA 1 cut(s) 380
AjnI CCWGG 2 cut(s) 139, 283
AluBI AGCT 5 cut(s) 7, 131, 314, 386, 422
AluI AGCT 5 cut(s) 7, 131, 314, 386, 422
Alw21I GWGCWC 2 cut(s) 9, 96
Alw26I GTCTC 2 cut(s) 120, 202
Alw44I GTGCAC 1 cut(s) 92
ApaLI GTGCAC 1 cut(s) 92
ApeKI GCWGC 2 cut(s) 314, 422
AspS9I GGNCC 1 cut(s) 258
AsuHPI GGTGA 2 cut(s) 236, 242
AvaII GGWCC 1 cut(s) 258
BaeGI GKGCMC 1 cut(s) 96
BanII GRGCYC 1 cut(s) 9
BauI CACGAG 1 cut(s) 265
BbsI GAAGAC 1 cut(s) 34
Bbv12I GWGCWC 2 cut(s) 9, 96
BbvI GCAGC 2 cut(s) 301, 409
BccI CCATC 3 cut(s) 215, 221, 320
BciT130I CCWGG 2 cut(s) 141, 285
BcoDI GTCTC 2 cut(s) 120, 202
BfaI CTAG 1 cut(s) 252
BglI GCCNNNNNGGC 1 cut(s) 400
BisI GCNGC 2 cut(s) 315, 423
BlsI GCNGC 2 cut(s) 316, 424
Bme1390I CCNGG 2 cut(s) 141, 285
Bme18I GGWCC 1 cut(s) 258
BmgT120I GGNCC 1 cut(s) 258
BmrFI CCNGG 2 cut(s) 141, 285
BpiI GAAGAC 1 cut(s) 34
BsaJI CCNNGG 2 cut(s) 139, 350
Bsc4I CCNNNNNNNGG 1 cut(s) 267
Bse1I ACTGG 1 cut(s) 101
BseBI CCWGG 2 cut(s) 141, 285
BseDI CCNNGG 2 cut(s) 139, 350
BseLI CCNNNNNNNGG 1 cut(s) 267
BseMII CTCAG 2 cut(s) 141, 324
BseNI ACTGG 1 cut(s) 101
BseRI GAGGAG 4 cut(s) 170, 251, 376, 379
BseSI GKGCMC 1 cut(s) 96
BseXI GCAGC 2 cut(s) 301, 409
BsiHKAI GWGCWC 2 cut(s) 9, 96
BsiSI CCGG 1 cut(s) 25
BslI CCNNNNNNNGG 1 cut(s) 267
BsmAI GTCTC 2 cut(s) 120, 202
Bsp1286I GDGCHC 2 cut(s) 9, 96
BspCNI CTCAG 2 cut(s) 140, 323
BsrI ACTGG 1 cut(s) 101
BssECI CCNNGG 2 cut(s) 139, 350
BssSI CACGAG 1 cut(s) 265
BssT1I CCWWGG 1 cut(s) 350
Bst2BI CACGAG 1 cut(s) 265
Bst2UI CCWGG 2 cut(s) 141, 285
Bst4CI ACNGT 1 cut(s) 346
BstAPI GCANNNNNTGC 1 cut(s) 422
BstDEI CTNAG 2 cut(s) 127, 310
BstENI CCTNNNNNAGG 1 cut(s) 265
BstMAI GTCTC 2 cut(s) 120, 202
BstMWI GCNNNNNNNGC 2 cut(s) 400, 422
BstNI CCWGG 2 cut(s) 141, 285
BstSCI CCNGG 2 cut(s) 139, 283
BstSLI GKGCMC 1 cut(s) 96
BstV1I GCAGC 2 cut(s) 301, 409
BstV2I GAAGAC 1 cut(s) 34
BtsIMutI CAGTG 2 cut(s) 94, 351
Cfr13I GGNCC 1 cut(s) 258
CviJI RGCY 9 cut(s) 7, 28, 131, 251, 280, 314, 386, 403, 422
CviKI_1 RGCY 9 cut(s) 7, 28, 131, 251, 280, 314, 386, 403, 422
DdeI CTNAG 2 cut(s) 127, 310
Ecl136II GAGCTC 1 cut(s) 7
Eco130I CCWWGG 1 cut(s) 350
Eco24I GRGCYC 1 cut(s) 9
Eco47I GGWCC 1 cut(s) 258
Eco53kI GAGCTC 1 cut(s) 7
EcoICRI GAGCTC 1 cut(s) 7
EcoNI CCTNNNNNAGG 1 cut(s) 265
EcoO109I RGGNCCY 1 cut(s) 258
EcoRII CCWGG 2 cut(s) 139, 283
EcoT14I CCWWGG 1 cut(s) 350
EcoT38I GRGCYC 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 350
FaiI YATR 8 cut(s) 39, 67, 90, 187, 290, 319, 321, 392
FalI AAGNNNNNCTT 1 cut(s) 409
FauNDI CATATG 1 cut(s) 319
FblI GTMKAC 1 cut(s) 294
Fnu4HI GCNGC 2 cut(s) 315, 423
FriOI GRGCYC 1 cut(s) 9
Fsp4HI GCNGC 2 cut(s) 315, 423
FspBI CTAG 1 cut(s) 252
GluI GCNGC 2 cut(s) 315, 423
HapII CCGG 1 cut(s) 25
HincII GTYRAC 2 cut(s) 295, 336
HindII GTYRAC 2 cut(s) 295, 336
HinfI GANTC 4 cut(s) 113, 179, 239, 306
HpaII CCGG 1 cut(s) 25
HphI GGTGA 2 cut(s) 236, 242
Hpy166II GTNNAC 4 cut(s) 94, 243, 295, 336
Hpy188I TCNGA 1 cut(s) 200
Hpy188III TCNNGA 1 cut(s) 265
Hpy8I GTNNAC 4 cut(s) 94, 243, 295, 336
HpyAV CCTTC 2 cut(s) 145, 271
HpyCH4III ACNGT 1 cut(s) 346
HpyCH4V TGCA 3 cut(s) 94, 317, 416
HpyF10VI GCNNNNNNNGC 2 cut(s) 400, 422
HpyF3I CTNAG 2 cut(s) 127, 310
LmnI GCTCC 2 cut(s) 4, 12
Lsp1109I GCAGC 2 cut(s) 301, 409
MaeI CTAG 1 cut(s) 252
MboII GAAGA 2 cut(s) 34, 335
MhlI GDGCHC 2 cut(s) 9, 96
MlyI GAGTC 3 cut(s) 122, 173, 248
MspA1I CMGCKG 3 cut(s) 131, 314, 386
MspI CCGG 1 cut(s) 25
MspR9I CCNGG 2 cut(s) 141, 285
MvaI CCWGG 2 cut(s) 141, 285
MwoI GCNNNNNNNGC 2 cut(s) 400, 422
NdeI CATATG 1 cut(s) 319
PfeI GAWTC 1 cut(s) 306
PkrI GCNGC 2 cut(s) 316, 424
PleI GAGTC 3 cut(s) 121, 173, 247
PpsI GAGTC 3 cut(s) 121, 173, 247
PpuMI RGGWCCY 1 cut(s) 258
Psp124BI GAGCTC 1 cut(s) 9
Psp5II RGGWCCY 1 cut(s) 258
Psp6I CCWGG 2 cut(s) 139, 283
PspGI CCWGG 2 cut(s) 139, 283
PspPI GGNCC 1 cut(s) 258
PspPPI RGGWCCY 1 cut(s) 258
PvuII CAGCTG 3 cut(s) 131, 314, 386
SacI GAGCTC 1 cut(s) 9
SalI GTCGAC 1 cut(s) 293
SatI GCNGC 2 cut(s) 315, 423
Sau96I GGNCC 1 cut(s) 258
SchI GAGTC 3 cut(s) 122, 173, 248
ScrFI CCNGG 2 cut(s) 141, 285
SduI GDGCHC 2 cut(s) 9, 96
SinI GGWCC 1 cut(s) 258
SspMI CTAG 1 cut(s) 252
SstI GAGCTC 1 cut(s) 9
StyD4I CCNGG 2 cut(s) 139, 283
StyI CCWWGG 1 cut(s) 350
TaaI ACNGT 1 cut(s) 346
TaqI TCGA 2 cut(s) 294, 300
TfiI GAWTC 1 cut(s) 306
TscAI CASTG 2 cut(s) 101, 351
TseI GCWGC 2 cut(s) 314, 422
TspDTI ATGAA 1 cut(s) 336
TspRI CASTG 2 cut(s) 101, 351
VneI GTGCAC 1 cut(s) 92
VpaK11BI GGWCC 1 cut(s) 258
XagI CCTNNNNNAGG 1 cut(s) 265
XmiI GTMKAC 1 cut(s) 294
XspI CTAG 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.