Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009787.1

Orthogroup ID

OG0014398

Physical Location & Seq

Genomic Coordinates Reverse (-)

11673 .. 12183

Gene Structure 511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009787.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

atggagctcccaaaccaatacttccagctttaccgatatgtcttcccctctcatcttgtttatccatatcacttgaccccagaaaactatgtgcactggactgaaaccccagagtctcacattttctcagctgacctccctggtgtgaggaaggaggagataaaagtggaagtggaggactcaatatacctgataatcagaacacagaggcttgatgatgatggtgatggtgatgaggagtccacagaggctaggaggaccttcacgaggaagtttcggcttccgggtatggtcgatatcgaaagaatctcagctgcatatgaagatggtgtgttgacaatcacagtgccaaggtcattgaggaggagtttctttattgaaccagctgacatgcctgaaaggcttgatgttcttgcaagagctgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

142

Amino Acids

16.67

Weight (kDa)

4.9

Isoelectric Point (pI)

60.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014398)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21870
fragaria_vesca	FvH4_3g02330
malus_domestica	MD05G1343700.v1.1 MD10G1319400.v1.1
prunus_persica	Prupe.4G023100_v2.0.a1
pyrus_communis	pycom05g31310 pycom10g27030
rosa_chinensis	RchiOBHm_Chr5g0003551
rosa_laevigata	RLG00000031151
rosa_multiflora	Rmu_sc0004279.1_g000008 Rmu_sc0009787.1_g000003
rosa_roxburghii	Rroxscaffold_1G00072410
rosa_rugosa	Rorug04G0404100
rosa_samantha	Rh5AG031200 Rh5CG033700 Rh5DG030900
rosa_wichuraiana	Rw5G002910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	267
AgsI	TTSAA	1 cut(s)	380
AjnI	CCWGG	1 cut(s)	139
AluBI	AGCT	6 cut(s)	7, 28, 131, 314, 386, 422
AluI	AGCT	6 cut(s)	7, 28, 131, 314, 386, 422
Alw21I	GWGCWC	2 cut(s)	9, 96
Alw26I	GTCTC	1 cut(s)	120
Alw44I	GTGCAC	1 cut(s)	92
ApaLI	GTGCAC	1 cut(s)	92
ApeKI	GCWGC	2 cut(s)	314, 422
AspS9I	GGNCC	1 cut(s)	258
AsuC2I	CCSGG	1 cut(s)	285
AsuHPI	GGTGA	2 cut(s)	236, 242
AvaII	GGWCC	1 cut(s)	258
BaeGI	GKGCMC	1 cut(s)	96
BanII	GRGCYC	1 cut(s)	9
BauI	CACGAG	1 cut(s)	265
BbsI	GAAGAC	1 cut(s)	34
Bbv12I	GWGCWC	2 cut(s)	9, 96
BbvI	GCAGC	2 cut(s)	301, 409
BccI	CCATC	3 cut(s)	215, 221, 320
BciT130I	CCWGG	1 cut(s)	141
BcnI	CCSGG	1 cut(s)	285
BcoDI	GTCTC	1 cut(s)	120
BfaI	CTAG	1 cut(s)	252
BglI	GCCNNNNNGGC	1 cut(s)	400
BisI	GCNGC	2 cut(s)	315, 423
BlsI	GCNGC	2 cut(s)	316, 424
Bme1390I	CCNGG	2 cut(s)	141, 285
Bme18I	GGWCC	1 cut(s)	258
BmgT120I	GGNCC	1 cut(s)	258
BmrFI	CCNGG	2 cut(s)	141, 285
BpiI	GAAGAC	1 cut(s)	34
BpuMI	CCSGG	1 cut(s)	285
BsaJI	CCNNGG	2 cut(s)	139, 350
Bsc4I	CCNNNNNNNGG	1 cut(s)	267
Bse1I	ACTGG	1 cut(s)	101
BseBI	CCWGG	1 cut(s)	141
BseDI	CCNNGG	2 cut(s)	139, 350
BseLI	CCNNNNNNNGG	1 cut(s)	267
BseMII	CTCAG	2 cut(s)	141, 324
BseNI	ACTGG	1 cut(s)	101
BseRI	GAGGAG	4 cut(s)	170, 251, 376, 379
BseSI	GKGCMC	1 cut(s)	96
BseXI	GCAGC	2 cut(s)	301, 409
BsiHKAI	GWGCWC	2 cut(s)	9, 96
BsiSI	CCGG	1 cut(s)	284
BslI	CCNNNNNNNGG	1 cut(s)	267
BsmAI	GTCTC	1 cut(s)	120
Bsp1286I	GDGCHC	2 cut(s)	9, 96
BspCNI	CTCAG	2 cut(s)	140, 323
BsrI	ACTGG	1 cut(s)	101
BssECI	CCNNGG	2 cut(s)	139, 350
BssSI	CACGAG	1 cut(s)	265
BssT1I	CCWWGG	1 cut(s)	350
Bst2BI	CACGAG	1 cut(s)	265
Bst2UI	CCWGG	1 cut(s)	141
Bst4CI	ACNGT	1 cut(s)	346
BstAPI	GCANNNNNTGC	1 cut(s)	422
BstDEI	CTNAG	2 cut(s)	127, 310
BstENI	CCTNNNNNAGG	1 cut(s)	265
BstMAI	GTCTC	1 cut(s)	120
BstMWI	GCNNNNNNNGC	2 cut(s)	400, 422
BstNI	CCWGG	1 cut(s)	141
BstNSI	RCATGY	1 cut(s)	394
BstSCI	CCNGG	2 cut(s)	139, 283
BstSLI	GKGCMC	1 cut(s)	96
BstV1I	GCAGC	2 cut(s)	301, 409
BstV2I	GAAGAC	1 cut(s)	34
BtsIMutI	CAGTG	2 cut(s)	94, 351
Cfr13I	GGNCC	1 cut(s)	258
CviAII	CATG	1 cut(s)	391
DdeI	CTNAG	2 cut(s)	127, 310
Ecl136II	GAGCTC	1 cut(s)	7
Eco130I	CCWWGG	1 cut(s)	350
Eco24I	GRGCYC	1 cut(s)	9
Eco32I	GATATC	1 cut(s)	298
Eco47I	GGWCC	1 cut(s)	258
Eco53kI	GAGCTC	1 cut(s)	7
EcoICRI	GAGCTC	1 cut(s)	7
EcoNI	CCTNNNNNAGG	1 cut(s)	265
EcoO109I	RGGNCCY	1 cut(s)	258
EcoRII	CCWGG	1 cut(s)	139
EcoRV	GATATC	1 cut(s)	298
EcoT14I	CCWWGG	1 cut(s)	350
EcoT38I	GRGCYC	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	350
FaeI	CATG	1 cut(s)	394
FaiI	YATR	8 cut(s)	39, 67, 90, 187, 290, 319, 321, 392
FalI	AAGNNNNNCTT	1 cut(s)	409
FatI	CATG	1 cut(s)	390
FauNDI	CATATG	1 cut(s)	319
Fnu4HI	GCNGC	2 cut(s)	315, 423
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	2 cut(s)	315, 423
FspBI	CTAG	1 cut(s)	252
GluI	GCNGC	2 cut(s)	315, 423
HapII	CCGG	1 cut(s)	284
Hin1II	CATG	1 cut(s)	394
HincII	GTYRAC	1 cut(s)	336
HindII	GTYRAC	1 cut(s)	336
HinfI	GANTC	4 cut(s)	113, 179, 239, 306
HpaII	CCGG	1 cut(s)	284
HphI	GGTGA	2 cut(s)	236, 242
Hpy166II	GTNNAC	3 cut(s)	94, 243, 336
Hpy188I	TCNGA	1 cut(s)	200
Hpy188III	TCNNGA	1 cut(s)	265
Hpy8I	GTNNAC	3 cut(s)	94, 243, 336
HpyAV	CCTTC	2 cut(s)	145, 271
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4V	TGCA	3 cut(s)	94, 317, 416
HpyF10VI	GCNNNNNNNGC	2 cut(s)	400, 422
HpyF3I	CTNAG	2 cut(s)	127, 310
Hsp92II	CATG	1 cut(s)	394
LmnI	GCTCC	2 cut(s)	4, 12
Lsp1109I	GCAGC	2 cut(s)	301, 409
MaeI	CTAG	1 cut(s)	252
MboII	GAAGA	2 cut(s)	34, 335
MhlI	GDGCHC	2 cut(s)	9, 96
MlyI	GAGTC	3 cut(s)	122, 173, 248
MspA1I	CMGCKG	3 cut(s)	131, 314, 386
MspI	CCGG	1 cut(s)	284
MspR9I	CCNGG	2 cut(s)	141, 285
MvaI	CCWGG	1 cut(s)	141
MwoI	GCNNNNNNNGC	2 cut(s)	400, 422
NciI	CCSGG	1 cut(s)	285
NdeI	CATATG	1 cut(s)	319
NlaIII	CATG	1 cut(s)	394
NspI	RCATGY	1 cut(s)	394
PfeI	GAWTC	1 cut(s)	306
PkrI	GCNGC	2 cut(s)	316, 424
PleI	GAGTC	3 cut(s)	121, 173, 247
PpsI	GAGTC	3 cut(s)	121, 173, 247
PpuMI	RGGWCCY	1 cut(s)	258
Psp124BI	GAGCTC	1 cut(s)	9
Psp5II	RGGWCCY	1 cut(s)	258
Psp6I	CCWGG	1 cut(s)	139
PspGI	CCWGG	1 cut(s)	139
PspPI	GGNCC	1 cut(s)	258
PspPPI	RGGWCCY	1 cut(s)	258
PvuII	CAGCTG	3 cut(s)	131, 314, 386
SacI	GAGCTC	1 cut(s)	9
SatI	GCNGC	2 cut(s)	315, 423
Sau96I	GGNCC	1 cut(s)	258
SchI	GAGTC	3 cut(s)	122, 173, 248
ScrFI	CCNGG	2 cut(s)	141, 285
SduI	GDGCHC	2 cut(s)	9, 96
SinI	GGWCC	1 cut(s)	258
SspMI	CTAG	1 cut(s)	252
SstI	GAGCTC	1 cut(s)	9
StyD4I	CCNGG	2 cut(s)	139, 283
StyI	CCWWGG	1 cut(s)	350
TaaI	ACNGT	1 cut(s)	346
TaqI	TCGA	2 cut(s)	294, 300
TfiI	GAWTC	1 cut(s)	306
TscAI	CASTG	2 cut(s)	101, 351
TseI	GCWGC	2 cut(s)	314, 422
TspDTI	ATGAA	1 cut(s)	336
TspRI	CASTG	2 cut(s)	101, 351
VneI	GTGCAC	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	258
XagI	CCTNNNNNAGG	1 cut(s)	265
XceI	RCATGY	1 cut(s)	394
XspI	CTAG	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.