Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0007730

Physical Location & Seq

Genomic Coordinates Forward (+)

1821871 .. 1824957

Gene Structure 3087 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G038800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGCTGGGCCTGGACTATGGTGGACTTGGAGGGTGCTTGGGTCTCTGCTATTGGTGCCAGGAATTCTGGGTTGGGGCAAAGAAGGCCACTTCGCAATTTGCAAGATAGCAGAGGGCTTTCTGAGTAAAGATGCTCTGGCTGCAGTAAAAGAATTGCTTCCAGCGTCTGCCGCGGGTGATCTTGCTGAAGTTTGTTCCTGGCCTGATGAGATTCGATACCATTTACGGTGGAGTAGTGCTTTACATTATGTTGACACGCCAGATTTTTTGTGTAACTACAAATATTGCAGAGACTGTCATGACCCTGCTGGACATAAAGATAGATGTGTGACCGGAGCAATTTACAACTATACAATGCAACTCTTTTCAGCTTATCATGACTCCATCTCTGAATCAAAGTACAACTTAACTGAAGCACTTATGTTCTTGGCTCATTTTATTGGGGATGTCCATCAGCCCCTACATGTTGGCTTCACTGGAGATGCAGGCGGGAACACAATAATAGTCCGATGGTATCGCAGGAAGACAAATCTCCACCATGTCTGGGATAATATGATCATTGAATCTGCTGTAAAGACATTCTATAGTAAAGATCTTGCAATCATGATAAAGGCCATTGAAAGTAATATTACGGATGGCTGGTCCAATGATATATCAGAATGGCAGATTTGTGCAAATAATCAGACTGTGTGTCCAAATGAATATGCTTCTGAAAGCATTAGTTTGGCATGCAAATATGCTTACAGAAATGCCACACCAGGAAGCACACTGACAGATGATTACTTCCTTTCTCGGCTACCTGTTGTGGAGAAGAGGATAGCTCAAAGTGGGGTCCGCCTGGCTGCTACCCTCAATCGTGTTTTCTCTTCTGAAGCAAAAATTGCTGAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000014 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005575 GO:0005576 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043765 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

S1-P1_nuclease

Protein Analysis

298

Amino Acids

33.25

Weight (kDa)

6.11

Isoelectric Point (pI)

38.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007730)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21585 AT4G21585 AT4G21585 AT4G21585 AT4G21585 AT4G21585 AT4G21590 AT4G21590 AT4G21600
fragaria_vesca	FvH4_3g04350 FvH4_3g04350
malus_domestica	MD05G1323700.v1.1
prunus_persica	Prupe.4G038800_v2.0.a1
pyrus_communis	pycom05g29810
rosa_chinensis	RchiOBHm_Chr5g0006741
rosa_laevigata	RLG00000031424
rosa_multiflora	Rmu_sc0017347.1_g000006 Rmu_sc0018387.1_g000005
rosa_rugosa	Rorug04G0424100
rosa_samantha	Rh5AG052000 Rh5BG050900 Rh5CG059500 Rh5DG050000
rosa_wichuraiana	Rw5G005250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	55
AccII	CGCG	1 cut(s)	173
AciI	CCGC	4 cut(s)	171, 173, 489, 835
AcsI	RAATTY	1 cut(s)	63
AcuI	CTGAAG	3 cut(s)	207, 432, 891
AfaI	GTAC	1 cut(s)	401
AfiI	CCNNNNNNNGG	1 cut(s)	544
AflIII	ACRYGT	1 cut(s)	463
AgsI	TTSAA	2 cut(s)	563, 620
AhdI	GACNNNNNGTC	1 cut(s)	690
AjnI	CCWGG	5 cut(s)	10, 58, 197, 757, 837
AjuI	GAANNNNNNNTTGG	2 cut(s)	55, 87
AluBI	AGCT	2 cut(s)	371, 821
AluI	AGCT	2 cut(s)	371, 821
Alw26I	GTCTC	2 cut(s)	48, 285
AlwNI	CAGNNNCTG	2 cut(s)	167, 294
AoxI	GGCC	4 cut(s)	8, 85, 200, 612
ApeKI	GCWGC	2 cut(s)	140, 842
ApoI	RAATTY	1 cut(s)	63
Asp700I	GAANNNNTTC	1 cut(s)	156
AspS9I	GGNCC	3 cut(s)	8, 642, 832
AsuHPI	GGTGA	1 cut(s)	188
AvaII	GGWCC	2 cut(s)	642, 832
BanI	GGYRCC	1 cut(s)	55
BbsI	GAAGAC	1 cut(s)	530
BbvI	GCAGC	2 cut(s)	127, 829
BccI	CCATC	4 cut(s)	392, 459, 504, 629
BciT130I	CCWGG	5 cut(s)	12, 60, 199, 759, 839
BclI	TGATCA	1 cut(s)	555
BcoDI	GTCTC	2 cut(s)	48, 285
BfmI	CTRYAG	2 cut(s)	141, 583
BglII	AGATCT	1 cut(s)	592
BisI	GCNGC	3 cut(s)	141, 171, 843
BlsI	GCNGC	3 cut(s)	142, 172, 844
Bme1390I	CCNGG	5 cut(s)	12, 60, 199, 759, 839
Bme18I	GGWCC	2 cut(s)	642, 832
BmeRI	GACNNNNNGTC	1 cut(s)	690
BmgT120I	GGNCC	3 cut(s)	8, 642, 832
BmiI	GGNNCC	2 cut(s)	57, 833
BmrFI	CCNGG	5 cut(s)	12, 60, 199, 759, 839
BmsI	GCATC	2 cut(s)	121, 472
BpiI	GAAGAC	1 cut(s)	530
BplI	GAGNNNNNCTC	2 cut(s)	805, 837
BpmI	CTGGAG	1 cut(s)	498
BsaBI	GATNNNNATC	1 cut(s)	450
BsaI	GGTCTC	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	171
BsaWI	WCCGGW	1 cut(s)	332
Bsc4I	CCNNNNNNNGG	1 cut(s)	544
Bse1I	ACTGG	1 cut(s)	481
Bse8I	GATNNNNATC	1 cut(s)	450
BseBI	CCWGG	5 cut(s)	12, 60, 199, 759, 839
BseDI	CCNNGG	1 cut(s)	171
BseGI	GGATG	2 cut(s)	451, 640
BseJI	GATNNNNATC	1 cut(s)	450
BseLI	CCNNNNNNNGG	1 cut(s)	544
BseMII	CTCAG	1 cut(s)	113
BseNI	ACTGG	1 cut(s)	481
BseXI	GCAGC	2 cut(s)	127, 829
BseYI	CCCAGC	1 cut(s)	5
Bsh1236I	CGCG	1 cut(s)	173
BshFI	GGCC	4 cut(s)	10, 87, 202, 614
BshNI	GGYRCC	1 cut(s)	55
BsiSI	CCGG	1 cut(s)	333
BslI	CCNNNNNNNGG	1 cut(s)	544
BsmAI	GTCTC	2 cut(s)	48, 285
BsnI	GGCC	4 cut(s)	10, 87, 202, 614
Bso31I	GGTCTC	1 cut(s)	48
Bsp143I	GATC	3 cut(s)	178, 555, 592
BspACI	CCGC	4 cut(s)	171, 173, 489, 835
BspANI	GGCC	4 cut(s)	10, 87, 202, 614
BspCNI	CTCAG	1 cut(s)	114
BspFNI	CGCG	1 cut(s)	173
BspHI	TCATGA	3 cut(s)	298, 376, 603
BspLI	GGNNCC	2 cut(s)	57, 833
BspMAI	CTGCAG	1 cut(s)	145
BspT107I	GGYRCC	1 cut(s)	55
BspTNI	GGTCTC	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	481
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	3 cut(s)	178, 555, 592
Bst2UI	CCWGG	5 cut(s)	12, 60, 199, 759, 839
Bst4CI	ACNGT	3 cut(s)	228, 296, 688
Bst6I	CTCTTC	2 cut(s)	806, 871
BstAPI	GCANNNNNTGC	1 cut(s)	881
BstC8I	GCNNGC	2 cut(s)	487, 730
BstDEI	CTNAG	1 cut(s)	122
BstDSI	CCRYGG	1 cut(s)	171
BstF5I	GGATG	2 cut(s)	451, 640
BstFNI	CGCG	1 cut(s)	173
BstKTI	GATC	3 cut(s)	181, 558, 595
BstMAI	GTCTC	2 cut(s)	48, 285
BstMBI	GATC	3 cut(s)	178, 555, 592
BstMWI	GCNNNNNNNGC	5 cut(s)	55, 84, 140, 170, 881
BstNI	CCWGG	5 cut(s)	12, 60, 199, 759, 839
BstNSI	RCATGY	2 cut(s)	467, 732
BstSCI	CCNGG	5 cut(s)	10, 58, 197, 757, 837
BstSFI	CTRYAG	2 cut(s)	141, 583
BstUI	CGCG	1 cut(s)	173
BstV1I	GCAGC	2 cut(s)	127, 829
BstV2I	GAAGAC	1 cut(s)	530
BstX2I	RGATCY	1 cut(s)	592
BstYI	RGATCY	1 cut(s)	592
BsuRI	GGCC	4 cut(s)	10, 87, 202, 614
BtgI	CCRYGG	1 cut(s)	171
BtsCI	GGATG	2 cut(s)	451, 640
BtsIMutI	CAGTG	2 cut(s)	474, 767
Cac8I	GCNNGC	2 cut(s)	487, 730
CaiI	CAGNNNCTG	2 cut(s)	167, 294
CciI	TCATGA	3 cut(s)	298, 376, 603
Cfr13I	GGNCC	3 cut(s)	8, 642, 832
Cfr42I	CCGCGG	1 cut(s)	174
CseI	GACGC	1 cut(s)	153
Csp6I	GTAC	1 cut(s)	400
CviAII	CATG	7 cut(s)	299, 377, 464, 539, 604, 729, 891
CviQI	GTAC	1 cut(s)	400
DdeI	CTNAG	1 cut(s)	122
DpnI	GATC	3 cut(s)	180, 557, 594
DpnII	GATC	3 cut(s)	178, 555, 592
DriI	GACNNNNNGTC	1 cut(s)	690
Eam1104I	CTCTTC	2 cut(s)	806, 871
Eam1105I	GACNNNNNGTC	1 cut(s)	690
EarI	CTCTTC	2 cut(s)	806, 871
EciI	GGCGGA	1 cut(s)	824
Eco31I	GGTCTC	1 cut(s)	48
Eco47I	GGWCC	2 cut(s)	642, 832
Eco57I	CTGAAG	3 cut(s)	207, 432, 891
EcoRI	GAATTC	1 cut(s)	63
EcoRII	CCWGG	5 cut(s)	10, 58, 197, 757, 837
FaeI	CATG	7 cut(s)	302, 380, 467, 542, 607, 732, 894
FalI	AAGNNNNNCTT	4 cut(s)	141, 173, 389, 421
FatI	CATG	7 cut(s)	298, 376, 463, 538, 603, 728, 890
FauI	CCCGC	2 cut(s)	166, 482
FbaI	TGATCA	1 cut(s)	555
Fnu4HI	GCNGC	3 cut(s)	141, 171, 843
FokI	GGATG	2 cut(s)	458, 647
Fsp4HI	GCNGC	3 cut(s)	141, 171, 843
GluI	GCNGC	3 cut(s)	141, 171, 843
GsaI	CCCAGC	1 cut(s)	9
GsuI	CTGGAG	1 cut(s)	498
HaeIII	GGCC	4 cut(s)	10, 87, 202, 614
HapII	CCGG	1 cut(s)	333
HgaI	GACGC	1 cut(s)	153
Hin1II	CATG	7 cut(s)	302, 380, 467, 542, 607, 732, 894
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HinfI	GANTC	4 cut(s)	211, 380, 392, 563
HpaII	CCGG	1 cut(s)	333
HphI	GGTGA	1 cut(s)	188
Hpy166II	GTNNAC	2 cut(s)	24, 253
Hpy188I	TCNGA	7 cut(s)	123, 391, 509, 658, 684, 712, 871
Hpy188III	TCNNGA	3 cut(s)	299, 377, 604
Hpy8I	GTNNAC	2 cut(s)	24, 253
HpyAV	CCTTC	1 cut(s)	77
HpyCH4III	ACNGT	3 cut(s)	228, 296, 688
HpyCH4V	TGCA	8 cut(s)	102, 143, 288, 358, 485, 599, 674, 732
HpyF10VI	GCNNNNNNNGC	5 cut(s)	55, 84, 140, 170, 881
HpyF3I	CTNAG	1 cut(s)	122
Hsp92II	CATG	7 cut(s)	302, 380, 467, 542, 607, 732, 894
Ksp22I	TGATCA	1 cut(s)	555
KspI	CCGCGG	1 cut(s)	174
Kzo9I	GATC	3 cut(s)	178, 555, 592
LmnI	GCTCC	1 cut(s)	335
Lsp1109I	GCAGC	2 cut(s)	127, 829
LweI	GCATC	2 cut(s)	121, 472
MaeIII	GTNAC	2 cut(s)	272, 328
MalI	GATC	3 cut(s)	180, 557, 594
MboI	GATC	3 cut(s)	178, 555, 592
MboII	GAAGA	3 cut(s)	535, 823, 858
MflI	RGATCY	1 cut(s)	592
MluCI	AATT	5 cut(s)	63, 96, 152, 339, 879
MlyI	GAGTC	1 cut(s)	374
MnlI	CCTC	4 cut(s)	24, 106, 807, 860
MroXI	GAANNNNTTC	1 cut(s)	156
MseI	TTAA	1 cut(s)	407
MspA1I	CMGCKG	1 cut(s)	173
MspI	CCGG	1 cut(s)	333
MspR9I	CCNGG	5 cut(s)	12, 60, 199, 759, 839
MvaI	CCWGG	5 cut(s)	12, 60, 199, 759, 839
MvnI	CGCG	1 cut(s)	173
MwoI	GCNNNNNNNGC	5 cut(s)	55, 84, 140, 170, 881
NdeII	GATC	3 cut(s)	178, 555, 592
NlaIII	CATG	7 cut(s)	302, 380, 467, 542, 607, 732, 894
NlaIV	GGNNCC	2 cut(s)	57, 833
NmeAIII	GCCGAG	1 cut(s)	772
NmuCI	GTSAC	1 cut(s)	328
NspI	RCATGY	2 cut(s)	467, 732
PaeI	GCATGC	1 cut(s)	732
PagI	TCATGA	3 cut(s)	298, 376, 603
PciI	ACATGT	1 cut(s)	463
PdmI	GAANNNNTTC	1 cut(s)	156
PfeI	GAWTC	3 cut(s)	211, 392, 563
PkrI	GCNGC	3 cut(s)	142, 172, 844
PleI	GAGTC	1 cut(s)	374
PpsI	GAGTC	1 cut(s)	374
PscI	ACATGT	1 cut(s)	463
Psp6I	CCWGG	5 cut(s)	10, 58, 197, 757, 837
PspFI	CCCAGC	1 cut(s)	5
PspGI	CCWGG	5 cut(s)	10, 58, 197, 757, 837
PspN4I	GGNNCC	2 cut(s)	57, 833
PspPI	GGNCC	3 cut(s)	8, 642, 832
PstI	CTGCAG	1 cut(s)	145
PstNI	CAGNNNCTG	2 cut(s)	167, 294
PsuI	RGATCY	1 cut(s)	592
RsaI	GTAC	1 cut(s)	401
RsaNI	GTAC	1 cut(s)	400
SacII	CCGCGG	1 cut(s)	174
SaqAI	TTAA	1 cut(s)	407
SatI	GCNGC	3 cut(s)	141, 171, 843
Sau3AI	GATC	3 cut(s)	178, 555, 592
Sau96I	GGNCC	3 cut(s)	8, 642, 832
SchI	GAGTC	1 cut(s)	374
ScrFI	CCNGG	5 cut(s)	12, 60, 199, 759, 839
SetI	ASST	3 cut(s)	373, 802, 823
SfaNI	GCATC	2 cut(s)	121, 472
SfcI	CTRYAG	2 cut(s)	141, 583
Sfr303I	CCGCGG	1 cut(s)	174
SgrBI	CCGCGG	1 cut(s)	174
SinI	GGWCC	2 cut(s)	642, 832
SphI	GCATGC	1 cut(s)	732
Sse9I	AATT	5 cut(s)	63, 96, 152, 339, 879
SsiI	CCGC	4 cut(s)	171, 173, 489, 835
SspI	AATATT	2 cut(s)	284, 628
StyD4I	CCNGG	5 cut(s)	10, 58, 197, 757, 837
TaaI	ACNGT	3 cut(s)	228, 296, 688
TaqI	TCGA	1 cut(s)	214
TasI	AATT	5 cut(s)	63, 96, 152, 339, 879
TatI	WGTACW	1 cut(s)	399
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	3 cut(s)	211, 392, 563
Tru1I	TTAA	1 cut(s)	407
Tru9I	TTAA	1 cut(s)	407
TscAI	CASTG	2 cut(s)	481, 774
TseFI	GTSAC	1 cut(s)	328
TseI	GCWGC	2 cut(s)	140, 842
Tsp45I	GTSAC	1 cut(s)	328
TspDTI	ATGAA	1 cut(s)	714
TspGWI	ACGGA	1 cut(s)	647
TspRI	CASTG	2 cut(s)	481, 774
VpaK11BI	GGWCC	2 cut(s)	642, 832
XapI	RAATTY	1 cut(s)	63
XceI	RCATGY	2 cut(s)	467, 732
XmnI	GAANNNNTTC	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.