Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0007730

Physical Location & Seq

Genomic Coordinates Reverse (-)

30170887 .. 30173780

Gene Structure 2894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g29810.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGGTGGGACTGGGTTTTGGTGGACTTGGAGGGTGCTTGGGTCTCTGCTATTGGTGCCAGGAATTCTGGGTTGGGGCAAAGAAGGCCACTACACAATTTGCAAGATTGCAGAGGGATTTCTGAGTGAAGAGGCTCTCGCTGCGGTGAAAGAGTTGCTACCAGCGTCTGCCAAAGGTGATCTTGCAGAAGTTTGCTCCTGGCCTGACGAGATTCGTTATAGCTACCATTGGCGATGGAGTAGTCCCTTGCACTATGTTGACACACCGGATTTTAAGTGTAACTACAAATACTGCAGAGACTGCCATGACTCTGCTGGACATAAAGATAGATGTGTCACTGCAGCGATTTACAACTATTCGATGCAACTCTCTTCGGGTTACCATGAGTCCATCTCAGCATCAGGATACAACTTAACAGAGGCACTTATGTTCTTGTCTCATTTTATTGGGGATGTCCATCAGCCCCTACATGTTGGCTTCACTGGAGATGAAGGCGGGAACACAATAATAGTCCGATGGTATCGCAGGAAGACGAATCTCCACCATGTCTGGGATAATATGATCATTGAATCTGCTGTAAAGACTTACTACAGTAAGGATCTTGCAATCATGATAAAGGCCATTGAAAGGAATATTACAGATGGTTGGTTCAATGTTATACCGTCATGGAAGATTTGTGCAAATAATCAGACTGTATGTCCGAACGAGCATGCCTCTGAAAGCATTAATTTGGCATGCAAATATGCTTACAGAAATGCCACGCCTGGAAGCACACTGACTGATGATTACTTCCTCTCTCGGCTACCTGTTGTGGAGAAGAGGCTAGCTCAAAGTGGGGTCCGCCTGGCTGCTACCCTCAATCGTATTTTCTCTTCCCAAGCAAAACAAATTGCTGATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000014 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005575 GO:0005576 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043765 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

S1-P1_nuclease

Protein Analysis

301

Amino Acids

33.86

Weight (kDa)

6.85

Isoelectric Point (pI)

38.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007730)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21585 AT4G21585 AT4G21585 AT4G21585 AT4G21585 AT4G21585 AT4G21590 AT4G21590 AT4G21600
fragaria_vesca	FvH4_3g04350 FvH4_3g04350
malus_domestica	MD05G1323700.v1.1
prunus_persica	Prupe.4G038800_v2.0.a1
pyrus_communis	pycom05g29810
rosa_chinensis	RchiOBHm_Chr5g0006741
rosa_laevigata	RLG00000031424
rosa_multiflora	Rmu_sc0017347.1_g000006 Rmu_sc0018387.1_g000005
rosa_rugosa	Rorug04G0424100
rosa_samantha	Rh5AG052000 Rh5BG050900 Rh5CG059500 Rh5DG050000
rosa_wichuraiana	Rw5G005250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	55
AciI	CCGC	3 cut(s)	143, 495, 841
AclWI	GGATC	1 cut(s)	606
AcsI	RAATTY	1 cut(s)	63
AfiI	CCNNNNNNNGG	2 cut(s)	550, 627
AflIII	ACRYGT	1 cut(s)	469
AgsI	TTSAA	3 cut(s)	569, 626, 652
AhdI	GACNNNNNGTC	1 cut(s)	696
AjnI	CCWGG	4 cut(s)	58, 197, 763, 843
AjuI	GAANNNNNNNTTGG	2 cut(s)	55, 87
AluBI	AGCT	2 cut(s)	222, 827
AluI	AGCT	2 cut(s)	222, 827
Alw26I	GTCTC	3 cut(s)	48, 291, 441
AlwI	GGATC	1 cut(s)	606
AlwNI	CAGNNNCTG	2 cut(s)	167, 300
AoxI	GGCC	3 cut(s)	85, 200, 618
ApeKI	GCWGC	3 cut(s)	140, 341, 848
ApoI	RAATTY	1 cut(s)	63
AseI	ATTAAT	1 cut(s)	726
AspS9I	GGNCC	1 cut(s)	838
AsuHPI	GGTGA	2 cut(s)	157, 188
AsuNHI	GCTAGC	1 cut(s)	823
AvaII	GGWCC	1 cut(s)	838
BanI	GGYRCC	1 cut(s)	55
BarI	GAAGNNNNNNTAC	2 cut(s)	856, 888
BbsI	GAAGAC	1 cut(s)	536
BbvI	GCAGC	3 cut(s)	127, 353, 835
BccI	CCATC	5 cut(s)	228, 398, 465, 510, 635
BciT130I	CCWGG	4 cut(s)	60, 199, 765, 845
BciVI	GTATCC	1 cut(s)	398
BclI	TGATCA	1 cut(s)	561
BcoDI	GTCTC	3 cut(s)	48, 291, 441
BfaI	CTAG	1 cut(s)	824
BfmI	CTRYAG	3 cut(s)	292, 339, 589
BfuI	GTATCC	1 cut(s)	398
BisI	GCNGC	3 cut(s)	141, 342, 849
BlsI	GCNGC	3 cut(s)	142, 343, 850
Bme1390I	CCNGG	4 cut(s)	60, 199, 765, 845
Bme18I	GGWCC	1 cut(s)	838
BmeRI	GACNNNNNGTC	1 cut(s)	696
BmgT120I	GGNCC	1 cut(s)	838
BmiI	GGNNCC	2 cut(s)	57, 839
BmrFI	CCNGG	4 cut(s)	60, 199, 765, 845
BmrI	ACTGGG	1 cut(s)	21
BmsI	GCATC	3 cut(s)	351, 407, 886
BmtI	GCTAGC	1 cut(s)	827
BmuI	ACTGGG	1 cut(s)	21
BpiI	GAAGAC	1 cut(s)	536
BplI	GAGNNNNNCTC	6 cut(s)	377, 409, 698, 730, 811, 843
BpmI	CTGGAG	1 cut(s)	504
BsaBI	GATNNNNATC	1 cut(s)	456
BsaI	GGTCTC	1 cut(s)	48
BsaWI	WCCGGW	1 cut(s)	265
Bsc4I	CCNNNNNNNGG	2 cut(s)	550, 627
Bse1I	ACTGG	2 cut(s)	16, 487
Bse8I	GATNNNNATC	1 cut(s)	456
BseBI	CCWGG	4 cut(s)	60, 199, 765, 845
BseGI	GGATG	1 cut(s)	457
BseJI	GATNNNNATC	1 cut(s)	456
BseLI	CCNNNNNNNGG	2 cut(s)	550, 627
BseMII	CTCAG	2 cut(s)	113, 408
BseNI	ACTGG	2 cut(s)	16, 487
BseXI	GCAGC	3 cut(s)	127, 353, 835
BshFI	GGCC	3 cut(s)	87, 202, 620
BshNI	GGYRCC	1 cut(s)	55
BsiSI	CCGG	1 cut(s)	266
BslFI	GGGAC	2 cut(s)	22, 228
BslI	CCNNNNNNNGG	2 cut(s)	550, 627
BsmAI	GTCTC	3 cut(s)	48, 291, 441
BsmFI	GGGAC	2 cut(s)	22, 228
BsnI	GGCC	3 cut(s)	87, 202, 620
Bso31I	GGTCTC	1 cut(s)	48
Bsp143I	GATC	3 cut(s)	178, 561, 598
BspACI	CCGC	3 cut(s)	143, 495, 841
BspANI	GGCC	3 cut(s)	87, 202, 620
BspCNI	CTCAG	2 cut(s)	114, 407
BspHI	TCATGA	1 cut(s)	609
BspLI	GGNNCC	2 cut(s)	57, 839
BspMAI	CTGCAG	2 cut(s)	296, 343
BspOI	GCTAGC	1 cut(s)	827
BspPI	GGATC	1 cut(s)	606
BspT107I	GGYRCC	1 cut(s)	55
BspTNI	GGTCTC	1 cut(s)	48
BsrI	ACTGG	2 cut(s)	16, 487
BssMI	GATC	3 cut(s)	178, 561, 598
Bst2UI	CCWGG	4 cut(s)	60, 199, 765, 845
Bst4CI	ACNGT	3 cut(s)	593, 663, 694
Bst6I	CTCTTC	4 cut(s)	123, 376, 812, 877
BstAPI	GCANNNNNTGC	1 cut(s)	300
BstC8I	GCNNGC	3 cut(s)	711, 736, 825
BstDEI	CTNAG	2 cut(s)	122, 394
BstEII	GGTNACC	1 cut(s)	377
BstF5I	GGATG	1 cut(s)	457
BstKTI	GATC	3 cut(s)	181, 564, 601
BstMAI	GTCTC	3 cut(s)	48, 291, 441
BstMBI	GATC	3 cut(s)	178, 561, 598
BstMWI	GCNNNNNNNGC	4 cut(s)	55, 84, 140, 300
BstNI	CCWGG	4 cut(s)	60, 199, 765, 845
BstNSI	RCATGY	3 cut(s)	473, 713, 738
BstPI	GGTNACC	1 cut(s)	377
BstSCI	CCNGG	4 cut(s)	58, 197, 763, 843
BstSFI	CTRYAG	3 cut(s)	292, 339, 589
BstV1I	GCAGC	3 cut(s)	127, 353, 835
BstV2I	GAAGAC	1 cut(s)	536
BstX2I	RGATCY	1 cut(s)	598
BstYI	RGATCY	1 cut(s)	598
BsuI	GTATCC	1 cut(s)	398
BsuRI	GGCC	3 cut(s)	87, 202, 620
BtgZI	GCGATG	1 cut(s)	247
BtsCI	GGATG	1 cut(s)	457
BtsI	GCAGTG	1 cut(s)	336
BtsIMutI	CAGTG	3 cut(s)	336, 480, 773
Cac8I	GCNNGC	3 cut(s)	711, 736, 825
CaiI	CAGNNNCTG	2 cut(s)	167, 300
CciI	TCATGA	1 cut(s)	609
Cfr13I	GGNCC	1 cut(s)	838
CseI	GACGC	1 cut(s)	153
CviAII	CATG	9 cut(s)	305, 383, 470, 545, 610, 666, 710, 735, 900
DdeI	CTNAG	2 cut(s)	122, 394
DpnI	GATC	3 cut(s)	180, 563, 600
DpnII	GATC	3 cut(s)	178, 561, 598
DriI	GACNNNNNGTC	1 cut(s)	696
Eam1104I	CTCTTC	4 cut(s)	123, 376, 812, 877
Eam1105I	GACNNNNNGTC	1 cut(s)	696
EarI	CTCTTC	4 cut(s)	123, 376, 812, 877
EciI	GGCGGA	1 cut(s)	830
Eco31I	GGTCTC	1 cut(s)	48
Eco47I	GGWCC	1 cut(s)	838
Eco91I	GGTNACC	1 cut(s)	377
EcoO65I	GGTNACC	1 cut(s)	377
EcoRI	GAATTC	1 cut(s)	63
EcoRII	CCWGG	4 cut(s)	58, 197, 763, 843
EcoT22I	ATGCAT	1 cut(s)	901
FaeI	CATG	9 cut(s)	308, 386, 473, 548, 613, 669, 713, 738, 903
FalI	AAGNNNNNCTT	2 cut(s)	165, 197
FaqI	GGGAC	2 cut(s)	22, 228
FatI	CATG	9 cut(s)	304, 382, 469, 544, 609, 665, 709, 734, 899
FauI	CCCGC	1 cut(s)	488
FbaI	TGATCA	1 cut(s)	561
Fnu4HI	GCNGC	3 cut(s)	141, 342, 849
FokI	GGATG	1 cut(s)	464
Fsp4HI	GCNGC	3 cut(s)	141, 342, 849
FspBI	CTAG	1 cut(s)	824
GluI	GCNGC	3 cut(s)	141, 342, 849
GsuI	CTGGAG	1 cut(s)	504
HaeIII	GGCC	3 cut(s)	87, 202, 620
HapII	CCGG	1 cut(s)	266
HgaI	GACGC	1 cut(s)	153
Hin1II	CATG	9 cut(s)	308, 386, 473, 548, 613, 669, 713, 738, 903
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HinfI	GANTC	5 cut(s)	211, 308, 386, 535, 569
HpaII	CCGG	1 cut(s)	266
HphI	GGTGA	2 cut(s)	157, 188
Hpy166II	GTNNAC	2 cut(s)	24, 259
Hpy188I	TCNGA	5 cut(s)	123, 515, 690, 702, 718
Hpy188III	TCNNGA	2 cut(s)	402, 610
Hpy8I	GTNNAC	2 cut(s)	24, 259
HpyAV	CCTTC	2 cut(s)	77, 485
HpyCH4III	ACNGT	3 cut(s)	593, 663, 694
HpyF10VI	GCNNNNNNNGC	4 cut(s)	55, 84, 140, 300
HpyF3I	CTNAG	2 cut(s)	122, 394
Hsp92II	CATG	9 cut(s)	308, 386, 473, 548, 613, 669, 713, 738, 903
Ksp22I	TGATCA	1 cut(s)	561
Kzo9I	GATC	3 cut(s)	178, 561, 598
LmnI	GCTCC	1 cut(s)	200
Lsp1109I	GCAGC	3 cut(s)	127, 353, 835
LweI	GCATC	3 cut(s)	351, 407, 886
MaeI	CTAG	1 cut(s)	824
MaeIII	GTNAC	3 cut(s)	278, 334, 377
MalI	GATC	3 cut(s)	180, 563, 600
MboI	GATC	3 cut(s)	178, 561, 598
MboII	GAAGA	6 cut(s)	140, 363, 541, 682, 829, 864
MflI	RGATCY	1 cut(s)	598
MluCI	AATT	4 cut(s)	63, 96, 727, 888
MlyI	GAGTC	2 cut(s)	302, 395
MnlI	CCTC	8 cut(s)	24, 106, 124, 412, 724, 803, 813, 866
Mph1103I	ATGCAT	1 cut(s)	901
MseI	TTAA	3 cut(s)	273, 413, 726
MspI	CCGG	1 cut(s)	266
MspR9I	CCNGG	4 cut(s)	60, 199, 765, 845
MvaI	CCWGG	4 cut(s)	60, 199, 765, 845
MwoI	GCNNNNNNNGC	4 cut(s)	55, 84, 140, 300
NdeII	GATC	3 cut(s)	178, 561, 598
NheI	GCTAGC	1 cut(s)	823
NlaIII	CATG	9 cut(s)	308, 386, 473, 548, 613, 669, 713, 738, 903
NlaIV	GGNNCC	2 cut(s)	57, 839
NmeAIII	GCCGAG	1 cut(s)	778
NmuCI	GTSAC	1 cut(s)	334
NsiI	ATGCAT	1 cut(s)	901
NspI	RCATGY	3 cut(s)	473, 713, 738
PaeI	GCATGC	2 cut(s)	713, 738
PagI	TCATGA	1 cut(s)	609
PciI	ACATGT	1 cut(s)	469
PfeI	GAWTC	3 cut(s)	211, 535, 569
PkrI	GCNGC	3 cut(s)	142, 343, 850
PleI	GAGTC	2 cut(s)	302, 394
PpsI	GAGTC	2 cut(s)	302, 394
PscI	ACATGT	1 cut(s)	469
PshBI	ATTAAT	1 cut(s)	726
Psp6I	CCWGG	4 cut(s)	58, 197, 763, 843
PspEI	GGTNACC	1 cut(s)	377
PspGI	CCWGG	4 cut(s)	58, 197, 763, 843
PspN4I	GGNNCC	2 cut(s)	57, 839
PspPI	GGNCC	1 cut(s)	838
PstI	CTGCAG	2 cut(s)	296, 343
PstNI	CAGNNNCTG	2 cut(s)	167, 300
PsuI	RGATCY	1 cut(s)	598
SaqAI	TTAA	3 cut(s)	273, 413, 726
SatI	GCNGC	3 cut(s)	141, 342, 849
Sau3AI	GATC	3 cut(s)	178, 561, 598
Sau96I	GGNCC	1 cut(s)	838
SchI	GAGTC	2 cut(s)	302, 395
ScrFI	CCNGG	4 cut(s)	60, 199, 765, 845
SetI	ASST	4 cut(s)	178, 224, 808, 829
SfaNI	GCATC	3 cut(s)	351, 407, 886
SfcI	CTRYAG	3 cut(s)	292, 339, 589
SinI	GGWCC	1 cut(s)	838
SphI	GCATGC	2 cut(s)	713, 738
Sse9I	AATT	4 cut(s)	63, 96, 727, 888
SsiI	CCGC	3 cut(s)	143, 495, 841
SspI	AATATT	1 cut(s)	634
SspMI	CTAG	1 cut(s)	824
StyD4I	CCNGG	4 cut(s)	58, 197, 763, 843
TaaI	ACNGT	3 cut(s)	593, 663, 694
TaqI	TCGA	1 cut(s)	359
TasI	AATT	4 cut(s)	63, 96, 727, 888
TfiI	GAWTC	3 cut(s)	211, 535, 569
Tru1I	TTAA	3 cut(s)	273, 413, 726
Tru9I	TTAA	3 cut(s)	273, 413, 726
TscAI	CASTG	3 cut(s)	343, 487, 780
TseFI	GTSAC	1 cut(s)	334
TseI	GCWGC	3 cut(s)	140, 341, 848
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	1 cut(s)	504
TspRI	CASTG	3 cut(s)	343, 487, 780
VpaK11BI	GGWCC	1 cut(s)	838
VspI	ATTAAT	1 cut(s)	726
XapI	RAATTY	1 cut(s)	63
XceI	RCATGY	3 cut(s)	473, 713, 738
XcmI	CCANNNNNNNNNTGG	1 cut(s)	311
XspI	CTAG	1 cut(s)	824
Zsp2I	ATGCAT	1 cut(s)	901

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.