Rmu_sc0017347.1_g000006

Endonuclease 4-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017347.1
Physical Location & Seq
Forward (+)
31505 .. 32196
692 bp
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UTR
Exon/CDS
Intron
Rmu_sc0017347.1_g000006.1.cds

Sequence Viewer

Length: 297 bp
atgggtttgtttgggctgtggtggaatggaagtgcggtagggtttcttctattggtgccaggaattctgggttggggcaaagaaggccattatgcagtttgcaagatagcagagggatttctgagtgaagatgctttagctgcagtgaaagaattgctaccggtatctgctggaggtgatcttgctgcagtttgctcgtggcctgatgagattcgctttcattatcattggagtagtgctttacactatgttgacacacccgattttctgtgtaactacaattacagcagtgagtag

Protein Analysis

98

Amino Acids

10.75

Weight (kDa)

4.77

Isoelectric Point (pI)

40.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 55
AciI CCGC 1 cut(s) 35
AcsI RAATTY 1 cut(s) 63
AgeI ACCGGT 1 cut(s) 160
AjnI CCWGG 1 cut(s) 58
AjuI GAANNNNNNNTTGG 2 cut(s) 55, 87
AluBI AGCT 1 cut(s) 140
AluI AGCT 1 cut(s) 140
AoxI GGCC 2 cut(s) 85, 200
ApeKI GCWGC 2 cut(s) 140, 185
ApoI RAATTY 1 cut(s) 63
AsiGI ACCGGT 1 cut(s) 160
AsuHPI GGTGA 1 cut(s) 188
BanI GGYRCC 1 cut(s) 55
BarI GAAGNNNNNNTAC 2 cut(s) 30, 62
BauI CACGAG 1 cut(s) 196
BbvI GCAGC 2 cut(s) 127, 172
BcgI CGANNNNNNTGC 2 cut(s) 177, 211
BciT130I CCWGG 1 cut(s) 60
BfmI CTRYAG 2 cut(s) 141, 186
BisI GCNGC 2 cut(s) 141, 186
BlsI GCNGC 2 cut(s) 142, 187
Bme1390I CCNGG 1 cut(s) 60
BmiI GGNNCC 1 cut(s) 57
BmrFI CCNGG 1 cut(s) 60
BmsI GCATC 1 cut(s) 121
BpmI CTGGAG 1 cut(s) 192
BsaWI WCCGGW 1 cut(s) 160
Bse118I RCCGGY 1 cut(s) 160
BseBI CCWGG 1 cut(s) 60
BseMII CTCAG 1 cut(s) 113
BseXI GCAGC 2 cut(s) 127, 172
BshFI GGCC 2 cut(s) 87, 202
BshNI GGYRCC 1 cut(s) 55
BshTI ACCGGT 1 cut(s) 160
BsiSI CCGG 1 cut(s) 161
BsnI GGCC 2 cut(s) 87, 202
Bsp143I GATC 1 cut(s) 178
BspACI CCGC 1 cut(s) 35
BspANI GGCC 2 cut(s) 87, 202
BspCNI CTCAG 1 cut(s) 114
BspLI GGNNCC 1 cut(s) 57
BspMAI CTGCAG 2 cut(s) 145, 190
BspT107I GGYRCC 1 cut(s) 55
BsrFI RCCGGY 1 cut(s) 160
BssAI RCCGGY 1 cut(s) 160
BssMI GATC 1 cut(s) 178
BssSI CACGAG 1 cut(s) 196
Bst2BI CACGAG 1 cut(s) 196
Bst2UI CCWGG 1 cut(s) 60
BstDEI CTNAG 1 cut(s) 122
BstKTI GATC 1 cut(s) 181
BstMBI GATC 1 cut(s) 178
BstMWI GCNNNNNNNGC 2 cut(s) 84, 140
BstNI CCWGG 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 58
BstSFI CTRYAG 2 cut(s) 141, 186
BstV1I GCAGC 2 cut(s) 127, 172
BsuRI GGCC 2 cut(s) 87, 202
BtsI GCAGTG 2 cut(s) 150, 295
BtsIMutI CAGTG 2 cut(s) 150, 295
Cfr10I RCCGGY 1 cut(s) 160
CspAI ACCGGT 1 cut(s) 160
CviJI RGCY 4 cut(s) 16, 87, 140, 202
CviKI_1 RGCY 4 cut(s) 16, 87, 140, 202
DdeI CTNAG 1 cut(s) 122
DpnI GATC 1 cut(s) 180
DpnII GATC 1 cut(s) 178
EcoRI GAATTC 1 cut(s) 63
EcoRII CCWGG 1 cut(s) 58
FaiI YATR 2 cut(s) 93, 249
Fnu4HI GCNGC 2 cut(s) 141, 186
Fsp4HI GCNGC 2 cut(s) 141, 186
GluI GCNGC 2 cut(s) 141, 186
GsuI CTGGAG 1 cut(s) 192
HaeIII GGCC 2 cut(s) 87, 202
HapII CCGG 1 cut(s) 161
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HinfI GANTC 1 cut(s) 211
HpaII CCGG 1 cut(s) 161
HphI GGTGA 1 cut(s) 188
Hpy166II GTNNAC 1 cut(s) 253
Hpy188I TCNGA 1 cut(s) 123
Hpy8I GTNNAC 1 cut(s) 253
HpyAV CCTTC 1 cut(s) 77
HpyCH4V TGCA 4 cut(s) 95, 102, 143, 188
HpyF10VI GCNNNNNNNGC 2 cut(s) 84, 140
HpyF3I CTNAG 1 cut(s) 122
Kzo9I GATC 1 cut(s) 178
LpnPI CCDG 6 cut(s) 45, 53, 72, 156, 174, 216
Lsp1109I GCAGC 2 cut(s) 127, 172
LweI GCATC 1 cut(s) 121
MaeIII GTNAC 1 cut(s) 272
MalI GATC 1 cut(s) 180
MboI GATC 1 cut(s) 178
MboII GAAGA 2 cut(s) 38, 140
MluCI AATT 3 cut(s) 63, 152, 280
MnlI CCTC 2 cut(s) 106, 167
MspI CCGG 1 cut(s) 161
MspR9I CCNGG 1 cut(s) 60
MvaI CCWGG 1 cut(s) 60
MwoI GCNNNNNNNGC 2 cut(s) 84, 140
NdeII GATC 1 cut(s) 178
NlaIV GGNNCC 1 cut(s) 57
PfeI GAWTC 1 cut(s) 211
PinAI ACCGGT 1 cut(s) 160
PkrI GCNGC 2 cut(s) 142, 187
Psp6I CCWGG 1 cut(s) 58
PspGI CCWGG 1 cut(s) 58
PspN4I GGNNCC 1 cut(s) 57
PstI CTGCAG 2 cut(s) 145, 190
SatI GCNGC 2 cut(s) 141, 186
Sau3AI GATC 1 cut(s) 178
ScrFI CCNGG 1 cut(s) 60
SetI ASST 2 cut(s) 142, 178
SfaNI GCATC 1 cut(s) 121
SfcI CTRYAG 2 cut(s) 141, 186
Sse9I AATT 3 cut(s) 63, 152, 280
SsiI CCGC 1 cut(s) 35
StyD4I CCNGG 1 cut(s) 58
TasI AATT 3 cut(s) 63, 152, 280
TfiI GAWTC 1 cut(s) 211
TscAI CASTG 2 cut(s) 150, 295
TseI GCWGC 2 cut(s) 140, 185
TspDTI ATGAA 1 cut(s) 209
TspRI CASTG 2 cut(s) 150, 295
XapI RAATTY 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.